Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000252.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

116750 .. 119665

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000252.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgattgtagatcatccaggtaaaatttcagagcttagttcgccgtggtttggctggaaattctgccggaatccttacagccgtctcctccctcgacctcttattccgaaaagggattcgcttgccaccaagactctctcttttctactgcaacactgtgaagacgctcggtccctcagagaaggcaaatgggttcacttgtatttgaggctcaccggattcaaaagcccgcctttgcttttggctaaccatttgattgggatgtacttcaaatgcggcgatgaggtcgatgcacgcaaagtgtttgataaaatgtttgtgagaaatttgtactcatggaacaatatgctatctgggtatgcgaagatgaggaatttgaaggaggcccggaacttgtttgacaaaattcctgagagggatgttgtgtcctggaacaccatggtgattggttatgcccagagtggggattgtgatgaggttttgtggttttatggagagttgcggaggtcgccggttgggtttaatgagtttagttttgcaggtgttttgattatgtgtgtgaagatgagggaatgggagcttgttaggcaggctcatgggcaggtcttggttgctgggtttttgtcaaatgtggtgctttcgagttcggtggtggatgcttatgccaagtgtggagagatggcggatgctaggagattgttcgatgagatggctgtgagggatgttcttgcttggaccacgctggttttgggacatgccaagtggggtgatatgaaatcagctggtgagttgtttgatcagatgcctgagaagaacccagtgtcatggacatctatgatttcggggtgtgctaggaatggattggggcatgaaacgcttgcattgtttgcagagatgatgctgtttcaagtcaggcctgatcaaagcaaatttgcttcgaatttcaacaagatgtcgaatgaacctagactcgactttccaatgcttgactcaacaggctcggaataccatagctgggtgaccgacgttgagaaccatctcactgcgagagggatattgcctataggcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

357

Amino Acids

40.74

Weight (kDa)

