Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

11477576 .. 11479925

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG058000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGCCCTCTCTCTCCTCCCCATCTCTGACTCTGCCGCCCAAACCTAACAAACGCCTCCTCCCCAACAAGCACAACAAGCCTTCCTGCCTCGTCCAATCCATCCTCAACCTCTGCTCCCAAGGCCAGCTCTCCCAAGCCGTCTCGTCCCTCGACATCTTATTCCGAAAAGGGATTCGCTTGCCCACCAAGTCTCTCGCTTTTCTACTGCAGCATTGCGGAGACGCTCGGTCCCTCAGAGAAGGCAAATGGGTTCACTTGTATTTGAGGCTCACCGGATTCAAACGCCCGCCTTTGCTTTTGGCTAACCATTTGATTGGGATGTACTTCAAATGCGGCGATGAGGTTGATGCACGCATGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAATATGTTATCTGGGCATGTGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGATAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTATGCCCAGAGTGGGGATTGTAATGAGGCTTTGAGGTTTTATAGAGAGTTGCGGAGGTCGCCGGTTGGGTTGAATGAGTTTAGTTTTGCAGGTGTTTTGACTGTGTGTGTGAAGATGAGGGAATGGAAGCTTATTAGGCAGGCTCATGGGCAGATTTTGGTTGCTGGGTTTTTGTCGAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAAGTGTGGAGAGATGGTAGATGCTAGGAGATTGTTCGATGAGATGGCTGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGCGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAGTCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCATCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAATACGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAGTTTGGGGGCCGGAAGGCAGGTTTTCAAGCTCATGGGTGATAAGCAAGACATCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTACGACCACCTTTGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGCTTTTCAAGGCAATGACTGATGATTATGGCATTGTTCCTAATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGTTAATGAACCAACTCAAAAATATGCCACGTAAAGCTGGCGGTCAAGTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTAGAACCTCAATCTTCTGCTCCCTATGTTTTACTTTCGAGCATATATGCTGAAGAAGGTAGATGGGAGCTGGTAGAGAAGGTGAGATGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGAGCCATTAGTTGGGTAGAAGTTGAAAGTAGAGTGCATGCTTTCACTGTATCAGACCGGCTGCATCCTCTGAAAGAGGAAATATACTCAGCTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAATGCCGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

615

Amino Acids

69.23

Weight (kDa)

