Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

59638004 .. 59639774

Gene Structure 1771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCTAAGAATGGAGCTCTCTTGCCAACTCTCCCAAGCCGTCTCCTCCCTCGACCTCTTATTCCGAAAAGGGATTCGCATGCCCACCAAGACTCTCGCTTTTCTACTGCAGCACTGTGGAGACGCTCTGTCCCTCAGAGAAGGCAAATGGGTTCACTTGTATTTGAGGCTCACCGGATTCAAACGCCCACCTTTGCTTTTGGGCCTTTGGCTAACCATTTGATTGGGATGTACGTCAAATGCGGCAATGCGGGCGATGCACGCAAGAATGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGAGTTGCGGAGGTCGTCGGTTGGGTTTAATGAGTTTAATTTTGCAGGTGTTTTGACTGTGTGTGTGAAGATGAGGGAATGGGAGCTTCTTAGGCAGGCTCATGGGCAGGTCTTTGTTGCTGGGTTTTTGTCGAATGTGATGCTTTCGAGTTCGGTGGTGGATGCTTTTGCCAAGTGTGGAGAGATGGTAGATGCCAGGAGATTGTTCGATGAGATGGCTGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGTGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTGTGATTTCAGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTCGCATTGTTTGCAGAGATGATGCTGTTTCAAATCAGGCCTGATCAGTTTACCTTTAGTAGGTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTCAAGCATGGTAAACAAATTCATGCCTCTTTAGTACGAAGTAATTTAAGACCCAACACGATTGTCATGAGTTCTCTTATTGACATGTATTCCAAATGCGGCAATTTGGGGGCTGGAAGGCAGGTTTTCAAGCTCATGGGTGATAAGCAAGACACCGTGTTATGGAACACAATGATGTTTGCCTTAGCACAGCATGGTTATGGTATAGAGGCAATGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCAGTTACGACCACCTTTGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGCTTTTCAAGTCCATGACTGATGATTGTGGCATTGTTCCTGATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGTTGATGAACCAGCTCGAAAATATGCCATACCGGCTGCATCCTCTGAAAGAGGAAATATACTCTGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAATGCCGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

442

Amino Acids

49.37

Weight (kDa)

