Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

10893267 .. 10894376

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAGATGCCAGGAGATTGTTCTATGAGATGACTGTGAGGTATGTTCTTGCTTGGACCACACTGGTTTCGAGATATGCCAAATGGGATATGAAATCAGCTAGTGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCAATGATTTCGGGATATGCTAGGAATGGATTGGGGCATGAAGTGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAGTCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAACAAATGCATGCCTCTTTAGTAAGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGTGGCAATTTGGGGGCCAGAAGGCAGGTATTCAAGCTCATGGGTGACAAGCAAGACACTGTGTTATGCAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTACAGAGACATTGCAGATGTTTGAAAACATGGTCAGTTCAGGTGTAAAGCCGGTTACGACCACATTTGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCATAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTCATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTAGAGCTAGATGTTTTGATGAGTTGATGAACCAGCTCGAAAATATGCCATGTAAAGCTGGCGGTCAAGTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCTGAACACCTTATCGAGTTGGAGCCTCAATCTTCTGCTCCCTATGTTTTGCTTTCGAACATATATGCTGAAGAAGGTAGATGGGAGCTGGTAGAGAAGGTGAGATGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGAGCCATTAGTTGGGTAGAAGTTCAAAGTAGAGTGCATGCTTTCACTGTATCAGACTGGTTGCATCCTCTGAAAGATAAAATATACTCAGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAACGCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

369

Amino Acids

41.86

Weight (kDa)