8.11

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	2 cut(s)	530, 592
AccB1I	GGYRCC	1 cut(s)	1067
AciI	CCGC	4 cut(s)	230, 276, 502, 683
AcsI	RAATTY	7 cut(s)	24, 59, 325, 373, 405, 929, 940
AfaI	GTAC	2 cut(s)	266, 332
AfiI	CCNNNNNNNGG	4 cut(s)	50, 462, 463, 1015
AgsI	TTSAA	5 cut(s)	223, 271, 379, 908, 946
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	16, 428
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	4 cut(s)	34, 580, 782, 1014
AluI	AGCT	4 cut(s)	34, 580, 782, 1014
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	384, 914
ApoI	RAATTY	7 cut(s)	24, 59, 325, 373, 405, 929, 940
AspS9I	GGNCC	3 cut(s)	171, 385, 735
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	5 cut(s)	205, 454, 779, 797, 1030
AsuII	TTCGAA	1 cut(s)	938
AvaII	GGWCC	2 cut(s)	171, 735
BanI	GGYRCC	1 cut(s)	1067
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	3 cut(s)	673, 703, 1044
BceAI	ACGGC	2 cut(s)	28, 66
BciT130I	CCWGG	2 cut(s)	18, 430
BclI	TGATCA	2 cut(s)	796, 919
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	690, 852, 966
BfmI	CTRYAG	1 cut(s)	1062
BfuAI	ACCTGC	2 cut(s)	530, 592
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	3 cut(s)	18, 388, 430
Bme18I	GGWCC	2 cut(s)	171, 735
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	171, 385, 735
BmiI	GGNNCC	2 cut(s)	173, 1069
BmrFI	CCNGG	3 cut(s)	18, 388, 430
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	5 cut(s)	280, 646, 676, 792, 888
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	44, 438
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 462, 463, 1015
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	818
BseBI	CCWGG	2 cut(s)	18, 430
BseDI	CCNNGG	2 cut(s)	44, 438
BseGI	GGATG	6 cut(s)	13, 267, 424, 661, 691, 727
BseLI	CCNNNNNNNGG	4 cut(s)	50, 462, 463, 1015
BseMII	CTCAG	3 cut(s)	190, 402, 798
BseNI	ACTGG	1 cut(s)	818
BseRI	GAGGAG	1 cut(s)	77
BseYI	CCCAGC	2 cut(s)	614, 1014
BshFI	GGCC	2 cut(s)	386, 916
BshNI	GGYRCC	1 cut(s)	1067
BsiSI	CCGG	4 cut(s)	67, 216, 388, 512
BslFI	GGGAC	2 cut(s)	157, 765
BslI	CCNNNNNNNGG	4 cut(s)	50, 462, 463, 1015
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	157, 765
BsnI	GGCC	2 cut(s)	386, 916
Bsp119I	TTCGAA	1 cut(s)	938
Bsp143I	GATC	3 cut(s)	10, 796, 919
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	4 cut(s)	230, 276, 502, 683
BspANI	GGCC	2 cut(s)	386, 916
BspCNI	CTCAG	3 cut(s)	189, 403, 799
BspLI	GGNNCC	2 cut(s)	173, 1069
BspMI	ACCTGC	2 cut(s)	530, 592
BspT104I	TTCGAA	1 cut(s)	938
BspT107I	GGYRCC	1 cut(s)	1067
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	818
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	44, 438
BssMI	GATC	3 cut(s)	10, 796, 919
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	18, 430
Bst4CI	ACNGT	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstBI	TTCGAA	1 cut(s)	938
BstC8I	GCNNGC	5 cut(s)	123, 230, 295, 591, 879
BstDEI	CTNAG	4 cut(s)	35, 176, 411, 807
BstDSI	CCRYGG	2 cut(s)	44, 438
BstEII	GGTNACC	1 cut(s)	1018
BstF5I	GGATG	6 cut(s)	13, 267, 424, 661, 691, 727
BstKTI	GATC	3 cut(s)	13, 799, 922
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	10, 796, 919
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 508, 586, 874, 887
BstNI	CCWGG	2 cut(s)	18, 430
BstNSI	RCATGY	1 cut(s)	758
BstPI	GGTNACC	1 cut(s)	1018
BstSCI	CCNGG	3 cut(s)	16, 386, 428
BstSFI	CTRYAG	1 cut(s)	1062
BstV2I	GAAGAC	1 cut(s)	168
BstXI	CCANNNNNNTGG	2 cut(s)	257, 825
BsuRI	GGCC	2 cut(s)	386, 916
BtgI	CCRYGG	2 cut(s)	44, 438
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	6 cut(s)	13, 267, 424, 661, 691, 727
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	3 cut(s)	154, 825, 1041
BveI	ACCTGC	2 cut(s)	530, 592
Cac8I	GCNNGC	5 cut(s)	123, 230, 295, 591, 879
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	3 cut(s)	171, 385, 735
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	265, 331
CviAII	CATG	6 cut(s)	336, 439, 596, 755, 825, 869
CviQI	GTAC	2 cut(s)	265, 331
DdeI	CTNAG	4 cut(s)	35, 176, 411, 807
DpnI	GATC	3 cut(s)	12, 798, 921
DpnII	GATC	3 cut(s)	10, 796, 919
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	916