7.57

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	180 - 208	6.3e-07	PPR repeat
PPR_2	PF13041	208 - 255	1.9e-09	PPR repeat family
PPR	PF01535	210 - 236	1.3e-07	PPR repeat
PPR_2	PF13041	310 - 357	9.1e-10	PPR repeat family
PPR	PF01535	312 - 342	6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	3 cut(s)	338, 400, 889
AccB1I	GGYRCC	1 cut(s)	747
AciI	CCGC	4 cut(s)	243, 251, 310, 876
AcsI	RAATTY	1 cut(s)	795
AcuI	CTGAAG	1 cut(s)	1287
AfaI	GTAC	2 cut(s)	233, 813
AfeI	AGCGCT	1 cut(s)	684
AfiI	CCNNNNNNNGG	2 cut(s)	744, 939
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	6 cut(s)	182, 716, 907, 1004, 1108, 1270
AhdI	GACNNNNNGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	497
AluBI	AGCT	8 cut(s)	17, 388, 590, 773, 910, 1184, 1213, 1280
AluI	AGCT	8 cut(s)	17, 388, 590, 773, 910, 1184, 1213, 1280
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	47, 115
Aor51HI	AGCGCT	1 cut(s)	684
AoxI	GGCC	2 cut(s)	203, 722
ApeKI	GCWGC	2 cut(s)	110, 1234
ApoI	RAATTY	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	203, 543
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	3 cut(s)	164, 587, 929
AvaII	GGWCC	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	1011
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	122, 1221
BccI	CCATC	3 cut(s)	481, 511, 1282
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	1 cut(s)	499
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	2 cut(s)	47, 115
BfaI	CTAG	5 cut(s)	591, 660, 765, 1082, 1324
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	686
BfuAI	ACCTGC	3 cut(s)	338, 400, 889
BglI	GCCNNNNNGGC	1 cut(s)	1231
BisI	GCNGC	4 cut(s)	111, 244, 877, 1235
BlsI	GCNGC	4 cut(s)	112, 245, 878, 1236
Bme1390I	CCNGG	2 cut(s)	499, 626
Bme18I	GGWCC	1 cut(s)	543
BmeRI	GACNNNNNGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	203, 543
BmiI	GGNNCC	1 cut(s)	749
BmrFI	CCNGG	2 cut(s)	499, 626
BmsI	GCATC	8 cut(s)	247, 432, 454, 484, 600, 696, 1246, 1288
BpiI	GAAGAC	1 cut(s)	1011
Bpu10I	CCTNAGC	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	626
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	744, 939
Bse118I	RCCGGY	1 cut(s)	1230
Bse1I	ACTGG	2 cut(s)	555, 1031
Bse3DI	GCAATG	2 cut(s)	253, 996
BseBI	CCWGG	1 cut(s)	499
BseGI	GGATG	6 cut(s)	234, 469, 535, 615, 1193, 1237
BseLI	CCNNNNNNNGG	2 cut(s)	744, 939
BseMI	GCAATG	2 cut(s)	253, 996
BseMII	CTCAG	2 cut(s)	149, 606
BseNI	ACTGG	2 cut(s)	555, 1031
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	122, 1221
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	1106
BshFI	GGCC	2 cut(s)	205, 724
BshNI	GGYRCC	1 cut(s)	747
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	175, 626, 1231
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	744, 939
BsmAI	GTCTC	2 cut(s)	47, 115
BsmBI	CGTCTC	2 cut(s)	47, 115
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	205, 724
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	604, 727, 1168
BspACI	CCGC	4 cut(s)	243, 251, 310, 876
BspANI	GGCC	2 cut(s)	205, 724
BspCNI	CTCAG	2 cut(s)	148, 607
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	1 cut(s)	749
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	3 cut(s)	338, 400, 889
BspT107I	GGYRCC	1 cut(s)	747
BsrDI	GCAATG	2 cut(s)	253, 996
BsrFI	RCCGGY	1 cut(s)	1230
BsrI	ACTGG	2 cut(s)	555, 1031
BssAI	RCCGGY	1 cut(s)	1230
BssMI	GATC	3 cut(s)	604, 727, 1168
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	4 cut(s)	117, 361, 934, 1275
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstC8I	GCNNGC	6 cut(s)	81, 253, 262, 399, 687, 1159
BstDEI	CTNAG	5 cut(s)	6, 135, 392, 615, 961
BstENI	CCTNNNNNAGG	1 cut(s)	742
BstF5I	GGATG	6 cut(s)	234, 469, 535, 615, 1193, 1237
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	3 cut(s)	607, 730, 1171
BstMAI	GTCTC	2 cut(s)	47, 115
BstMBI	GATC	3 cut(s)	604, 727, 1168
BstMWI	GCNNNNNNNGC	9 cut(s)	252, 257, 261, 394, 682, 695, 770, 1093, 1231
BstNI	CCWGG	1 cut(s)	499
BstNSI	RCATGY	3 cut(s)	83, 865, 1161
BstSCI	CCNGG	2 cut(s)	497, 624
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	122, 1221
BstV2I	GAAGAC	1 cut(s)	1011
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	205, 724
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	6 cut(s)	234, 469, 535, 615, 1193, 1237
BtsIMutI	CAGTG	2 cut(s)	113, 548
BveI	ACCTGC	3 cut(s)	338, 400, 889
Cac8I	GCNNGC	6 cut(s)	81, 253, 262, 399, 687, 1159
CciI	TCATGA	1 cut(s)	843
CfoI	GCGC	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	1230
Cfr13I	GGNCC	2 cut(s)	203, 543
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	232, 812
CspCI	CAANNNNNGTGG	2 cut(s)	1030, 1065
CviQI	GTAC	2 cut(s)	232, 812
DdeI	CTNAG	5 cut(s)	6, 135, 392, 615, 961