6.54

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	45 - 92	6.9e-10	PPR repeat family
PPR	PF01535	47 - 73	1.1e-07	PPR repeat
PPR_2	PF13041	147 - 194	1.4e-09	PPR repeat family
E_motif	PF20431	264 - 326	3.7e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	969
AciI	CCGC	1 cut(s)	750
AcuI	CTGAAG	2 cut(s)	909, 1071
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	969
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	372, 943
AgsI	TTSAA	6 cut(s)	227, 418, 515, 619, 983, 1054
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	9 cut(s)	101, 284, 421, 695, 724, 746, 805, 907, 1064
AluI	AGCT	9 cut(s)	101, 284, 421, 695, 724, 746, 805, 907, 1064
Alw26I	GTCTC	2 cut(s)	491, 934
AoxI	GGCC	2 cut(s)	233, 399
AspS9I	GGNCC	2 cut(s)	57, 399
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	440, 931
AsuII	TTCGAA	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	57
BccI	CCATC	3 cut(s)	894, 918, 1066
BciT130I	CCWGG	1 cut(s)	13
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	491, 934
BfaI	CTAG	5 cut(s)	102, 171, 276, 593, 696
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	13, 137
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 399
BmiI	GGNNCC	2 cut(s)	400, 843
BmrFI	CCNGG	2 cut(s)	13, 137
BmsI	GCATC	4 cut(s)	111, 207, 1030, 1072
Bpu10I	CCTNAGC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	875
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	1 cut(s)	969
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	69, 1019
Bse3DI	GCAATG	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	790
BseGI	GGATG	3 cut(s)	126, 940, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	969
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	117, 1059, 1092
BseNI	ACTGG	2 cut(s)	69, 1019
BseYI	CCCAGC	1 cut(s)	805
BsgI	GTGCAG	1 cut(s)	617
BshFI	GGCC	2 cut(s)	235, 401
BsiSI	CCGG	2 cut(s)	137, 542
BslI	CCNNNNNNNGG	1 cut(s)	969
BsmAI	GTCTC	2 cut(s)	491, 934
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	2 cut(s)	235, 401
Bsp119I	TTCGAA	1 cut(s)	875
Bsp143I	GATC	3 cut(s)	115, 238, 679
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	1 cut(s)	750
BspANI	GGCC	2 cut(s)	235, 401
BspCNI	CTCAG	3 cut(s)	118, 1058, 1093
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	400, 843
BspMI	ACCTGC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	875
BspTI	CTTAAG	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	69, 1019
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	790
BssMI	GATC	3 cut(s)	115, 238, 679
BssT1I	CCWWGG	1 cut(s)	790
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	37, 445, 1006, 1059
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	2 cut(s)	193, 206
BstBI	TTCGAA	1 cut(s)	875
BstC8I	GCNNGC	6 cut(s)	198, 312, 670, 748, 960, 996
BstDEI	CTNAG	4 cut(s)	126, 472, 1045, 1101
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	3 cut(s)	126, 940, 1021
BstKTI	GATC	3 cut(s)	118, 241, 682
BstMAI	GTCTC	2 cut(s)	491, 934
BstMBI	GATC	3 cut(s)	115, 238, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 206, 281, 604
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	5 cut(s)	314, 376, 672, 947, 998
BstSCI	CCNGG	2 cut(s)	11, 135
BsuRI	GGCC	2 cut(s)	235, 401
BtgI	CCRYGG	1 cut(s)	790
BtsCI	GGATG	3 cut(s)	126, 940, 1021
BtsIMutI	CAGTG	3 cut(s)	62, 441, 1002
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	6 cut(s)	198, 312, 670, 748, 960, 996
CciI	TCATGA	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	57, 399
Csp6I	GTAC	1 cut(s)	492
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	4 cut(s)	126, 472, 1045, 1101
DpnI	GATC	3 cut(s)	117, 240, 681
DpnII	GATC	3 cut(s)	115, 238, 679
Eco130I	CCWWGG	1 cut(s)	790
Eco147I	AGGCCT	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	909, 1071
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	790
EcoT22I	ATGCAT	3 cut(s)	312, 670, 769
ErhI	CCWWGG	1 cut(s)	790
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	3 cut(s)	133, 947, 1008
FspBI	CTAG	5 cut(s)	102, 171, 276, 593, 696
GsaI	CCCAGC	1 cut(s)	809
HaeIII	GGCC	2 cut(s)	235, 401
HapII	CCGG	2 cut(s)	137, 542
HinfI	GANTC	1 cut(s)	786
HpaII	CCGG	2 cut(s)	137, 542
HphI	GGTGA	2 cut(s)	440, 931
Hpy166II	GTNNAC	2 cut(s)	246, 302
Hpy188I	TCNGA	3 cut(s)	120, 1012, 1029
Hpy188III	TCNNGA	3 cut(s)	72, 162, 653
Hpy8I	GTNNAC	2 cut(s)	246, 302
HpyAV	CCTTC	4 cut(s)	399, 596, 887, 910
HpyCH4III	ACNGT	4 cut(s)	37, 445, 1006, 1059
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 206, 281, 604
HpyF3I	CTNAG	4 cut(s)	126, 472, 1045, 1101
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	115, 238, 679
LmnI	GCTCC	3 cut(s)	841, 862, 904
LweI	GCATC	4 cut(s)	111, 207, 1030, 1072
MaeI	CTAG	5 cut(s)	102, 171, 276, 593, 696
MaeIII	GTNAC	3 cut(s)	428, 544, 1090
MalI	GATC	3 cut(s)	117, 240, 681
MboI	GATC	3 cut(s)	115, 238, 679
MboII	GAAGA	6 cut(s)	142, 822, 843, 902, 1088, 1091
MluCI	AATT	4 cut(s)	331, 391, 675, 1105
MmeI	TCCRAC	1 cut(s)	819
MnlI	CCTC	7 cut(s)	33, 325, 649, 660, 855, 942, 1035
Mph1103I	ATGCAT	3 cut(s)	312, 670, 769
MseI	TTAA	3 cut(s)	291, 335, 674
MslI	CAYNNNNRTG	2 cut(s)	461, 486
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	137, 542
MspR9I	CCNGG	2 cut(s)	13, 137
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	4 cut(s)	193, 206, 281, 604
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	3 cut(s)	115, 238, 679
NlaIV	GGNNCC	2 cut(s)	400, 843
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	3 cut(s)	312, 670, 769
NspI	RCATGY	5 cut(s)	314, 376, 672, 947, 998
NspV	TTCGAA	1 cut(s)	875
PaeI	GCATGC	3 cut(s)	314, 672, 998
PagI	TCATGA	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	235
PciI	ACATGT	2 cut(s)	372, 943
PctI	GAATGC	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	786
PflMI	CCANNNNNTGG	1 cut(s)	969
PscI	ACATGT	2 cut(s)	372, 943
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	400, 843
PspPI	GGNCC	2 cut(s)	57, 399
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	2 cut(s)	461, 486
SaqAI	TTAA	3 cut(s)	291, 335, 674
Sau3AI	GATC	3 cut(s)	115, 238, 679
Sau96I	GGNCC	2 cut(s)	57, 399
ScrFI	CCNGG	2 cut(s)	13, 137
SfaNI	GCATC	4 cut(s)	111, 207, 1030, 1072
SfuI	TTCGAA	1 cut(s)	875
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	461, 486
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	3 cut(s)	314, 672, 998
Sse9I	AATT	4 cut(s)	331, 391, 675, 1105
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	750
SspMI	CTAG	5 cut(s)	102, 171, 276, 593, 696
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	2 cut(s)	11, 135
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	4 cut(s)	37, 445, 1006, 1059
TaqI	TCGA	5 cut(s)	71, 369, 726, 834, 875
TasI	AATT	4 cut(s)	331, 391, 675, 1105
TfiI	GAWTC	1 cut(s)	786
Tru1I	TTAA	3 cut(s)	291, 335, 674
Tru9I	TTAA	3 cut(s)	291, 335, 674
TscAI	CASTG	3 cut(s)	69, 448, 1009
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	107, 204, 731
TspRI	CASTG	3 cut(s)	69, 448, 1009
Van91I	CCANNNNNTGG	1 cut(s)	969
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	5 cut(s)	314, 376, 672, 947, 998
XspI	CTAG	5 cut(s)	102, 171, 276, 593, 696
Zsp2I	ATGCAT	3 cut(s)	312, 670, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.