Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

14695157 .. 14696992

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGCCCTCTTTCTCTTCCTCCTCTCTCCCTCCTCTGACCAAGCCTAAACGCCTCGCCGCCACCAAGCCTCCCTGCGTCGTCCAGTCTCTCCTCAAGCTCTGTTCTCAGGGCAATCTCTCGCAAGCCCTCTCCTCTCTCGACCTTCTAGTCCAAAAGGGTATCCGCTTACCCGCCAAGACTCTCGCTTTCCTCTTGGAACAGTGCGGCGCCGCCAGGTCCCTCCGAGAAGGCAAATGGGTTCACATCCATATGAAGCTCACTGGATTCAAGCACCCCTCTACGTTTTTAGCCAACCATTTGATAAATATGTACTTTAAGTGTGCCGATGATGTAGAAGCCCGCAGGGTGTTTGATAAAATGGCTGTGAGGAATTTGTACTCTTGGAACAATATGCTTTCTGGGTATGCTAAGATGAGGAAGTTGAGCGAGGCCAGGAGTTTGTTTGATAAAATGCCGGAGAAGGACGTCGTGTCGTGGAACACCATGGTCATTGGTTATGCCCAGAGTGGAGTTTGTGATGAGGCTTTGAGGTTTTATAGAGAGTTGAGAAGGTTGTCAATTGGTTTCAATGAGTTTAGTTTTGCGGGTGTTTTGACTGCTTGTGTGAAGTTGAAGGAATTGGGGCTTACTAGGCAAGTTCATGCGCAGGTTTTGGTTGCCGGGTTTTTGTCAAATGTTGTGCTTTCTAGTTCGGTTGTTGATGCTTATGCAAAATGCGGGGAGATGAGAGATGCGAGGAAAGTATTCGATAGCATGCCTGTGAAGGATGTTCTTGTTTGGACAACACTGGTTTCGGGGTATGCAAAATTTGGTGATATGGAATCAGCGAGTGAACTGTTCAATCGGATGCCCGAGAAGAATCCTGTATCGTGGACAGCTGTGATTTCTGGCTATGCTAGAAATGGTTTGGGGCATGAAGCCCTTGCATTTTTTACAGAAATGATGTTCTATCAAGTTAGGCCTGATCAGTTTACGTATAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCACTTAAGCATGGTAAACAAGTACATGCGTCTTTAGTACGAAGTAATTTTAGACCCAACACAATTGTTGTGAGCTCTCTTATCGACATGTATTCAAAATGTGGGGATTTAGGGGCAGGAAGGCGAGTTTTCGAGCTCATGGGTGATAAGCAAGATACTGTATTATGGAACACATTGATATCTGCCTTAGCACAGCATGGTAACGGTATAGAGGCAATGCGGACGTTTGAGGACATGGTCAGATCAGGAATGAAGCCGGATCGGACCACCTTTGTGGTCATTCTCAATGCATGTAGTCATTCTGGTCTAGTGCAGGAAGGGCTTACTTTTTTCGAGTGCATGACTAGTGATCATGGCATTGTTCCTGATGTAGAACATTATGCATGCGTAGTTGATCTCTTGGGTCGAGCTGGACGTTTTGACGAGTTAATCAACCAGCTCAAGAATATGCCAGGTAAAGGTGGGGATCAAGTTTGGAATGCATTACTTGGTGTTAGTAGAATTCATGGAAACACAAAGATGGGAAGAAAAGTGGCTGAACACCTTATTGAGATGGAGCCTCAATCTTCTGGTGCCTATGTATTACTTTCAAGTATATATGCCGAACACGGGAAATGGGAGTTGGTAGAGAAGGTGAGACAGCTTATGGATGAGAGACAAGTGAGGAAAGAGCGAGCCCTTAGTTGGATAGAAGTTGAAAATAGAGTGAATGCTTTCACTGTATCGGATCGGTTGCATCCTCTGAAAGAAGAAATATACTCAGTTTTGGAACATTTAGCTGGCCAGATGGAAGAAGACGTTTCAGTACCTAATTCCTTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

