Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

9258717 .. 9260699

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGATGAACTTCAAATGCGGCGATGAGGTTGATGCACGCAAGGTGTTTGATAAAATCTTTGTGATGAATTTGTACTTGTGGAACAATATGCCATCTGGGTATGCAATGATGAGGAGTCTGAAGGTGGCCCGGAACTTGTTTGAGCAAATGCCTGAGAGGGATGTTGTGTTCTGGAACACCGTGGTGATTGGTTATGCCCAGAATGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGAGTTGCGGAGATCGTCGGTTGGGTTTAATGAGTTTAGTTTTGCGGGTGTTTTGACTGTGTGTGTGAAGATGAGGGAATGGGAGCTTATTAGGCAAGCTCATGGGCAAGTTTGTTCGGTGGTGGATGCTTATGCCAAGTGTGGGGAGATGGCGGATGCTAGGAGATTGTTCGATGAGATGGCTGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGTGAGTTGTTTGATTGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGTTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAATCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCTTTTAAGCATGGTAAACAAATTCATGCCTCTTTAGTACGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGGGGGAATTTGGGGGCCAGAAGGCAGGTATTCAAGCTCATGGGTGATATGCAAGACACCGTGTTATGGAACACAATGATGTCTGACTTAGCACAACATGGTCATAGTATAGAGGCATTTTCAGGTGTAAAGCCGGTTAATACCACCTTTGTTGTCATTCTCAATACTTGTAGTCATTCTGGTCTAGTGCAGGAAGGATTTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTCATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGGCGAACACCTTATTGAGTTAGAGCCTCAATCTTTTGCTCCCTATATTTTGCTTTCGAGCATATATGCTGAAGAAGGTAAATGGGAGCTGGTAGAGAAGGTGAGACGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGAGCCATTAGTTGGGTAGAAGTTGAAAGTAGAGTGCATGCTTTCACTGTATCAGACCGACTGCATCCTCTGAAAGGGGAAATATACTCAGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTGGCGCCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

471

Amino Acids

53.65

Weight (kDa)

