Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

11138776 .. 11139366

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATGCTGTTTCAAGTCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTACTATAGCTTCACTTAAGCATGGTAAACAAATTCATGCCTCTTTAATACGAAGTAATTTAAGACCCAACATGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAATTTGGGGGCCGGAAGGCAGGTATTCAAGCTCATGGGTGATAAGCAAGACACTGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTACAGAGACATTGCTGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTAATACCACCTTTGTTGTCATTCTAAATGCTTGTAGTCATTCTGGTCTAGTTCAGGAAGGGCGTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTCATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGTTGATGAACCAGCTCGAAAATATGCCATGTAAAGCCAGCGGTCAAGTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

196

Amino Acids

21.63

Weight (kDa)

7.06

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 123	2.7e-10	PPR repeat family
PPR	PF01535	78 - 108	6.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AciI	CCGC	2 cut(s)	174, 537
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	14, 205, 302, 406
AluBI	AGCT	4 cut(s)	71, 208, 482, 511
AluI	AGCT	4 cut(s)	71, 208, 482, 511
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	20, 186
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	577
Bse118I	RCCGGY	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	22, 188
BsiSI	CCGG	2 cut(s)	189, 329
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	22, 188
Bsp143I	GATC	2 cut(s)	25, 466
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	2 cut(s)	174, 537
BspANI	GGCC	2 cut(s)	22, 188
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	25, 466
BssT1I	CCWWGG	1 cut(s)	577
Bst4CI	ACNGT	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	457, 535
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	2 cut(s)	28, 469
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	25, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	163, 459
BstSFI	CTRYAG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	22, 188
BtgI	CCRYGG	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	457, 535
CciI	TCATGA	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviJI	RGCY	9 cut(s)	22, 71, 188, 208, 328, 400, 482, 511, 533
CviKI_1	RGCY	9 cut(s)	22, 71, 188, 208, 328, 400, 482, 511, 533
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	2 cut(s)	27, 468
DpnII	GATC	2 cut(s)	25, 466
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	577
EcoT22I	ATGCAT	2 cut(s)	457, 556
ErhI	CCWWGG	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	22, 188
HapII	CCGG	2 cut(s)	189, 329
HinfI	GANTC	1 cut(s)	573
HpaII	CCGG	2 cut(s)	189, 329
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	33, 89
Hpy188III	TCNNGA	2 cut(s)	386, 440
Hpy8I	GTNNAC	2 cut(s)	33, 89
HpyAV	CCTTC	2 cut(s)	186, 383
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	455, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 466
MaeI	CTAG	1 cut(s)	380
MalI	GATC	2 cut(s)	27, 468
MboI	GATC	2 cut(s)	25, 466
MboII	GAAGA	1 cut(s)	314
MluCI	AATT	4 cut(s)	93, 118, 178, 462
MnlI	CCTC	3 cut(s)	112, 436, 447
Mph1103I	ATGCAT	2 cut(s)	457, 556
MseI	TTAA	5 cut(s)	78, 107, 122, 333, 461
MslI	CAYNNNNRTG	2 cut(s)	248, 273
MspA1I	CMGCKG	1 cut(s)	537
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	2 cut(s)	189, 329
Mva1269I	GAATGC	1 cut(s)	556
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	577
NdeII	GATC	2 cut(s)	25, 466
NlaIV	GGNNCC	1 cut(s)	187
NsiI	ATGCAT	2 cut(s)	457, 556
NspI	RCATGY	2 cut(s)	163, 459
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	22
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	573
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	186
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	2 cut(s)	248, 273
SaqAI	TTAA	5 cut(s)	78, 107, 122, 333, 461
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	25, 466
Sau96I	GGNCC	1 cut(s)	186
SetI	ASST	8 cut(s)	38, 73, 201, 210, 322, 344, 484, 513
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	248, 273
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	4 cut(s)	93, 118, 178, 462
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	174, 537
SspMI	CTAG	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	156, 478, 513
TasI	AATT	4 cut(s)	93, 118, 178, 462
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	573
Tru1I	TTAA	5 cut(s)	78, 107, 122, 333, 461
Tru9I	TTAA	5 cut(s)	78, 107, 122, 333, 461
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	86, 518
TspRI	CASTG	1 cut(s)	235
Tth111I	GACNNNGTC	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	2 cut(s)	163, 459
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	2 cut(s)	457, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.