8.76

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	130 - 159	1.3e-06	PPR repeat
PPR_2	PF13041	158 - 207	9.3e-07	PPR repeat family
PPR	PF01535	161 - 189	4.2e-06	PPR repeat
PPR	PF01535	263 - 291	9.5e-07	PPR repeat
PPR_2	PF13041	291 - 338	1.1e-10	PPR repeat family
PPR	PF01535	293 - 319	3.2e-08	PPR repeat
PPR_2	PF13041	393 - 440	4.9e-11	PPR repeat family
PPR	PF01535	395 - 425	8.5e-08	PPR repeat
E_motif	PF20431	510 - 572	2.1e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
Acc36I	ACCTGC	2 cut(s)	587, 1138
AccB7I	CCANNNNNTGG	1 cut(s)	1707
AciI	CCGC	7 cut(s)	35, 216, 287, 333, 559, 1125, 1488
AcoI	YGGCCR	1 cut(s)	1557
AcsI	RAATTY	2 cut(s)	382, 1044
AcuI	CTGAAG	3 cut(s)	455, 1647, 1809
AfaI	GTAC	2 cut(s)	323, 389
AfeI	AGCGCT	1 cut(s)	933
AfiI	CCNNNNNNNGG	3 cut(s)	519, 520, 1707
AflII	CTTAAG	1 cut(s)	1028
AflIII	ACRYGT	2 cut(s)	1110, 1681
AgsI	TTSAA	9 cut(s)	280, 328, 580, 965, 1156, 1253, 1357, 1721, 1792
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	485
AleI	CACNNNNGTG	1 cut(s)	497
Alw26I	GTCTC	4 cut(s)	145, 195, 213, 1672
Aor51HI	AGCGCT	1 cut(s)	933
AoxI	GGCC	5 cut(s)	121, 441, 971, 1137, 1557
ApeKI	GCWGC	2 cut(s)	208, 1756
ApoI	RAATTY	2 cut(s)	382, 1044
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	4 cut(s)	228, 442, 792, 1137
AsuC2I	CCSGG	2 cut(s)	445, 875
AsuHPI	GGTGA	5 cut(s)	262, 511, 836, 1178, 1669
AsuNHI	GCTAGC	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	228, 792
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	1260
BbvI	GCAGC	2 cut(s)	220, 1743
BccI	CCATC	7 cut(s)	28, 107, 730, 760, 1632, 1656, 1804
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciT130I	CCWGG	1 cut(s)	487
BclI	TGATCA	1 cut(s)	976
BcnI	CCSGG	2 cut(s)	445, 875
BcoDI	GTCTC	4 cut(s)	145, 195, 213, 1672
BfaI	CTAG	6 cut(s)	747, 840, 909, 1014, 1331, 1846
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	935
BfrI	CTTAAG	1 cut(s)	1028
BfuAI	ACCTGC	2 cut(s)	587, 1138
BisI	GCNGC	5 cut(s)	35, 209, 334, 1126, 1757
BlsI	GCNGC	5 cut(s)	36, 210, 335, 1127, 1758
Bme1390I	CCNGG	3 cut(s)	445, 487, 875
Bme18I	GGWCC	2 cut(s)	228, 792
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	4 cut(s)	228, 442, 792, 1137
BmiI	GGNNCC	2 cut(s)	230, 1138
BmrFI	CCNGG	3 cut(s)	445, 487, 875
BmsI	GCATC	8 cut(s)	337, 703, 733, 849, 945, 1031, 1768, 1810
BmtI	GCTAGC	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	1260
Bpu10I	CCTNAGC	1 cut(s)	1210
BpuMI	CCSGG	2 cut(s)	445, 875
BsaAI	YACGTR	1 cut(s)	1478
BsaJI	CCNNGG	3 cut(s)	118, 495, 1528
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 98, 128, 723, 753
Bsc4I	CCNNNNNNNGG	3 cut(s)	519, 520, 1707
Bse118I	RCCGGY	3 cut(s)	568, 1279, 1752
Bse1I	ACTGG	1 cut(s)	804
Bse3DI	GCAATG	3 cut(s)	211, 1238, 1368
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	118, 495, 1528
BseGI	GGATG	9 cut(s)	99, 324, 481, 718, 784, 864, 1442, 1678, 1759
BseLI	CCNNNNNNNGG	3 cut(s)	519, 520, 1707
BseMI	GCAATG	3 cut(s)	211, 1238, 1368
BseMII	CTCAG	4 cut(s)	247, 459, 855, 1797
BseNI	ACTGG	1 cut(s)	804
BseRI	GAGGAG	2 cut(s)	4, 47
BseXI	GCAGC	2 cut(s)	220, 1743
BseYI	CCCAGC	2 cut(s)	671, 1543
BsgI	GTGCAG	1 cut(s)	1355
BshFI	GGCC	5 cut(s)	123, 443, 973, 1139, 1559
BsiSI	CCGG	7 cut(s)	273, 445, 569, 875, 1140, 1280, 1753
BslFI	GGGAC	2 cut(s)	130, 214
BslI	CCNNNNNNNGG	3 cut(s)	519, 520, 1707
BsmAI	GTCTC	4 cut(s)	145, 195, 213, 1672
BsmBI	CGTCTC	2 cut(s)	145, 213
BsmFI	GGGAC	2 cut(s)	130, 214
BsmI	GAATGC	1 cut(s)	1507
BsnI	GGCC	5 cut(s)	123, 443, 973, 1139, 1559
Bsp143I	GATC	3 cut(s)	853, 976, 1417
Bsp19I	CCATGG	2 cut(s)	495, 1528
BspACI	CCGC	7 cut(s)	35, 216, 287, 333, 559, 1125, 1488
BspANI	GGCC	5 cut(s)	123, 443, 973, 1139, 1559