6.29

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	53 - 102	2.1e-06	PPR repeat family
PPR_2	PF13041	174 - 221	5.6e-11	PPR repeat family
PPR	PF01535	176 - 202	3.3e-08	PPR repeat
E_motif	PF20431	366 - 428	9.6e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	1403
AccB7I	CCANNNNNTGG	1 cut(s)	1275
AciI	CCGC	4 cut(s)	18, 244, 281, 389
AcsI	RAATTY	3 cut(s)	67, 693, 778
AcuI	CTGAAG	3 cut(s)	140, 1215, 1377
AcyI	GRCGYC	1 cut(s)	1404
AfaI	GTAC	2 cut(s)	74, 711
AfeI	AGCGCT	1 cut(s)	582
AfiI	CCNNNNNNNGG	7 cut(s)	204, 205, 378, 774, 837, 1275, 1337
AflIII	ACRYGT	2 cut(s)	759, 1249
AgsI	TTSAA	6 cut(s)	13, 614, 805, 982, 1289, 1360
AleI	CACNNNNGTG	1 cut(s)	182
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	9 cut(s)	322, 335, 488, 671, 808, 1058, 1111, 1213, 1370
AluI	AGCT	9 cut(s)	322, 335, 488, 671, 808, 1058, 1111, 1213, 1370
Alw26I	GTCTC	2 cut(s)	1222, 1240
AlwNI	CAGNNNCTG	1 cut(s)	1400
Aor51HI	AGCGCT	1 cut(s)	582
AoxI	GGCC	3 cut(s)	126, 620, 786
ApoI	RAATTY	3 cut(s)	67, 693, 778
AspLEI	GCGC	2 cut(s)	583, 1406
AspS9I	GGNCC	3 cut(s)	127, 441, 786
AsuC2I	CCSGG	2 cut(s)	130, 524
AsuHPI	GGTGA	4 cut(s)	196, 485, 827, 1237
AvaII	GGWCC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	1403
BccI	CCATC	4 cut(s)	100, 379, 409, 1372
BceAI	ACGGC	1 cut(s)	1247
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	2 cut(s)	130, 524
BcoDI	GTCTC	2 cut(s)	1222, 1240
BfaI	CTAG	4 cut(s)	396, 489, 663, 956
BfoI	RGCGCY	2 cut(s)	584, 1407
BfuAI	ACCTGC	1 cut(s)	787
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	130, 524
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	127, 441, 786
BmiI	GGNNCC	2 cut(s)	787, 1405
BmrFI	CCNGG	2 cut(s)	130, 524
BmsI	GCATC	7 cut(s)	22, 352, 382, 498, 594, 1336, 1378
BpuMI	CCSGG	2 cut(s)	130, 524
BsaHI	GRCGYC	1 cut(s)	1404
BsaJI	CCNNGG	2 cut(s)	180, 1096
Bsc4I	CCNNNNNNNGG	7 cut(s)	204, 205, 378, 774, 837, 1275, 1337
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	2 cut(s)	453, 1405
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	180, 1096
BseGI	GGATG	7 cut(s)	166, 367, 397, 433, 513, 1246, 1327
BseLI	CCNNNNNNNGG	7 cut(s)	204, 205, 378, 774, 837, 1275, 1337
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	144, 504, 1365
BseNI	ACTGG	2 cut(s)	453, 1405
BseRI	GAGGAG	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	1111
BsgI	GTGCAG	1 cut(s)	980
BshFI	GGCC	3 cut(s)	128, 622, 788
BshNI	GGYRCC	1 cut(s)	1403
BsiSI	CCGG	3 cut(s)	130, 524, 905
BslI	CCNNNNNNNGG	7 cut(s)	204, 205, 378, 774, 837, 1275, 1337
BsmAI	GTCTC	2 cut(s)	1222, 1240
BsmBI	CGTCTC	1 cut(s)	1222
BsmI	GAATGC	1 cut(s)	1075
BsnI	GGCC	3 cut(s)	128, 622, 788
Bsp143I	GATC	3 cut(s)	248, 625, 1042
Bsp19I	CCATGG	1 cut(s)	1096
BspACI	CCGC	4 cut(s)	18, 244, 281, 389
BspANI	GGCC	3 cut(s)	128, 622, 788
BspCNI	CTCAG	3 cut(s)	145, 505, 1364
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	787, 1405
BspMI	ACCTGC	1 cut(s)	787
BspT107I	GGYRCC	1 cut(s)	1403
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	2 cut(s)	453, 1405
