Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

19769781 .. 19771619

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1120900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGCCCTCTTTCTCTTCCCCACCTCTCCCTCCTCTCACCAAGCCTAACAAACGCCTCGCCGGTACCAAGCGTCCCTGCGTCGTCCAGTCTCTTCTTAAGCTCTGCTCGCAGGGCCACCTCTCGCAAGCCCTCTCCTCCCTCGACCTTTTAGTCCAAAGGGGTATCCGTTTACCCGCCAAGACTCTCGCTTTCCTCCTGCAACAGTGCGGCGCCGCCAGGTCCCTCCGAGAAGGCAAATGGGTTCACATCCATTTGAAGCTCACTGGATTCAAGCACCCCTCTACGTTTTTAGCAAACCATTTGATAAATATGTACTTTAAATGTGCCGATGATGTAGAAGCCCGCAGGGTGTTTGATAAAATGTCTGTGAGGAATTTGTACTCTTGGAACAATATGCTTTCTGGGTATGCTAAGATGAGGAAGTTGAGTGAGGCCAGGAGTTTGTTTGAAAAAATGCCGGAAAAGGACGTCGTGTCGTGGAACACCATGGTCATTGGTTGTGCTCAGAGTGGAGTTTGTGATGAGGCTTTGAGGTTTTATAGAGAATTAAGGAGATTGTCAATTGGTTTCAATGAGTTTAGTTTTGCGGGTGTTTTGACTGCTTGTGTGAAGTTGAAGGAATTGGGGCTTACTAGACAAGTTCATGGGCAGGTTTTGGTTGCTGGGTTTTTGTCAAATGTTGTGCTTTCTAGTTCGGTTGTTGATGCTTATGCCAAGTGTGGGGAGATGGGAGATGCGAGGAAAGTGTTCGATAGCATGCCTGTGAAGGATGTTCTTGTTTGGACAACATTGGTTTCGGGGTATGCGAAATTTGGTGATATGGAATCAGCTAGTGAATTTTTCAATCGGATGCCCGAGAAGAACCCTATATCGTGGACAGCTGTGATTTCCGGCTATGCTAGAAATGGTTTGGGGCATGAAGCCCTTGCATTGTTTACAGAGATGATGATGTATCAAGTTAGACCTGATCAGTTTACATTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCACTTAAGCATGGTAAACAAGTACATGCGTCTTTAATACGAAGTAATTTTAGACCCAACACAATTGTTGTGAGCTCTCTTATCGACATGTATTCAAAATGTGGGGATTTGGGGGCAGGAAGACGAGTTTTCAAGCTCATGGGTGATAAGCAAGATACTGTATTATGGAACACATTGATATCTGCCTTAGCGCAGTATGGTAATGGTATAGAGGCAATGGGGATGTTTGAGGAGATGGTCAGATCAGGAGTGAAGCCAGATAGGACCACCTTTGTGGTCATTCTCAATGCATGTAGTCATTCTGGTCTAGTGCAGGAAGGGCTTAGTTTTTTCCAGGCCATGACTAGTGATCATGGTATTGTTCCTGATCAAGAACATTATGCATGCTTAGTTGATCTCTTGGGTCGAGCTGGACATTTTGACGAGTTAATCAACCAGCTCAAGAATATGCCATGTAAAGCTGGCGATCAAGTTTGGAATGCATTACTCGGTGTTAGTAGAATTCATGGAAACACAGAGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCCTCAATCTTCTGGTGCCTATGTACTACTTTCAAGTATATATGCCAAACATGGGAAATGGGAGTTGGTGGAGAAGGTGAGACAGCTTATGGATGAGAGACAAGTGAGGAAAGAGCGGGCCCTTAGCTGGATAGAAGTTGAAAATAGAGTGAATGCGTTCACTGTATCGGATCGGTTGCATCCTCTGAAAGAAGAAATATACTCAGTTTTGGAACAATTAGCTGGCCAGATGGAAGAAGATGTTTCGGTACCTAATTCTGTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

613

Amino Acids

68.31

Weight (kDa)

8.82

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	127 - 156	1.1e-07	PPR repeat
PPR_2	PF13041	155 - 204	7.1e-06	PPR repeat family
PPR	PF01535	260 - 288	1.7e-06	PPR repeat
PPR_2	PF13041	288 - 335	3.1e-10	PPR repeat family