BspCNI	CTCAG	4 cut(s)	246, 460, 856, 1796
BspLI	GGNNCC	2 cut(s)	230, 1138
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	2 cut(s)	587, 1138
BspOI	GCTAGC	1 cut(s)	843
BspTI	CTTAAG	1 cut(s)	1028
BsrDI	GCAATG	3 cut(s)	211, 1238, 1368
BsrFI	RCCGGY	3 cut(s)	568, 1279, 1752
BsrI	ACTGG	1 cut(s)	804
BssAI	RCCGGY	3 cut(s)	568, 1279, 1752
BssECI	CCNNGG	3 cut(s)	118, 495, 1528
BssMI	GATC	3 cut(s)	853, 976, 1417
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	118, 495, 1528
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	3 cut(s)	610, 1744, 1797
BstAFI	CTTAAG	1 cut(s)	1028
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstBAI	YACGTR	1 cut(s)	1478
BstDEI	CTNAG	5 cut(s)	233, 468, 864, 1210, 1783
BstDSI	CCRYGG	2 cut(s)	495, 1528
BstF5I	GGATG	9 cut(s)	99, 324, 481, 718, 784, 864, 1442, 1678, 1759
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	3 cut(s)	856, 979, 1420
BstMAI	GTCTC	4 cut(s)	145, 195, 213, 1672
BstMBI	GATC	3 cut(s)	853, 976, 1417
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 120, 565, 643, 931, 944, 1019, 1342
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	5 cut(s)	419, 1114, 1410, 1685, 1736
BstSCI	CCNGG	3 cut(s)	443, 485, 873
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	220, 1743
BstV2I	GAAGAC	1 cut(s)	1260
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	5 cut(s)	123, 443, 973, 1139, 1559
BtgI	CCRYGG	2 cut(s)	495, 1528
BtgZI	GCGATG	2 cut(s)	351, 1008
BtsCI	GGATG	9 cut(s)	99, 324, 481, 718, 784, 864, 1442, 1678, 1759
BtsIMutI	CAGTG	2 cut(s)	797, 1740
BveI	ACCTGC	2 cut(s)	587, 1138
CfoI	GCGC	1 cut(s)	934
Cfr10I	RCCGGY	3 cut(s)	568, 1279, 1752
Cfr13I	GGNCC	4 cut(s)	228, 442, 792, 1137
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	322, 388
CspCI	CAANNNNNGTGG	2 cut(s)	1279, 1314
CviQI	GTAC	2 cut(s)	322, 388
DdeI	CTNAG	5 cut(s)	233, 468, 864, 1210, 1783
DpnI	GATC	3 cut(s)	855, 978, 1419
DpnII	GATC	3 cut(s)	853, 976, 1417
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	1557
Eam1105I	GACNNNNNGTC	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	118, 495, 1528
Eco147I	AGGCCT	1 cut(s)	973
Eco47I	GGWCC	2 cut(s)	228, 792
Eco47III	AGCGCT	1 cut(s)	933
Eco57I	CTGAAG	3 cut(s)	455, 1647, 1809
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	3 cut(s)	118, 495, 1528
EcoT22I	ATGCAT	2 cut(s)	1408, 1507
ErhI	CCWWGG	3 cut(s)	118, 495, 1528
Esp3I	CGTCTC	2 cut(s)	145, 213
FaqI	GGGAC	2 cut(s)	130, 214
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	976
Fnu4HI	GCNGC	5 cut(s)	35, 209, 334, 1126, 1757
FokI	GGATG	9 cut(s)	86, 331, 488, 725, 791, 871, 1449, 1685, 1746
Fsp4HI	GCNGC	5 cut(s)	35, 209, 334, 1126, 1757
FspBI	CTAG	6 cut(s)	747, 840, 909, 1014, 1331, 1846
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	5 cut(s)	35, 209, 334, 1126, 1757
GsaI	CCCAGC	2 cut(s)	675, 1547
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	5 cut(s)	123, 443, 973, 1139, 1559
HapII	CCGG	7 cut(s)	273, 445, 569, 875, 1140, 1280, 1753
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	934
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	5 cut(s)	28, 172, 276, 430, 1524
HpaII	CCGG	7 cut(s)	273, 445, 569, 875, 1140, 1280, 1753
HphI	GGTGA	5 cut(s)	262, 511, 836, 1178, 1669
Hpy166II	GTNNAC	3 cut(s)	253, 984, 1040
Hpy188I	TCNGA	7 cut(s)	27, 164, 236, 435, 858, 1750, 1767
Hpy188III	TCNNGA	1 cut(s)	807
Hpy8I	GTNNAC	3 cut(s)	253, 984, 1040
HpyAV	CCTTC	7 cut(s)	90, 233, 430, 1137, 1334, 1625, 1648
HpyCH4III	ACNGT	3 cut(s)	610, 1744, 1797
HpyCH4IV	ACGT	1 cut(s)	1477
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 120, 565, 643, 931, 944, 1019, 1342
HpyF3I	CTNAG	5 cut(s)	233, 468, 864, 1210, 1783
HpySE526I	ACGT	1 cut(s)	1477
HspAI	GCGC	1 cut(s)	932