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	2 cut(s)	180, 1096
BssMI	GATC	3 cut(s)	248, 625, 1042
BssNI	GRCGYC	1 cut(s)	1404
BssT1I	CCWWGG	1 cut(s)	1096
Bst4CI	ACNGT	5 cut(s)	181, 295, 832, 1312, 1365
BstACI	GRCGYC	1 cut(s)	1404
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	6 cut(s)	37, 333, 585, 1033, 1266, 1302
BstDEI	CTNAG	4 cut(s)	153, 513, 859, 1351
BstDSI	CCRYGG	2 cut(s)	180, 1096
BstENI	CCTNNNNNAGG	1 cut(s)	1335
BstF5I	GGATG	7 cut(s)	166, 367, 397, 433, 513, 1246, 1327
BstH2I	RGCGCY	2 cut(s)	584, 1407
BstHHI	GCGC	2 cut(s)	583, 1406
BstKTI	GATC	3 cut(s)	251, 628, 1045
BstMAI	GTCTC	2 cut(s)	1222, 1240
BstMBI	GATC	3 cut(s)	248, 625, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 580, 593, 668
BstNSI	RCATGY	4 cut(s)	763, 1035, 1253, 1304
BstSCI	CCNGG	2 cut(s)	128, 522
BsuRI	GGCC	3 cut(s)	128, 622, 788
BtgI	CCRYGG	2 cut(s)	180, 1096
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	7 cut(s)	166, 367, 397, 433, 513, 1246, 1327
BtsIMutI	CAGTG	2 cut(s)	446, 1308
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	6 cut(s)	37, 333, 585, 1033, 1266, 1302
CaiI	CAGNNNCTG	1 cut(s)	1400
CciI	TCATGA	1 cut(s)	1015
CfoI	GCGC	2 cut(s)	583, 1406
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	3 cut(s)	127, 441, 786
Csp6I	GTAC	2 cut(s)	73, 710
CspCI	CAANNNNNGTGG	2 cut(s)	904, 939
CviQI	GTAC	2 cut(s)	73, 710
DdeI	CTNAG	4 cut(s)	153, 513, 859, 1351
DinI	GGCGCC	1 cut(s)	1405
DpnI	GATC	3 cut(s)	250, 627, 1044
DpnII	GATC	3 cut(s)	248, 625, 1042
EciI	GGCGGA	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	1096
Eco147I	AGGCCT	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	441
Eco47III	AGCGCT	1 cut(s)	582
Eco57I	CTGAAG	3 cut(s)	140, 1215, 1377
EcoNI	CCTNNNNNAGG	1 cut(s)	1335
EcoT14I	CCWWGG	1 cut(s)	1096
EcoT22I	ATGCAT	2 cut(s)	1033, 1075
EgeI	GGCGCC	1 cut(s)	1405
EheI	GGCGCC	1 cut(s)	1405
ErhI	CCWWGG	1 cut(s)	1096
Esp3I	CGTCTC	1 cut(s)	1222
FauI	CCCGC	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	7 cut(s)	173, 374, 404, 440, 520, 1253, 1314
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	4 cut(s)	396, 489, 663, 956
GlaI	GCGC	2 cut(s)	582, 1405
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	1115
HaeII	RGCGCY	2 cut(s)	584, 1407
HaeIII	GGCC	3 cut(s)	128, 622, 788
HapII	CCGG	3 cut(s)	130, 524, 905
HhaI	GCGC	2 cut(s)	583, 1406
Hin1I	GRCGYC	1 cut(s)	1404
Hin6I	GCGC	2 cut(s)	581, 1404
HinP1I	GCGC	2 cut(s)	581, 1404
HinfI	GANTC	2 cut(s)	115, 1092
HpaII	CCGG	3 cut(s)	130, 524, 905
HphI	GGTGA	4 cut(s)	196, 485, 827, 1237
Hpy166II	GTNNAC	2 cut(s)	633, 689
Hpy188I	TCNGA	4 cut(s)	120, 856, 1318, 1335
Hpy188III	TCNNGA	3 cut(s)	172, 456, 1016
Hpy8I	GTNNAC	2 cut(s)	633, 689
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	5 cut(s)	115, 786, 959, 1193, 1216
HpyCH4III	ACNGT	5 cut(s)	181, 295, 832, 1312, 1365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 580, 593, 668
HpyF3I	CTNAG	4 cut(s)	153, 513, 859, 1351
Hsp92I	GRCGYC	1 cut(s)	1404
HspAI	GCGC	2 cut(s)	581, 1404