PPR	PF01535	290 - 316	7.6e-07	PPR repeat
PPR_3	PF13812	389 - 436	4.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	390 - 437	2.3e-12	PPR repeat family
PPR	PF01535	392 - 422	8.1e-08	PPR repeat
E_motif	PF20431	507 - 569	2.3e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	471
Acc36I	ACCTGC	1 cut(s)	640
Acc65I	GGTACC	2 cut(s)	62, 1819
AccB1I	GGYRCC	4 cut(s)	62, 209, 1586, 1819
AccBSI	CCGCTC	1 cut(s)	1687
AciI	CCGC	6 cut(s)	174, 207, 213, 343, 587, 1687
AclWI	GGATC	1 cut(s)	1749
AcoI	YGGCCR	2 cut(s)	1548, 1795
AcsI	RAATTY	4 cut(s)	373, 809, 836, 1515
AcyI	GRCGYC	2 cut(s)	210, 468
AfaI	GTAC	6 cut(s)	64, 314, 380, 1038, 1596, 1821
AfiI	CCNNNNNNNGG	3 cut(s)	720, 1623, 1698
AflII	CTTAAG	2 cut(s)	95, 1019
AflIII	ACRYGT	1 cut(s)	1101
AhdI	GACNNNNNGTC	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	1358
AjnI	CCWGG	3 cut(s)	215, 434, 1347
AjuI	GAANNNNNNNTTGG	2 cut(s)	1619, 1651
AleI	CACNNNNGTG	1 cut(s)	1286
Alw21I	GWGCWC	2 cut(s)	505, 1091
Alw26I	GTCTC	3 cut(s)	93, 1645, 1663
AlwI	GGATC	1 cut(s)	1749
Ama87I	CYCGRG	1 cut(s)	854
AoxI	GGCC	6 cut(s)	112, 432, 1350, 1548, 1689, 1795
ApaI	GGGCCC	1 cut(s)	1693
ApoI	RAATTY	4 cut(s)	373, 809, 836, 1515
Asp700I	GAANNNNTTC	2 cut(s)	746, 1727
Asp718I	GGTACC	2 cut(s)	62, 1819
AspLEI	GCGC	2 cut(s)	212, 1207
AspS9I	GGNCC	5 cut(s)	112, 219, 1278, 1689, 1690
AsuHPI	GGTGA	4 cut(s)	28, 827, 1169, 1660
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	2 cut(s)	219, 1278
BaeGI	GKGCMC	1 cut(s)	1693
BalI	TGGCCA	1 cut(s)	1797
BanI	GGYRCC	4 cut(s)	62, 209, 1586, 1819
BanII	GRGCYC	2 cut(s)	1091, 1693
BbsI	GAAGAC	1 cut(s)	1141
Bbv12I	GWGCWC	2 cut(s)	505, 1091
BccI	CCATC	3 cut(s)	721, 1243, 1795
BciT130I	CCWGG	3 cut(s)	217, 436, 1349
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	3 cut(s)	967, 1363, 1381
BcoDI	GTCTC	3 cut(s)	93, 1645, 1663
BcuI	ACTAGT	1 cut(s)	1358
BfaI	CTAG	7 cut(s)	633, 690, 831, 900, 1005, 1322, 1359
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	2 cut(s)	95, 1019
BfuAI	ACCTGC	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	2 cut(s)	208, 213
BlsI	GCNGC	2 cut(s)	209, 214
Bme1390I	CCNGG	3 cut(s)	217, 436, 1349
Bme18I	GGWCC	2 cut(s)	219, 1278
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	854
BmgT120I	GGNCC	5 cut(s)	112, 219, 1278, 1689, 1690
BmiI	GGNNCC	7 cut(s)	64, 211, 221, 1572, 1588, 1691, 1821
BmrFI	CCNGG	3 cut(s)	217, 436, 1349
BmsI	GCATC	4 cut(s)	694, 724, 840, 1759
BpiI	GAAGAC	1 cut(s)	1141