DpnI	GATC	3 cut(s)	606, 729, 1170
DpnII	GATC	3 cut(s)	604, 727, 1168
DriI	GACNNNNNGTC	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	543
Eco47III	AGCGCT	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	1287
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	1159
EcoT38I	GRGCYC	1 cut(s)	19
Esp3I	CGTCTC	2 cut(s)	47, 115
FaqI	GGGAC	1 cut(s)	116
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	4 cut(s)	111, 244, 877, 1235
FokI	GGATG	6 cut(s)	241, 476, 542, 622, 1200, 1224
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	4 cut(s)	111, 244, 877, 1235
FspBI	CTAG	5 cut(s)	591, 660, 765, 1082, 1324
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	4 cut(s)	111, 244, 877, 1235
GsaI	CCCAGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	205, 724
HapII	CCGG	3 cut(s)	175, 626, 1231
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	685
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	3 cut(s)	74, 92, 178
HpaII	CCGG	3 cut(s)	175, 626, 1231
HphI	GGTGA	3 cut(s)	164, 587, 929
Hpy166II	GTNNAC	3 cut(s)	155, 735, 791
Hpy188I	TCNGA	4 cut(s)	66, 138, 609, 1245
Hpy188III	TCNNGA	3 cut(s)	558, 844, 1139
Hpy8I	GTNNAC	3 cut(s)	155, 735, 791
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	135, 888, 1085
HpyCH4III	ACNGT	4 cut(s)	117, 361, 934, 1275
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	8 cut(s)	110, 260, 347, 698, 994, 1087, 1157, 1237
HpyF10VI	GCNNNNNNNGC	9 cut(s)	252, 257, 261, 394, 682, 695, 770, 1093, 1231
HpyF3I	CTNAG	5 cut(s)	6, 135, 392, 615, 961
HpySE526I	ACGT	1 cut(s)	234
HspAI	GCGC	1 cut(s)	683
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	3 cut(s)	604, 727, 1168
LmnI	GCTCC	2 cut(s)	14, 385
Lsp1109I	GCAGC	2 cut(s)	122, 1221
LweI	GCATC	8 cut(s)	247, 432, 454, 484, 600, 696, 1246, 1288
MaeI	CTAG	5 cut(s)	591, 660, 765, 1082, 1324
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	1033, 1306
MalI	GATC	3 cut(s)	606, 729, 1170
MboI	GATC	3 cut(s)	604, 727, 1168
MboII	GAAGA	5 cut(s)	382, 631, 1016, 1304, 1307
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	5 cut(s)	340, 795, 820, 880, 1164
MlyI	GAGTC	1 cut(s)	86
Mph1103I	ATGCAT	1 cut(s)	1159
MseI	TTAA	4 cut(s)	330, 339, 824, 1163
MslI	CAYNNNNRTG	2 cut(s)	950, 975
MspI	CCGG	3 cut(s)	175, 626, 1231
MspR9I	CCNGG	2 cut(s)	499, 626
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	9 cut(s)	252, 257, 261, 394, 682, 695, 770, 1093, 1231
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	3 cut(s)	604, 727, 1168
NlaIV	GGNNCC	1 cut(s)	749
NsiI	ATGCAT	1 cut(s)	1159
NspI	RCATGY	3 cut(s)	83, 865, 1161
PaeI	GCATGC	2 cut(s)	83, 1161
PagI	TCATGA	1 cut(s)	843
PaqCI	CACCTGC	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	724
PciI	ACATGT	1 cut(s)	861
PfeI	GAWTC	2 cut(s)	74, 178
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	4 cut(s)	112, 245, 878, 1236
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	861
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	749
PspPI	GGNCC	2 cut(s)	203, 543
PstI	CTGCAG	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	233, 813
RsaNI	GTAC	2 cut(s)	232, 812
RseI	CAYNNNNRTG	2 cut(s)	950, 975
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	4 cut(s)	330, 339, 824, 1163
SatI	GCNGC	4 cut(s)	111, 244, 877, 1235
Sau3AI	GATC	3 cut(s)	604, 727, 1168
Sau96I	GGNCC	2 cut(s)	203, 543
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	499, 626
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	8 cut(s)	247, 432, 454, 484, 600, 696, 1246, 1288
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	543
SmiMI	CAYNNNNRTG	2 cut(s)	950, 975
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
SphI	GCATGC	2 cut(s)	83, 1161
Sse9I	AATT	5 cut(s)	340, 795, 820, 880, 1164
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	4 cut(s)	243, 251, 310, 876
SspMI	CTAG	5 cut(s)	591, 660, 765, 1082, 1324
SstI	GAGCTC	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	2 cut(s)	497, 624
TaaI	ACNGT	4 cut(s)	117, 361, 934, 1275
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	6 cut(s)	52, 434, 449, 510, 1180, 1215
TasI	AATT	5 cut(s)	340, 795, 820, 880, 1164
TauI	GCSGC	2 cut(s)	246, 879
TfiI	GAWTC	2 cut(s)	74, 178
Tru1I	TTAA	4 cut(s)	330, 339, 824, 1163
Tru9I	TTAA	4 cut(s)	330, 339, 824, 1163
TscAI	CASTG	2 cut(s)	120, 555
TseI	GCWGC	2 cut(s)	110, 1234
TspDTI	ATGAA	4 cut(s)	596, 693, 788, 1220
TspRI	CASTG	2 cut(s)	120, 555
Tth111I	GACNNNGTC	1 cut(s)	1010
VpaK11BI	GGWCC	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	742
XapI	RAATTY	1 cut(s)	795
XceI	RCATGY	3 cut(s)	83, 865, 1161
XspI	CTAG	5 cut(s)	591, 660, 765, 1082, 1324
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.