Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002634.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

98410 .. 99230

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002634.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgaggagtctgaaggaggcccggaacttgtttgagcaaatgcctgagagggatgttgtgttctggaacaccgtggtgattggttatgcccagaatggggaatgtgataaggctttgaggttttatagagagttgcggagatcgtcggcaagctcatgggcaagtttggttgcttgggttttgtcaaatgtggtactttcgagttcggtggtggatgtttatgccaagtgtggggagatggcggatgctaggagattgttcgatgagatggctgtgagggatgttcttgcttggaccacactggtttcgggatatgccaaatggggtgatatgaaatcagctagtgagttgtttgattggatgcctgagaagaacccggtgtcatgggcatctatgatttcggggtatgttaggaatggattggggcatgaagcgcttgcattgtttgcagagatgatgctgtttcaaatcaggcctgatcagtttacctttagtagttgcctttgtgcttgtgctggtatagcttcttttaagcatggtaaacaaattcatgcctctttagtacgaagtaatttaagacccaacacgattgttgtgagttctcttatcgacatgtattccaaatgggggaatttgggggccagaaggcaggtattcaagctcatgggtgatatgcaagacaccgtgttatggaacacaatgatgtctgacttagcacaacatggtcatagtatagaggcattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

248

Amino Acids

27.99

Weight (kDa)