Bpu10I	CCTNAGC	2 cut(s)	1201, 1694
BpuEI	CTTGAG	1 cut(s)	1439
BsaHI	GRCGYC	2 cut(s)	210, 468
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	3 cut(s)	720, 1623, 1698
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	85, 268
Bse3DI	GCAATG	1 cut(s)	1236
BseBI	CCWGG	3 cut(s)	217, 436, 1349
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	6 cut(s)	246, 775, 855, 1242, 1669, 1750
BseLI	CCNNNNNNNGG	3 cut(s)	720, 1623, 1698
BseMI	GCAATG	1 cut(s)	1236
BseMII	CTCAG	2 cut(s)	518, 1788
BseNI	ACTGG	2 cut(s)	85, 268
BseRI	GAGGAG	3 cut(s)	21, 124, 1259
BseSI	GKGCMC	1 cut(s)	1693
BseYI	CCCAGC	2 cut(s)	662, 1534
BsgI	GTGCAG	1 cut(s)	1346
BshFI	GGCC	6 cut(s)	114, 434, 1352, 1550, 1691, 1797
BshNI	GGYRCC	4 cut(s)	62, 209, 1586, 1819
BsiHKAI	GWGCWC	2 cut(s)	505, 1091
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	3 cut(s)	60, 458, 891
BslFI	GGGAC	2 cut(s)	57, 205
BslI	CCNNNNNNNGG	3 cut(s)	720, 1623, 1698
BsmAI	GTCTC	3 cut(s)	93, 1645, 1663
BsmFI	GGGAC	2 cut(s)	57, 205
BsmI	GAATGC	2 cut(s)	1498, 1729
BsnI	GGCC	6 cut(s)	114, 434, 1352, 1550, 1691, 1797
BsoBI	CYCGRG	1 cut(s)	854
Bsp120I	GGGCCC	1 cut(s)	1689
Bsp1286I	GDGCHC	3 cut(s)	505, 1091, 1693
Bsp143I	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	6 cut(s)	174, 207, 213, 343, 587, 1687
BspANI	GGCC	6 cut(s)	114, 434, 1352, 1550, 1691, 1797
BspCNI	CTCAG	2 cut(s)	517, 1787
BspLI	GGNNCC	7 cut(s)	64, 211, 221, 1572, 1588, 1691, 1821
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	1749
BspT107I	GGYRCC	4 cut(s)	62, 209, 1586, 1819
BspTI	CTTAAG	2 cut(s)	95, 1019
BsrBI	CCGCTC	1 cut(s)	1687
BsrDI	GCAATG	1 cut(s)	1236
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	85, 268
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
BssNI	GRCGYC	2 cut(s)	210, 468
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	3 cut(s)	217, 436, 1349
Bst4CI	ACNGT	3 cut(s)	204, 1174, 1735
Bst6I	CTCTTC	2 cut(s)	19, 96
BstACI	GRCGYC	2 cut(s)	210, 468
BstAFI	CTTAAG	2 cut(s)	95, 1019
BstC8I	GCNNGC	8 cut(s)	107, 126, 343, 758, 1399, 1477, 1689, 1795
BstDEI	CTNAG	7 cut(s)	411, 504, 1201, 1337, 1402, 1694, 1774
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	6 cut(s)	246, 775, 855, 1242, 1669, 1750
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 1207
BstKTI	GATC	7 cut(s)	970, 1259, 1366, 1384, 1411, 1483, 1744
BstMAI	GTCTC	3 cut(s)	93, 1645, 1663
BstMBI	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 111, 1010, 1333
