Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

9111711 .. 9112283

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTATTCCAAATGCGGCAATTTGGGGGCCGGAAGGCAGGTTTTCAAGCTCATGGGTGATAAGCAAGACACCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGACATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCAGTTACGACCACCTTGGTTGTCATTCTCAATGATTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTGATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGTTGATGAACCGGCTCGAAAATATGCCATGTAAAGCTGGCGGTCAAGTTTGGAATGCATTACTCGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCTTCAATCTTCTGCTCCCTCTGTTTTGCTTTCGAGCATATATGCTGAAGAAGGTAGATGGGAGCGGGTAGAGAAGGTGAGACGGCTTATGGATGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

190

Amino Acids

21.22

Weight (kDa)

5.37

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 70	1.2e-08	PPR repeat family
PPR	PF01535	25 - 55	1.2e-06	PPR repeat
E_motif	PF20431	140 - 188	1.3e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccBSI	CCGCTC	1 cut(s)	535
AciI	CCGC	3 cut(s)	15, 378, 535
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	4 cut(s)	46, 143, 247, 476
AluBI	AGCT	5 cut(s)	49, 323, 374, 433, 472
AluI	AGCT	5 cut(s)	49, 323, 374, 433, 472
Alw26I	GTCTC	2 cut(s)	119, 544
AoxI	GGCC	2 cut(s)	27, 447
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	68, 559
BbsI	GAAGAC	1 cut(s)	150
BccI	CCATC	1 cut(s)	522
BceAI	ACGGC	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	119, 544
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	183, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	183, 418
BseGI	GGATG	2 cut(s)	332, 568
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	29, 449
BsiSI	CCGG	2 cut(s)	30, 349
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	119, 544
BsmBI	CGTCTC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	29, 449
Bsp143I	GATC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	3 cut(s)	15, 378, 535
BspANI	GGCC	2 cut(s)	29, 449
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	183, 418
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	183, 418
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	298, 376
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	332, 568
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	119, 544
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	29, 449
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	332, 568
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	298, 376
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	8 cut(s)	52, 110, 116, 148, 253, 297, 366, 419
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	183, 418
Eco57I	CTGAAG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	183, 418
EcoT22I	ATGCAT	2 cut(s)	298, 397
ErhI	CCWWGG	2 cut(s)	183, 418
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	8 cut(s)	55, 113, 119, 151, 256, 300, 369, 422
FatI	CATG	8 cut(s)	51, 109, 115, 147, 252, 296, 365, 418
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	16
GsaI	CCCAGC	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	29, 449
HapII	CCGG	2 cut(s)	30, 349
Hin1II	CATG	8 cut(s)	55, 113, 119, 151, 256, 300, 369, 422
HinfI	GANTC	1 cut(s)	414
HpaII	CCGG	2 cut(s)	30, 349
HphI	GGTGA	2 cut(s)	68, 559
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	4 cut(s)	27, 224, 515, 538
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	133, 226, 296, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	8 cut(s)	55, 113, 119, 151, 256, 300, 369, 422
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	469, 490, 532
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	155, 450, 471, 530
MluCI	AATT	2 cut(s)	19, 303
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	2 cut(s)	277, 499
Mph1103I	ATGCAT	2 cut(s)	298, 397
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	2 cut(s)	89, 114
MspI	CCGG	2 cut(s)	30, 349
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	8 cut(s)	55, 113, 119, 151, 256, 300, 369, 422
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	2 cut(s)	298, 397
NspI	RCATGY	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	149
RseI	CAYNNNNRTG	2 cut(s)	89, 114
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	89, 114
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	2 cut(s)	19, 303
SsiI	CCGC	3 cut(s)	15, 378, 535
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	183, 418
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	319, 354, 503
TasI	AATT	2 cut(s)	19, 303
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	359
Tth111I	GACNNNGTC	1 cut(s)	149
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	2 cut(s)	298, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.