Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

9137006 .. 9137728

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG055900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTATTCCAAATGCAGCAGTTTGGGGGCCGGAAGGCAGGTTTTCAAGCTCATGGGTAATAAGCAAGACATTGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCAGTTACGACCACCTTGGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGATTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTGATGAGGAACATTGTGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGTTGATGAACCAGCTCAAAAATATGCCATGTAAAGCTGGCGGTCAAGTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCCTCAATCTTCTGCTCCCTATGCTGAAGAAGGTAGATGGGAGCTGGTAGAGAAGGTGACACGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGAGCCATTTGTTGGGTAGAAGTTGAAAGTAGAGTGCATGCTTTCACTGTATCCGACCGGCTGCATCCTCTGAAGGAGGAAATACACTCAGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGAAGATGCTTCAGTAACTAACGCCGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

240

Amino Acids

26.89

Weight (kDa)

5.38

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 70	1.4e-10	PPR repeat family
PPR	PF01535	25 - 55	2.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	576
AciI	CCGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	3 cut(s)	516, 656, 684
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	5 cut(s)	46, 143, 247, 590, 661
AluBI	AGCT	7 cut(s)	49, 323, 352, 374, 433, 514, 671
AluI	AGCT	7 cut(s)	49, 323, 352, 374, 433, 514, 671
Alw26I	GTCTC	1 cut(s)	541
AoxI	GGCC	2 cut(s)	27, 447
ApeKI	GCWGC	2 cut(s)	15, 625
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	27, 612
BccI	CCATC	2 cut(s)	501, 673
BceAI	ACGGC	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	2 cut(s)	221, 721
BfuAI	ACCTGC	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	2 cut(s)	16, 626
BlsI	GCNGC	2 cut(s)	17, 627
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	28, 471
BmsI	GCATC	2 cut(s)	637, 685
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	183, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	183, 418
BseGI	GGATG	3 cut(s)	332, 547, 628
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	27, 612
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	2 cut(s)	29, 449
BsiEI	CGRYCG	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	30, 622
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	29, 449
Bsp143I	GATC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	2 cut(s)	29, 449
BspCNI	CTCAG	1 cut(s)	665
BspLI	GGNNCC	2 cut(s)	28, 471
BspMI	ACCTGC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	183, 418
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	183, 418
Bst4CI	ACNGT	2 cut(s)	613, 666
BstC8I	GCNNGC	4 cut(s)	298, 376, 567, 603
BstDEI	CTNAG	2 cut(s)	100, 652
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	332, 547, 628
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	307
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 491
BstNSI	RCATGY	3 cut(s)	300, 554, 605
BstV1I	GCAGC	2 cut(s)	27, 612
BstV2I	GAAGAC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	29, 449
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	332, 547, 628
BtsIMutI	CAGTG	1 cut(s)	609
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	4 cut(s)	298, 376, 567, 603
Cfr10I	RCCGGY	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
DdeI	CTNAG	2 cut(s)	100, 652
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	183, 418
Eco57I	CTGAAG	3 cut(s)	516, 656, 684
EcoT14I	CCWWGG	2 cut(s)	183, 418
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	2 cut(s)	183, 418
Fnu4HI	GCNGC	2 cut(s)	16, 626
FokI	GGATG	3 cut(s)	339, 554, 615
Fsp4HI	GCNGC	2 cut(s)	16, 626
FspBI	CTAG	2 cut(s)	221, 721
GluI	GCNGC	2 cut(s)	16, 626
GsaI	CCCAGC	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	29, 449
HapII	CCGG	2 cut(s)	30, 622
HinfI	GANTC	1 cut(s)	414
HpaII	CCGG	2 cut(s)	30, 622
HphI	GGTGA	1 cut(s)	538
Hpy188I	TCNGA	2 cut(s)	619, 636
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	27, 224, 494, 517, 631
HpyCH4III	ACNGT	2 cut(s)	613, 666
HpyCH4V	TGCA	7 cut(s)	15, 133, 226, 296, 395, 601, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 491
HpyF3I	CTNAG	2 cut(s)	100, 652
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	469, 490, 511
Lsp1109I	GCAGC	2 cut(s)	27, 612
LweI	GCATC	2 cut(s)	637, 685
MaeI	CTAG	2 cut(s)	221, 721
MaeIII	GTNAC	3 cut(s)	172, 526, 703
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	7 cut(s)	155, 450, 471, 509, 695, 698, 704
MluCI	AATT	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	447, 642
MnlI	CCTC	6 cut(s)	118, 277, 483, 549, 634, 642
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	2 cut(s)	89, 114
MspI	CCGG	2 cut(s)	30, 622
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	2 cut(s)	232, 491
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	28, 471
NmuCI	GTSAC	1 cut(s)	526
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	3 cut(s)	300, 554, 605
PaeI	GCATGC	2 cut(s)	300, 605
PciI	ACATGT	1 cut(s)	550
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	576
PkrI	GCNGC	2 cut(s)	17, 627
PscI	ACATGT	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	28, 471
PspPI	GGNCC	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	149
RseI	CAYNNNNRTG	2 cut(s)	89, 114
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	16, 626
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	637, 685
SmiMI	CAYNNNNRTG	2 cut(s)	89, 114
SphI	GCATGC	2 cut(s)	300, 605
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	2 cut(s)	221, 721
StyI	CCWWGG	2 cut(s)	183, 418
TaaI	ACNGT	2 cut(s)	613, 666
TaqI	TCGA	1 cut(s)	319
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	2 cut(s)	15, 625
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	359, 705
TspRI	CASTG	1 cut(s)	616
Tth111I	GACNNNGTC	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	576
XceI	RCATGY	3 cut(s)	300, 554, 605
XspI	CTAG	2 cut(s)	221, 721
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.