BstNI	CCWGG	3 cut(s)	217, 436, 1349
BstNSI	RCATGY	5 cut(s)	760, 1043, 1105, 1308, 1401
BstSCI	CCNGG	3 cut(s)	215, 434, 1347
BstSLI	GKGCMC	1 cut(s)	1693
BstV2I	GAAGAC	1 cut(s)	1141
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	6 cut(s)	114, 434, 1352, 1550, 1691, 1797
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	6 cut(s)	246, 775, 855, 1242, 1669, 1750
BtsIMutI	CAGTG	3 cut(s)	209, 261, 1731
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	8 cut(s)	107, 126, 343, 758, 1399, 1477, 1689, 1795
CfoI	GCGC	2 cut(s)	212, 1207
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	5 cut(s)	112, 219, 1278, 1689, 1690
CseI	GACGC	3 cut(s)	59, 67, 1032
Csp6I	GTAC	6 cut(s)	63, 313, 379, 1037, 1595, 1820
CviQI	GTAC	6 cut(s)	63, 313, 379, 1037, 1595, 1820
DdeI	CTNAG	7 cut(s)	411, 504, 1201, 1337, 1402, 1694, 1774
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	7 cut(s)	969, 1258, 1365, 1383, 1410, 1482, 1743
DpnII	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
DraI	TTTAAA	1 cut(s)	319
DrdI	GACNNNNNNGTC	1 cut(s)	149
DriI	GACNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	2 cut(s)	1548, 1795
Eam1104I	CTCTTC	2 cut(s)	19, 96
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	2 cut(s)	19, 96
Ecl136II	GAGCTC	1 cut(s)	1089
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	1091, 1693
Eco32I	GATATC	1 cut(s)	1194
Eco47I	GGWCC	2 cut(s)	219, 1278
Eco53kI	GAGCTC	1 cut(s)	1089
Eco88I	CYCGRG	1 cut(s)	854
EcoICRI	GAGCTC	1 cut(s)	1089
EcoO109I	RGGNCCY	2 cut(s)	219, 1690
EcoRI	GAATTC	1 cut(s)	1515
EcoRII	CCWGG	3 cut(s)	215, 434, 1347
EcoRV	GATATC	1 cut(s)	1194
EcoT14I	CCWWGG	1 cut(s)	486
EcoT22I	ATGCAT	3 cut(s)	1306, 1399, 1498
EcoT38I	GRGCYC	2 cut(s)	1091, 1693
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	486
FaqI	GGGAC	2 cut(s)	57, 205
FauI	CCCGC	4 cut(s)	181, 350, 580, 1680
FbaI	TGATCA	3 cut(s)	967, 1363, 1381
Fnu4HI	GCNGC	2 cut(s)	208, 213
FokI	GGATG	6 cut(s)	233, 782, 862, 1249, 1676, 1737
FriOI	GRGCYC	2 cut(s)	1091, 1693
Fsp4HI	GCNGC	2 cut(s)	208, 213
FspBI	CTAG	7 cut(s)	633, 690, 831, 900, 1005, 1322, 1359
GlaI	GCGC	2 cut(s)	211, 1206
GluI	GCNGC	2 cut(s)	208, 213
GsaI	CCCAGC	2 cut(s)	666, 1538
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	6 cut(s)	114, 434, 1352, 1550, 1691, 1797
HapII	CCGG	3 cut(s)	60, 458, 891
HgaI	GACGC	3 cut(s)	59, 67, 1032
HhaI	GCGC	2 cut(s)	212, 1207