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	3 cut(s)	853, 976, 1417
LmnI	GCTCC	4 cut(s)	119, 447, 1600, 1642
Lsp1109I	GCAGC	2 cut(s)	220, 1743
LweI	GCATC	8 cut(s)	337, 703, 733, 849, 945, 1031, 1768, 1810
MaeI	CTAG	6 cut(s)	747, 840, 909, 1014, 1331, 1846
MaeII	ACGT	1 cut(s)	1477
MaeIII	GTNAC	2 cut(s)	1282, 1828
MalI	GATC	3 cut(s)	855, 978, 1419
MboI	GATC	3 cut(s)	853, 976, 1417
MboII	GAAGA	9 cut(s)	433, 631, 880, 1265, 1560, 1581, 1640, 1826, 1829
MluCI	AATT	4 cut(s)	382, 1044, 1069, 1413
MlyI	GAGTC	1 cut(s)	22
Mph1103I	ATGCAT	2 cut(s)	1408, 1507
MseI	TTAA	5 cut(s)	1029, 1058, 1073, 1412, 1451
MslI	CAYNNNNRTG	3 cut(s)	497, 1199, 1224
MspCI	CTTAAG	1 cut(s)	1028
MspI	CCGG	7 cut(s)	273, 445, 569, 875, 1140, 1280, 1753
MspR9I	CCNGG	3 cut(s)	445, 487, 875
Mva1269I	GAATGC	1 cut(s)	1507
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	8 cut(s)	76, 120, 565, 643, 931, 944, 1019, 1342
NciI	CCSGG	2 cut(s)	445, 875
NcoI	CCATGG	2 cut(s)	495, 1528
NdeII	GATC	3 cut(s)	853, 976, 1417
NheI	GCTAGC	1 cut(s)	839
NlaIV	GGNNCC	2 cut(s)	230, 1138
NsiI	ATGCAT	2 cut(s)	1408, 1507
NspI	RCATGY	5 cut(s)	419, 1114, 1410, 1685, 1736
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	2 cut(s)	1410, 1736
PaqCI	CACCTGC	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	973
PciI	ACATGT	2 cut(s)	1110, 1681
PctI	GAATGC	1 cut(s)	1507
PfeI	GAWTC	4 cut(s)	172, 276, 430, 1524
PflFI	GACNNNGTC	1 cut(s)	1259
PflMI	CCANNNNNTGG	1 cut(s)	1707
PfoI	TCCNGGA	1 cut(s)	485
PkrI	GCNGC	5 cut(s)	36, 210, 335, 1127, 1758
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	1478
PscI	ACATGT	2 cut(s)	1110, 1681
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	2 cut(s)	671, 1543
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	230, 1138
PspPI	GGNCC	4 cut(s)	228, 442, 792, 1137
PstI	CTGCAG	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	1259
RsaI	GTAC	2 cut(s)	323, 389
RsaNI	GTAC	2 cut(s)	322, 388
RseI	CAYNNNNRTG	3 cut(s)	497, 1199, 1224
SaqAI	TTAA	5 cut(s)	1029, 1058, 1073, 1412, 1451
SatI	GCNGC	5 cut(s)	35, 209, 334, 1126, 1757
Sau3AI	GATC	3 cut(s)	853, 976, 1417
Sau96I	GGNCC	4 cut(s)	228, 442, 792, 1137
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	445, 487, 875
SfaNI	GCATC	8 cut(s)	337, 703, 733, 849, 945, 1031, 1768, 1810
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	228, 792
SmiMI	CAYNNNNRTG	3 cut(s)	497, 1199, 1224
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
SphI	GCATGC	2 cut(s)	1410, 1736
Sse9I	AATT	4 cut(s)	382, 1044, 1069, 1413
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	7 cut(s)	35, 216, 287, 333, 559, 1125, 1488
SspMI	CTAG	6 cut(s)	747, 840, 909, 1014, 1331, 1846
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	3 cut(s)	443, 485, 873
StyI	CCWWGG	3 cut(s)	118, 495, 1528
TaaI	ACNGT	3 cut(s)	610, 1744, 1797
TaiI	ACGT	1 cut(s)	1480
TaqI	TCGA	7 cut(s)	150, 683, 698, 759, 1107, 1429, 1613
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	4 cut(s)	382, 1044, 1069, 1413
TatI	WGTACW	2 cut(s)	321, 387
TauI	GCSGC	3 cut(s)	37, 336, 1128
TfiI	GAWTC	4 cut(s)	172, 276, 430, 1524
Tru1I	TTAA	5 cut(s)	1029, 1058, 1073, 1412, 1451
Tru9I	TTAA	5 cut(s)	1029, 1058, 1073, 1412, 1451
TscAI	CASTG	2 cut(s)	804, 1747
TseI	GCWGC	2 cut(s)	208, 1756
TspDTI	ATGAA	4 cut(s)	845, 942, 1037, 1469
TspRI	CASTG	2 cut(s)	804, 1747
Tth111I	GACNNNGTC	1 cut(s)	1259
Van91I	CCANNNNNTGG	1 cut(s)	1707
Vha464I	CTTAAG	1 cut(s)	1028
VpaK11BI	GGWCC	2 cut(s)	228, 792
XapI	RAATTY	2 cut(s)	382, 1044
XceI	RCATGY	5 cut(s)	419, 1114, 1410, 1685, 1736
XspI	CTAG	6 cut(s)	747, 840, 909, 1014, 1331, 1846
Zsp2I	ATGCAT	2 cut(s)	1408, 1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.