Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000252.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

9122 .. 9826

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000252.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgagggaatgggagcttattaggcaggctcatgggcaggttttggttgctgggttcttgtcgaatgtggtgctttcgagttcggtggtggatgcttatgccaagtgtggagagatggcggatgccaggagattgttcgatgagatggctgtgagggatgttcttgcttggaccactctggtttcgggatatgccgaatggggtgatatgaaatcagctagtgagttgtttgatcggatgcctgagaagaacccggtgtcatggacatctatgatttcggggtatgctaggaatggattggggcatgaagcgcttgcattttttgcagagatgatgctgtttcaagtgaggcctgatcagtttacctttagtagttgcctttgtgcttgtgctagtatagcttcgcttaagcatggtaaacaaattcatgcctctttaatacgaagcaatttaagacccaacacgattgttgtgagttctcttatcgacatgtattccaaatgcggcaatttgggggccggaaggcaggtattcaagctcatgggtgataggcaagacaccgtgttatggaacacaatgatgtctgccttagcacagcatggtcatggtatagaggcattgcagatgtttgaagacatggtcagttcaggtgtaaagccggttacgagttacgaccaccttggttgtcattctcaatgcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

234

Amino Acids

25.88

Weight (kDa)

6.23

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	28, 517
AciI	CCGC	2 cut(s)	119, 504
AcsI	RAATTY	1 cut(s)	423
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflII	CTTAAG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	344, 535, 632
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	16, 218, 401, 538
AluI	AGCT	4 cut(s)	16, 218, 401, 538
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	2 cut(s)	350, 516
ApoI	RAATTY	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	171, 516
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	215, 557
AvaII	GGWCC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	639
BccI	CCATC	2 cut(s)	109, 139
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	3 cut(s)	219, 288, 393
BfoI	RGCGCY	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	2 cut(s)	28, 517
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	127, 254
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 516
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	127, 254
BmsI	GCATC	4 cut(s)	82, 112, 228, 324
BpiI	GAAGAC	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	589
BpuMI	CCSGG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse118I	RCCGGY	1 cut(s)	658
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	4 cut(s)	97, 127, 163, 243
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	352, 518
BsiSI	CCGG	3 cut(s)	254, 519, 659
BslI	CCNNNNNNNGG	1 cut(s)	567
BsnI	GGCC	2 cut(s)	352, 518
Bsp143I	GATC	2 cut(s)	232, 355
BspACI	CCGC	2 cut(s)	119, 504
BspANI	GGCC	2 cut(s)	352, 518
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	2 cut(s)	28, 517
BspTI	CTTAAG	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	2 cut(s)	232, 355
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	562
BstAFI	CTTAAG	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	27, 315
BstDEI	CTNAG	2 cut(s)	243, 589
BstF5I	GGATG	4 cut(s)	97, 127, 163, 243
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	235, 358
BstMBI	GATC	2 cut(s)	232, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 310, 323, 398
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	125, 252
BstV2I	GAAGAC	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	352, 518
BtsCI	GGATG	4 cut(s)	97, 127, 163, 243
BveI	ACCTGC	2 cut(s)	28, 517
Cac8I	GCNNGC	2 cut(s)	27, 315
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	171, 516
CspCI	CAANNNNNGTGG	2 cut(s)	665, 700
CviJI	RGCY	9 cut(s)	16, 29, 149, 218, 352, 401, 518, 538, 658
CviKI_1	RGCY	9 cut(s)	16, 29, 149, 218, 352, 401, 518, 538, 658
DdeI	CTNAG	2 cut(s)	243, 589
DpnI	GATC	2 cut(s)	234, 357
DpnII	GATC	2 cut(s)	232, 355
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	171
Eco47III	AGCGCT	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	4 cut(s)	104, 134, 170, 250
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	3 cut(s)	219, 288, 393
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	505
GsaI	CCCAGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	352, 518
HapII	CCGG	3 cut(s)	254, 519, 659
HhaI	GCGC	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HpaII	CCGG	3 cut(s)	254, 519, 659
HphI	GGTGA	2 cut(s)	215, 557
Hpy166II	GTNNAC	2 cut(s)	363, 419
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	2 cut(s)	363, 419
HpyAV	CCTTC	1 cut(s)	516
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4V	TGCA	3 cut(s)	317, 326, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 310, 323, 398
HpyF3I	CTNAG	2 cut(s)	243, 589
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	232, 355
LmnI	GCTCC	1 cut(s)	13
LweI	GCATC	4 cut(s)	82, 112, 228, 324
MaeI	CTAG	3 cut(s)	219, 288, 393
MaeIII	GTNAC	2 cut(s)	661, 668
MalI	GATC	2 cut(s)	234, 357
MboI	GATC	2 cut(s)	232, 355
MboII	GAAGA	2 cut(s)	259, 644
MluCI	AATT	3 cut(s)	423, 448, 508
MnlI	CCTC	4 cut(s)	147, 342, 442, 607
MseI	TTAA	3 cut(s)	408, 437, 452
MslI	CAYNNNNRTG	2 cut(s)	578, 603
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	3 cut(s)	254, 519, 659
MspR9I	CCNGG	2 cut(s)	127, 254
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	22, 310, 323, 398
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	232, 355
NlaIV	GGNNCC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	352
PciI	ACATGT	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	1 cut(s)	506
PscI	ACATGT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	171, 516
PsyI	GACNNNGTC	1 cut(s)	638
RseI	CAYNNNNRTG	2 cut(s)	578, 603
SaqAI	TTAA	3 cut(s)	408, 437, 452
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	2 cut(s)	232, 355
Sau96I	GGNCC	2 cut(s)	171, 516
ScrFI	CCNGG	2 cut(s)	127, 254
SetI	ASST	9 cut(s)	18, 42, 220, 368, 403, 531, 540, 652, 681
SfaNI	GCATC	4 cut(s)	82, 112, 228, 324
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	578, 603
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	423, 448, 508
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	119, 504
SspMI	CTAG	3 cut(s)	219, 288, 393
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	125, 252
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	562
TaqI	TCGA	4 cut(s)	62, 77, 138, 486
TasI	AATT	3 cut(s)	423, 448, 508
TauI	GCSGC	1 cut(s)	507
Tru1I	TTAA	3 cut(s)	408, 437, 452
Tru9I	TTAA	3 cut(s)	408, 437, 452
TspDTI	ATGAA	3 cut(s)	224, 321, 416
Tth111I	GACNNNGTC	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	423
XceI	RCATGY	1 cut(s)	493
XspI	CTAG	3 cut(s)	219, 288, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.