Hin1I	GRCGYC	2 cut(s)	210, 468
Hin6I	GCGC	2 cut(s)	210, 1205
HinP1I	GCGC	2 cut(s)	210, 1205
HinfI	GANTC	3 cut(s)	181, 267, 824
HpaII	CCGG	3 cut(s)	60, 458, 891
HphI	GGTGA	4 cut(s)	28, 827, 1169, 1660
Hpy166II	GTNNAC	7 cut(s)	170, 244, 876, 936, 975, 1031, 1731
Hpy188I	TCNGA	6 cut(s)	227, 507, 849, 1256, 1741, 1758
Hpy188III	TCNNGA	4 cut(s)	1260, 1379, 1385, 1456
Hpy8I	GTNNAC	7 cut(s)	170, 244, 876, 936, 975, 1031, 1731
Hpy99I	CGWCG	2 cut(s)	83, 473
HpyAV	CCTTC	5 cut(s)	224, 610, 760, 1325, 1639
HpyCH4III	ACNGT	3 cut(s)	204, 1174, 1735
HpyCH4IV	ACGT	2 cut(s)	284, 468
HpyCH4V	TGCA	7 cut(s)	199, 929, 1304, 1327, 1397, 1496, 1750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 111, 1010, 1333
HpyF3I	CTNAG	7 cut(s)	411, 504, 1201, 1337, 1402, 1694, 1774
HpySE526I	ACGT	2 cut(s)	284, 468
Hsp92I	GRCGYC	2 cut(s)	210, 468
HspAI	GCGC	2 cut(s)	210, 1205
KasI	GGCGCC	1 cut(s)	209
KpnI	GGTACC	2 cut(s)	66, 1823
Ksp22I	TGATCA	3 cut(s)	967, 1363, 1381
Kzo9I	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
LmnI	GCTCC	1 cut(s)	1570
LweI	GCATC	4 cut(s)	694, 724, 840, 1759
MaeI	CTAG	7 cut(s)	633, 690, 831, 900, 1005, 1322, 1359
MaeII	ACGT	2 cut(s)	284, 468
MalI	GATC	7 cut(s)	969, 1258, 1365, 1383, 1410, 1482, 1743
MbiI	CCGCTC	1 cut(s)	1687
MboI	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
MboII	GAAGA	9 cut(s)	6, 83, 871, 1146, 1551, 1572, 1775, 1817, 1820
MfeI	CAATTG	2 cut(s)	561, 1077
MhlI	GDGCHC	3 cut(s)	505, 1091, 1693
MlsI	TGGCCA	1 cut(s)	1797
MluNI	TGGCCA	1 cut(s)	1797
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	1548
Mox20I	TGGCCA	1 cut(s)	1797
Mph1103I	ATGCAT	3 cut(s)	1306, 1399, 1498
MroXI	GAANNNNTTC	2 cut(s)	746, 1727
MscI	TGGCCA	1 cut(s)	1797
MseI	TTAA	6 cut(s)	96, 318, 548, 1020, 1049, 1442
MslI	CAYNNNNRTG	2 cut(s)	761, 1286
Msp20I	TGGCCA	1 cut(s)	1797
MspA1I	CMGCKG	1 cut(s)	881
MspCI	CTTAAG	2 cut(s)	95, 1019
MspI	CCGG	3 cut(s)	60, 458, 891
MspR9I	CCNGG	3 cut(s)	217, 436, 1349
MunI	CAATTG	2 cut(s)	561, 1077
Mva1269I	GAATGC	2 cut(s)	1498, 1729
MvaI	CCWGG	3 cut(s)	217, 436, 1349
MwoI	GCNNNNNNNGC	4 cut(s)	106, 111, 1010, 1333
NarI	GGCGCC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
NlaIV	GGNNCC	7 cut(s)	64, 211, 221, 1572, 1588, 1691, 1821
NsiI	ATGCAT	3 cut(s)	1306, 1399, 1498
NspI	RCATGY	5 cut(s)	760, 1043, 1105, 1308, 1401
OliI	CACNNNNGTG	1 cut(s)	1286
PaeI	GCATGC	2 cut(s)	760, 1401
PciI	ACATGT	1 cut(s)	1101
PcsI	WCGNNNNNNNCGW	1 cut(s)	803
