Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

10973659 .. 10974421

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAACACAATGATGTCTGCCTTAGGCCCTTAGCACAGCATGGTCACGGTACAGAGACATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTACGACCACCTTTGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTGATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGATGATGAACCAGCTCGAAAATATGCCATGTAAAGCTGGCGGGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCCTCAATCTTCTGCTCCCTATGTTTTGCTCTCAAGCATATATGCTGAAGAAGGTAGATGGGAGCTGGTAGCGAAGGTGAGACGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGAGCCATTAGTTGGGTAGAAGTTGAAAGTAGAGTGCATGCTTTCACTGTATCAGACCGGCTGCATCCTCTGAAAGAGGAAATATATTCAGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAACGCCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

205

Amino Acids

23.18

Weight (kDa)

5.27

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	105 - 162	3.3e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	477
AciI	CCGC	1 cut(s)	309
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	417, 579
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	74, 178, 491, 562
AluBI	AGCT	5 cut(s)	254, 283, 305, 415, 572
AluI	AGCT	5 cut(s)	254, 283, 305, 415, 572
Alw26I	GTCTC	3 cut(s)	50, 424, 442
AoxI	GGCC	2 cut(s)	26, 327
ApeKI	GCWGC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	2 cut(s)	402, 574
BceAI	ACGGC	1 cut(s)	449
BcoDI	GTCTC	3 cut(s)	50, 424, 442
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	2 cut(s)	538, 580
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	2 cut(s)	100, 522
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	263, 448, 529
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	513
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	28, 329
BsiSI	CCGG	2 cut(s)	101, 523
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	3 cut(s)	50, 424, 442
BsmBI	CGTCTC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	28, 329
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	2 cut(s)	28, 329
BspLI	GGNNCC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	100, 522
BssAI	RCCGGY	2 cut(s)	100, 522
BssMI	GATC	1 cut(s)	238
Bst4CI	ACNGT	3 cut(s)	50, 514, 567
BstC8I	GCNNGC	5 cut(s)	229, 307, 311, 468, 504
BstDEI	CTNAG	2 cut(s)	23, 31
BstF5I	GGATG	3 cut(s)	263, 448, 529
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	3 cut(s)	50, 424, 442
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNSI	RCATGY	3 cut(s)	231, 455, 506
BstV1I	GCAGC	1 cut(s)	513
BstV2I	GAAGAC	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	28, 329
BtsCI	GGATG	3 cut(s)	263, 448, 529
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	5 cut(s)	229, 307, 311, 468, 504
Cfr10I	RCCGGY	2 cut(s)	100, 522
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	51
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	7 cut(s)	41, 79, 184, 228, 297, 452, 503
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	23, 31
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	417, 579
Eco81I	CCTNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	7 cut(s)	44, 82, 187, 231, 300, 455, 506
FatI	CATG	7 cut(s)	40, 78, 183, 227, 296, 451, 502
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	3 cut(s)	270, 455, 516
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	527
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	28, 329
HapII	CCGG	2 cut(s)	101, 523
Hin1II	CATG	7 cut(s)	44, 82, 187, 231, 300, 455, 506
HpaII	CCGG	2 cut(s)	101, 523
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	520, 537
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	155, 395, 418
HpyCH4III	ACNGT	3 cut(s)	50, 514, 567
HpyCH4V	TGCA	5 cut(s)	64, 157, 227, 502, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	23, 31
Hsp92II	CATG	7 cut(s)	44, 82, 187, 231, 300, 455, 506
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	349, 370, 412
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	2 cut(s)	538, 580
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	3 cut(s)	44, 103, 598
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	6 cut(s)	86, 330, 351, 410, 596, 599
MluCI	AATT	2 cut(s)	234, 613
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	5 cut(s)	208, 363, 450, 535, 543
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	101, 523
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	7 cut(s)	44, 82, 187, 231, 300, 455, 506
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	3 cut(s)	231, 455, 506
PaeI	GCATGC	2 cut(s)	231, 506
PciI	ACATGT	1 cut(s)	451
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	1 cut(s)	528
PscI	ACATGT	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	538, 580
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SphI	GCATGC	2 cut(s)	231, 506
Sse9I	AATT	2 cut(s)	234, 613
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	50, 514, 567
TaqI	TCGA	2 cut(s)	250, 285
TasI	AATT	2 cut(s)	234, 613
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	517
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	477
XceI	RCATGY	3 cut(s)	231, 455, 506
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.