7.66

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	640
AciI	CCGC	2 cut(s)	136, 242
AcsI	RAATTY	2 cut(s)	546, 631
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	195, 564
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	5 cut(s)	96, 97, 231, 627, 690
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	2 cut(s)	467, 658
AleI	CACNNNNGTG	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	4 cut(s)	153, 341, 524, 661
AluI	AGCT	4 cut(s)	153, 341, 524, 661
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	3 cut(s)	18, 473, 639
ApoI	RAATTY	2 cut(s)	546, 631
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	19, 294, 639
AsuC2I	CCSGG	2 cut(s)	22, 377
AsuHPI	GGTGA	3 cut(s)	88, 338, 680
AvaII	GGWCC	1 cut(s)	294
BccI	CCATC	2 cut(s)	232, 262
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	22, 377
BfaI	CTAG	2 cut(s)	249, 342
BfoI	RGCGCY	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	22, 377
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	3 cut(s)	19, 294, 639
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	2 cut(s)	22, 377
BmsI	GCATC	4 cut(s)	235, 351, 398, 447
BpuMI	CCSGG	2 cut(s)	22, 377
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	5 cut(s)	96, 97, 231, 627, 690
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	5 cut(s)	58, 220, 250, 286, 366
BseLI	CCNNNNNNNGG	5 cut(s)	96, 97, 231, 627, 690
BseMII	CTCAG	2 cut(s)	36, 357
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	19
BshFI	GGCC	3 cut(s)	20, 475, 641
BsiSI	CCGG	2 cut(s)	22, 377
BslI	CCNNNNNNNGG	5 cut(s)	96, 97, 231, 627, 690
BsnI	GGCC	3 cut(s)	20, 475, 641
Bsp143I	GATC	2 cut(s)	140, 478
BspACI	CCGC	2 cut(s)	136, 242
BspANI	GGCC	3 cut(s)	20, 475, 641
BspCNI	CTCAG	2 cut(s)	37, 358
BspLI	GGNNCC	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	140, 478
Bst4CI	ACNGT	2 cut(s)	73, 685
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	151, 438
BstDEI	CTNAG	3 cut(s)	45, 366, 712
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	5 cut(s)	58, 220, 250, 286, 366
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	143, 481
BstMBI	GATC	2 cut(s)	140, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 446, 521
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	20, 375
BsuRI	GGCC	3 cut(s)	20, 475, 641
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	58, 220, 250, 286, 366
BtsIMutI	CAGTG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	151, 438
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	19, 294, 639
Csp6I	GTAC	2 cut(s)	194, 563
CviAII	CATG	8 cut(s)	156, 384, 428, 536, 551, 613, 664, 722
CviJI	RGCY	9 cut(s)	20, 113, 153, 272, 341, 475, 524, 641, 661
CviKI_1	RGCY	9 cut(s)	20, 113, 153, 272, 341, 475, 524, 641, 661
CviQI	GTAC	2 cut(s)	194, 563
DdeI	CTNAG	3 cut(s)	45, 366, 712
DpnI	GATC	2 cut(s)	142, 480
DpnII	GATC	2 cut(s)	140, 478
EciI	GGCGGA	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	294
Eco47III	AGCGCT	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	32
FaeI	CATG	8 cut(s)	159, 387, 431, 539, 554, 616, 667, 725
FatI	CATG	8 cut(s)	155, 383, 427, 535, 550, 612, 663, 721
FbaI	TGATCA	1 cut(s)	478
FokI	GGATG	5 cut(s)	65, 227, 257, 293, 373
FspBI	CTAG	2 cut(s)	249, 342
GlaI	GCGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	20, 475, 641
HapII	CCGG	2 cut(s)	22, 377
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	8 cut(s)	159, 387, 431, 539, 554, 616, 667, 725
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	22, 377
HphI	GGTGA	3 cut(s)	88, 338, 680
Hpy166II	GTNNAC	2 cut(s)	486, 542
Hpy188I	TCNGA	2 cut(s)	12, 709
Hpy188III	TCNNGA	2 cut(s)	64, 309
Hpy8I	GTNNAC	2 cut(s)	486, 542
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	7, 639
HpyCH4III	ACNGT	2 cut(s)	73, 685
HpyCH4V	TGCA	3 cut(s)	440, 449, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 446, 521
HpyF3I	CTNAG	3 cut(s)	45, 366, 712
Hsp92II	CATG	8 cut(s)	159, 387, 431, 539, 554, 616, 667, 725
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	140, 478
LweI	GCATC	4 cut(s)	235, 351, 398, 447
MaeI	CTAG	2 cut(s)	249, 342
MalI	GATC	2 cut(s)	142, 480
MboI	GATC	2 cut(s)	140, 478
MboII	GAAGA	1 cut(s)	382
MluCI	AATT	3 cut(s)	546, 571, 631
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	10, 42, 111, 270, 565, 730
MseI	TTAA	2 cut(s)	531, 575
MslI	CAYNNNNRTG	2 cut(s)	74, 701
MspI	CCGG	2 cut(s)	22, 377
MspR9I	CCNGG	2 cut(s)	22, 377
MwoI	GCNNNNNNNGC	3 cut(s)	433, 446, 521
NciI	CCSGG	2 cut(s)	22, 377
NdeII	GATC	2 cut(s)	140, 478
NlaIII	CATG	8 cut(s)	159, 387, 431, 539, 554, 616, 667, 725
NlaIV	GGNNCC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	475
PciI	ACATGT	1 cut(s)	612
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PscI	ACATGT	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	3 cut(s)	19, 294, 639
RsaI	GTAC	2 cut(s)	195, 564
RsaNI	GTAC	2 cut(s)	194, 563
RseI	CAYNNNNRTG	2 cut(s)	74, 701
SaqAI	TTAA	2 cut(s)	531, 575
Sau3AI	GATC	2 cut(s)	140, 478
Sau96I	GGNCC	3 cut(s)	19, 294, 639
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	22, 377
SetI	ASST	7 cut(s)	122, 155, 343, 491, 526, 654, 663
SfaNI	GCATC	4 cut(s)	235, 351, 398, 447
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	74, 701
Sse9I	AATT	3 cut(s)	546, 571, 631
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	2 cut(s)	136, 242
SspMI	CTAG	2 cut(s)	249, 342
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	20, 375
TaaI	ACNGT	2 cut(s)	73, 685
TaqI	TCGA	3 cut(s)	200, 261, 609
TasI	AATT	3 cut(s)	546, 571, 631
Tru1I	TTAA	2 cut(s)	531, 575
Tru9I	TTAA	2 cut(s)	531, 575
TscAI	CASTG	1 cut(s)	306
TspDTI	ATGAA	3 cut(s)	347, 444, 539
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	2 cut(s)	546, 631
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	2 cut(s)	249, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.