PctI	GAATGC	2 cut(s)	1498, 1729
PdmI	GAANNNNTTC	2 cut(s)	746, 1727
PfeI	GAWTC	2 cut(s)	267, 824
PkrI	GCNGC	2 cut(s)	209, 214
PleI	GAGTC	1 cut(s)	175
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	1 cut(s)	1101
Psp124BI	GAGCTC	1 cut(s)	1091
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	3 cut(s)	215, 434, 1347
PspFI	CCCAGC	2 cut(s)	662, 1534
PspGI	CCWGG	3 cut(s)	215, 434, 1347
PspN4I	GGNNCC	7 cut(s)	64, 211, 221, 1572, 1588, 1691, 1821
PspOMI	GGGCCC	1 cut(s)	1689
PspPI	GGNCC	5 cut(s)	112, 219, 1278, 1689, 1690
PspPPI	RGGWCCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	6 cut(s)	64, 314, 380, 1038, 1596, 1821
RsaNI	GTAC	6 cut(s)	63, 313, 379, 1037, 1595, 1820
RseI	CAYNNNNRTG	2 cut(s)	761, 1286
SacI	GAGCTC	1 cut(s)	1091
SaqAI	TTAA	6 cut(s)	96, 318, 548, 1020, 1049, 1442
SatI	GCNGC	2 cut(s)	208, 213
Sau3AI	GATC	7 cut(s)	967, 1256, 1363, 1381, 1408, 1480, 1741
Sau96I	GGNCC	5 cut(s)	112, 219, 1278, 1689, 1690
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	3 cut(s)	217, 436, 1349
SduI	GDGCHC	3 cut(s)	505, 1091, 1693
SfaNI	GCATC	4 cut(s)	694, 724, 840, 1759
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	2 cut(s)	219, 1278
SmiMI	CAYNNNNRTG	2 cut(s)	761, 1286
SmlI	CTYRAG	3 cut(s)	95, 1019, 1454
SmoI	CTYRAG	3 cut(s)	95, 1019, 1454
SpeI	ACTAGT	1 cut(s)	1358
SphI	GCATGC	2 cut(s)	760, 1401
SsiI	CCGC	6 cut(s)	174, 207, 213, 343, 587, 1687
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	7 cut(s)	633, 690, 831, 900, 1005, 1322, 1359
SstI	GAGCTC	1 cut(s)	1091
StyD4I	CCNGG	3 cut(s)	215, 434, 1347
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	204, 1174, 1735
TaiI	ACGT	2 cut(s)	287, 471
TaqI	TCGA	4 cut(s)	141, 750, 1098, 1420
TatI	WGTACW	4 cut(s)	312, 378, 1036, 1594
TauI	GCSGC	2 cut(s)	210, 215
TfiI	GAWTC	2 cut(s)	267, 824
Tru1I	TTAA	6 cut(s)	96, 318, 548, 1020, 1049, 1442
Tru9I	TTAA	6 cut(s)	96, 318, 548, 1020, 1049, 1442
TscAI	CASTG	3 cut(s)	209, 268, 1738
TspDTI	ATGAA	3 cut(s)	632, 933, 1508
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	209, 268, 1738
Vha464I	CTTAAG	2 cut(s)	95, 1019
VpaK11BI	GGWCC	2 cut(s)	219, 1278
XapI	RAATTY	4 cut(s)	373, 809, 836, 1515
XceI	RCATGY	5 cut(s)	760, 1043, 1105, 1308, 1401
XmnI	GAANNNNTTC	2 cut(s)	746, 1727
XspI	CTAG	7 cut(s)	633, 690, 831, 900, 1005, 1322, 1359
ZraI	GACGTC	1 cut(s)	469
Zsp2I	ATGCAT	3 cut(s)	1306, 1399, 1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.