KasI	GGCGCC	1 cut(s)	1403
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	248, 625, 1042
LmnI	GCTCC	3 cut(s)	319, 1168, 1210
LweI	GCATC	7 cut(s)	22, 352, 382, 498, 594, 1336, 1378
MaeI	CTAG	4 cut(s)	396, 489, 663, 956
MaeIII	GTNAC	1 cut(s)	1396
MalI	GATC	3 cut(s)	250, 627, 1044
MboI	GATC	3 cut(s)	248, 625, 1042
MboII	GAAGA	6 cut(s)	316, 529, 1128, 1208, 1394, 1397
MluCI	AATT	6 cut(s)	67, 693, 718, 778, 1038, 1411
Mly113I	GGCGCC	1 cut(s)	1404
MlyI	GAGTC	1 cut(s)	124
Mph1103I	ATGCAT	2 cut(s)	1033, 1075
MseI	TTAA	5 cut(s)	264, 678, 722, 909, 1037
MslI	CAYNNNNRTG	2 cut(s)	182, 848
MspI	CCGG	3 cut(s)	130, 524, 905
MspR9I	CCNGG	2 cut(s)	130, 524
Mva1269I	GAATGC	1 cut(s)	1075
MwoI	GCNNNNNNNGC	4 cut(s)	328, 580, 593, 668
NarI	GGCGCC	1 cut(s)	1404
NciI	CCSGG	2 cut(s)	130, 524
NcoI	CCATGG	1 cut(s)	1096
NdeII	GATC	3 cut(s)	248, 625, 1042
NlaIV	GGNNCC	2 cut(s)	787, 1405
NsiI	ATGCAT	2 cut(s)	1033, 1075
NspI	RCATGY	4 cut(s)	763, 1035, 1253, 1304
OliI	CACNNNNGTG	1 cut(s)	182
PaeI	GCATGC	2 cut(s)	1035, 1304
PagI	TCATGA	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	622
PciI	ACATGT	2 cut(s)	759, 1249
PctI	GAATGC	1 cut(s)	1075
PfeI	GAWTC	1 cut(s)	1092
PflMI	CCANNNNNTGG	1 cut(s)	1275
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	123
PluTI	GGCGCC	1 cut(s)	1407
PpsI	GAGTC	1 cut(s)	123
PscI	ACATGT	2 cut(s)	759, 1249
PspFI	CCCAGC	1 cut(s)	1111
PspN4I	GGNNCC	2 cut(s)	787, 1405
PspPI	GGNCC	3 cut(s)	127, 441, 786
PstNI	CAGNNNCTG	1 cut(s)	1400
RsaI	GTAC	2 cut(s)	74, 711
RsaNI	GTAC	2 cut(s)	73, 710
RseI	CAYNNNNRTG	2 cut(s)	182, 848
SaqAI	TTAA	5 cut(s)	264, 678, 722, 909, 1037
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	248, 625, 1042
Sau96I	GGNCC	3 cut(s)	127, 441, 786
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	130, 524
SfaNI	GCATC	7 cut(s)	22, 352, 382, 498, 594, 1336, 1378
SfoI	GGCGCC	1 cut(s)	1405
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	182, 848
SphI	GCATGC	2 cut(s)	1035, 1304
Sse9I	AATT	6 cut(s)	67, 693, 718, 778, 1038, 1411
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	4 cut(s)	18, 244, 281, 389
SspDI	GGCGCC	1 cut(s)	1403
SspMI	CTAG	4 cut(s)	396, 489, 663, 956
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	2 cut(s)	128, 522
StyI	CCWWGG	1 cut(s)	1096
TaaI	ACNGT	5 cut(s)	181, 295, 832, 1312, 1365
TaqI	TCGA	4 cut(s)	408, 756, 1054, 1181
TaqII	GACCGA	1 cut(s)	1335
TasI	AATT	6 cut(s)	67, 693, 718, 778, 1038, 1411
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	1092
Tru1I	TTAA	5 cut(s)	264, 678, 722, 909, 1037
Tru9I	TTAA	5 cut(s)	264, 678, 722, 909, 1037
TscAI	CASTG	2 cut(s)	453, 1315
TspDTI	ATGAA	5 cut(s)	20, 80, 494, 591, 686
TspRI	CASTG	2 cut(s)	453, 1315
Van91I	CCANNNNNTGG	1 cut(s)	1275
VpaK11BI	GGWCC	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	1335
XapI	RAATTY	3 cut(s)	67, 693, 778
XceI	RCATGY	4 cut(s)	763, 1035, 1253, 1304
XspI	CTAG	4 cut(s)	396, 489, 663, 956
Zsp2I	ATGCAT	2 cut(s)	1033, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.