Eco47I	GGWCC	2 cut(s)	171, 735
Eco91I	GGTNACC	1 cut(s)	1018
EcoO65I	GGTNACC	1 cut(s)	1018
EcoRII	CCWGG	2 cut(s)	16, 428
EcoT14I	CCWWGG	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	6 cut(s)	339, 442, 599, 758, 828, 872
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FaqI	GGGAC	2 cut(s)	157, 765
FatI	CATG	6 cut(s)	335, 438, 595, 754, 824, 868
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	2 cut(s)	796, 919
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	5 cut(s)	274, 431, 668, 698, 734
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	3 cut(s)	690, 852, 966
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	2 cut(s)	618, 1018
HaeIII	GGCC	2 cut(s)	386, 916
HapII	CCGG	4 cut(s)	67, 216, 388, 512
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	6 cut(s)	339, 442, 599, 758, 828, 872
HinfI	GANTC	6 cut(s)	70, 116, 133, 219, 969, 989
HpaII	CCGG	4 cut(s)	67, 216, 388, 512
HphI	GGTGA	5 cut(s)	205, 454, 779, 797, 1030
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	5 cut(s)	31, 108, 179, 801, 1003
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	1028
HpyAV	CCTTC	2 cut(s)	176, 373
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	5 cut(s)	151, 293, 539, 881, 890
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 508, 586, 874, 887
HpyF3I	CTNAG	4 cut(s)	35, 176, 411, 807
HpySE526I	ACGT	1 cut(s)	1026
Hsp92II	CATG	6 cut(s)	339, 442, 599, 758, 828, 872
Ksp22I	TGATCA	2 cut(s)	796, 919
Kzo9I	GATC	3 cut(s)	10, 796, 919
LmnI	GCTCC	1 cut(s)	577
LweI	GCATC	5 cut(s)	280, 646, 676, 792, 888
MaeI	CTAG	3 cut(s)	690, 852, 966
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	1 cut(s)	1018
MalI	GATC	3 cut(s)	12, 798, 921
MboI	GATC	3 cut(s)	10, 796, 919
MboII	GAAGA	4 cut(s)	173, 376, 574, 823
MluCI	AATT	7 cut(s)	24, 59, 325, 373, 405, 929, 940
MlyI	GAGTC	3 cut(s)	127, 963, 983
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	4 cut(s)	67, 216, 388, 512
MspR9I	CCNGG	3 cut(s)	18, 388, 430
MvaI	CCWGG	2 cut(s)	18, 430
MwoI	GCNNNNNNNGC	5 cut(s)	40, 508, 586, 874, 887
NciI	CCSGG	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	10, 796, 919
NlaIII	CATG	6 cut(s)	339, 442, 599, 758, 828, 872
NlaIV	GGNNCC	2 cut(s)	173, 1069
NmuCI	GTSAC	1 cut(s)	1018
NspI	RCATGY	1 cut(s)	758
NspV	TTCGAA	1 cut(s)	938
OliI	CACNNNNGTG	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	916
PfeI	GAWTC	3 cut(s)	70, 116, 219
PfoI	TCCNGGA	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	127, 963, 983
PpsI	GAGTC	3 cut(s)	127, 963, 983
Psp6I	CCWGG	2 cut(s)	16, 428
PspEI	GGTNACC	1 cut(s)	1018
PspFI	CCCAGC	2 cut(s)	614, 1014
PspGI	CCWGG	2 cut(s)	16, 428
PspN4I	GGNNCC	2 cut(s)	173, 1069
PspPI	GGNCC	3 cut(s)	171, 385, 735
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	266, 332
RsaNI	GTAC	2 cut(s)	265, 331
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	3 cut(s)	10, 796, 919
Sau96I	GGNCC	3 cut(s)	171, 385, 735
SchI	GAGTC	3 cut(s)	127, 963, 983
ScrFI	CCNGG	3 cut(s)	18, 388, 430
SfaNI	GCATC	5 cut(s)	280, 646, 676, 792, 888
SfcI	CTRYAG	1 cut(s)	1062
SfuI	TTCGAA	1 cut(s)	938
SinI	GGWCC	2 cut(s)	171, 735
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	7 cut(s)	24, 59, 325, 373, 405, 929, 940
SseBI	AGGCCT	1 cut(s)	916
SsiI	CCGC	4 cut(s)	230, 276, 502, 683
SspMI	CTAG	3 cut(s)	690, 852, 966
StuI	AGGCCT	1 cut(s)	916
StyD4I	CCNGG	3 cut(s)	16, 386, 428
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	7 cut(s)	94, 288, 641, 702, 938, 956, 972
TaqII	GACCGA	2 cut(s)	159, 1037
TasI	AATT	7 cut(s)	24, 59, 325, 373, 405, 929, 940
TatI	WGTACW	2 cut(s)	264, 330
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	70, 116, 219
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	3 cut(s)	161, 825, 1048
TseFI	GTSAC	1 cut(s)	1018
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	3 cut(s)	788, 885, 975
TspRI	CASTG	3 cut(s)	161, 825, 1048
VpaK11BI	GGWCC	2 cut(s)	171, 735
XapI	RAATTY	7 cut(s)	24, 59, 325, 373, 405, 929, 940
XceI	RCATGY	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XspI	CTAG	3 cut(s)	690, 852, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.