Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

13701354 .. 13701731

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCATGTAAAGCTGGCGATCAAGTTTGGAATGCATTACTCGGTGTTAGTAGAATTCATGAAAACACAGAGCTAGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCCTCAATCTTCTGGTGCCTATGTACTACTTTCAAGTATATATGCCAAACATGGGAAATGGGAGTTGGTGGAGAAGGTGAGACAGCTTATGGATGAGAGACAAGTGAGGAAAGAGCGGGCCCTTAGCTGGATAGAAGTTGAAAATAGAGTGAATGCGTTCACTGTATCGGATCAGTTGCATCCTCTGAAAGAAGATATATACTCAGTTTTGGAACAATTAGCTGGCCAGATGGAAGAAGATGTTTCGGTACCTAATTCTGTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

126

Amino Acids

14.3

Weight (kDa)

5.38

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	20 - 82	9.1e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	2 cut(s)	125, 358
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	2 cut(s)	87, 334
AcsI	RAATTY	1 cut(s)	54
AfaI	GTAC	2 cut(s)	135, 360
AfiI	CCNNNNNNNGG	2 cut(s)	162, 237
AgsI	TTSAA	2 cut(s)	144, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	5 cut(s)	14, 73, 196, 237, 332
AluI	AGCT	5 cut(s)	14, 73, 196, 237, 332
Alw26I	GTCTC	2 cut(s)	184, 202
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	3 cut(s)	87, 228, 334
ApaI	GGGCCC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	266
Asp718I	GGTACC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	228, 229
AsuHPI	GGTGA	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	336
BanI	GGYRCC	2 cut(s)	125, 358
BanII	GRGCYC	1 cut(s)	232
BccI	CCATC	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	184, 202
BfaI	CTAG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	228, 229
BmiI	GGNNCC	4 cut(s)	111, 127, 230, 360
BmsI	GCATC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 237
BseGI	GGATG	2 cut(s)	208, 289
BseLI	CCNNNNNNNGG	2 cut(s)	162, 237
BseMII	CTCAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	232
BshFI	GGCC	3 cut(s)	89, 230, 336
BshNI	GGYRCC	2 cut(s)	125, 358
BslI	CCNNNNNNNGG	2 cut(s)	162, 237
BsmAI	GTCTC	2 cut(s)	184, 202
BsmI	GAATGC	2 cut(s)	37, 268
BsnI	GGCC	3 cut(s)	89, 230, 336
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	19, 280
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	3 cut(s)	89, 230, 336
BspCNI	CTCAG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	4 cut(s)	111, 127, 230, 360
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	125, 358
BsrBI	CCGCTC	1 cut(s)	226
BssMI	GATC	2 cut(s)	19, 280
Bst4CI	ACNGT	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	16, 228, 334
BstDEI	CTNAG	2 cut(s)	233, 313
BstF5I	GGATG	2 cut(s)	208, 289
BstKTI	GATC	2 cut(s)	22, 283
BstMAI	GTCTC	2 cut(s)	184, 202
BstMBI	GATC	2 cut(s)	19, 280
BstSLI	GKGCMC	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	89, 230, 336
BtsCI	GGATG	2 cut(s)	208, 289
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	3 cut(s)	16, 228, 334
CciI	TCATGA	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	228, 229
Csp6I	GTAC	2 cut(s)	134, 359
CviAII	CATG	3 cut(s)	6, 59, 161
CviJI	RGCY	9 cut(s)	14, 73, 89, 112, 196, 230, 237, 332, 336
CviKI_1	RGCY	9 cut(s)	14, 73, 89, 112, 196, 230, 237, 332, 336
CviQI	GTAC	2 cut(s)	134, 359
DdeI	CTNAG	2 cut(s)	233, 313
DpnI	GATC	2 cut(s)	21, 282
DpnII	GATC	2 cut(s)	19, 280
EaeI	YGGCCR	2 cut(s)	87, 334
Eco24I	GRGCYC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	3 cut(s)	9, 62, 164
FatI	CATG	3 cut(s)	5, 58, 160
FauI	CCCGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	215, 276
FriOI	GRGCYC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	89, 230, 336
Hin1II	CATG	3 cut(s)	9, 62, 164
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	280, 297
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	35, 289
HpyF3I	CTNAG	2 cut(s)	233, 313
Hsp92II	CATG	3 cut(s)	9, 62, 164
KpnI	GGTACC	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	19, 280
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	4 cut(s)	108, 223, 318, 350
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	74
MalI	GATC	2 cut(s)	21, 282
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	19, 280
MboII	GAAGA	5 cut(s)	90, 111, 314, 356, 359
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	54, 326, 364
MluNI	TGGCCA	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	123, 210, 303, 366
Mox20I	TGGCCA	1 cut(s)	336
Mph1103I	ATGCAT	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	336
Mva1269I	GAATGC	2 cut(s)	37, 268
NdeII	GATC	2 cut(s)	19, 280
NlaIII	CATG	3 cut(s)	9, 62, 164
NlaIV	GGNNCC	4 cut(s)	111, 127, 230, 360
NsiI	ATGCAT	1 cut(s)	37
PagI	TCATGA	1 cut(s)	58
PctI	GAATGC	2 cut(s)	37, 268
PdmI	GAANNNNTTC	1 cut(s)	266
PspN4I	GGNNCC	4 cut(s)	111, 127, 230, 360
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	228, 229
RsaI	GTAC	2 cut(s)	135, 360
RsaNI	GTAC	2 cut(s)	134, 359
Sau3AI	GATC	2 cut(s)	19, 280
Sau96I	GGNCC	2 cut(s)	228, 229
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	16, 75, 99, 189, 198, 239, 334, 364, 377
SfaNI	GCATC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	54, 326, 364
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	3 cut(s)	54, 326, 364
TatI	WGTACW	1 cut(s)	133
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	47, 75
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.