612

Amino Acids

68.33

Weight (kDa)

8.7

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	126 - 155	9.9e-08	PPR repeat
PPR_2	PF13041	154 - 203	2.2e-06	PPR repeat family
PPR	PF01535	259 - 287	4.9e-07	PPR repeat
PPR_2	PF13041	287 - 334	6.6e-11	PPR repeat family
PPR	PF01535	289 - 315	2.1e-06	PPR repeat
PPR_2	PF13041	389 - 436	1.4e-12	PPR repeat family
PPR_3	PF13812	389 - 435	2.1e-06	Pentatricopeptide repeat domain
PPR	PF01535	391 - 420	2.6e-07	PPR repeat
E_motif	PF20431	506 - 568	2.5e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	468
Acc16I	TGCGCA	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	2 cut(s)	206, 1583
AciI	CCGC	9 cut(s)	57, 163, 171, 204, 210, 340, 584, 717, 1231
AclWI	GGATC	3 cut(s)	1278, 1485, 1746
AcoI	YGGCCR	1 cut(s)	1792
AcsI	RAATTY	3 cut(s)	370, 806, 1512
AcyI	GRCGYC	2 cut(s)	207, 465
AfaI	GTAC	5 cut(s)	311, 377, 1035, 1050, 1818
AfiI	CCNNNNNNNGG	3 cut(s)	1469, 1620, 1695
AflII	CTTAAG	1 cut(s)	1016
AflIII	ACRYGT	1 cut(s)	1098
AgsI	TTSAA	7 cut(s)	268, 568, 613, 841, 1107, 1602, 1709
AhdI	GACNNNNNGTC	1 cut(s)	469
AhlI	ACTAGT	1 cut(s)	1355
AjnI	CCWGG	3 cut(s)	212, 431, 1462
AjuI	GAANNNNNNNTTGG	2 cut(s)	1616, 1648
AleI	CACNNNNGTG	1 cut(s)	1283
Alw21I	GWGCWC	2 cut(s)	1088, 1149
Alw26I	GTCTC	3 cut(s)	90, 1642, 1660
AlwI	GGATC	3 cut(s)	1278, 1485, 1746
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	429, 959, 1792
ApoI	RAATTY	3 cut(s)	370, 806, 1512
Asp700I	GAANNNNTTC	2 cut(s)	743, 1724
AspLEI	GCGC	2 cut(s)	209, 646
AspS9I	GGNCC	2 cut(s)	216, 1275
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	3 cut(s)	824, 1166, 1657
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	216, 1275
BalI	TGGCCA	1 cut(s)	1794
BanI	GGYRCC	2 cut(s)	206, 1583
BanII	GRGCYC	3 cut(s)	1088, 1149, 1690
BbsI	GAAGAC	1 cut(s)	1812
Bbv12I	GWGCWC	2 cut(s)	1088, 1149
BccI	CCATC	3 cut(s)	1525, 1558, 1792
BciT130I	CCWGG	3 cut(s)	214, 433, 1464
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	2 cut(s)	964, 1360
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	3 cut(s)	90, 1642, 1660
BcuI	ACTAGT	1 cut(s)	1355
BfaI	CTAG	7 cut(s)	146, 630, 687, 897, 1002, 1319, 1356
BfoI	RGCGCY	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	1016
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	57, 205, 210
BlsI	GCNGC	3 cut(s)	58, 206, 211
Bme1390I	CCNGG	4 cut(s)	214, 433, 661, 1464
Bme18I	GGWCC	2 cut(s)	216, 1275
BmeRI	GACNNNNNGTC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	2 cut(s)	216, 1275
BmiI	GGNNCC	4 cut(s)	208, 218, 1569, 1585
BmrFI	CCNGG	4 cut(s)	214, 433, 661, 1464
BmsI	GCATC	4 cut(s)	691, 721, 837, 1756
BpiI	GAAGAC	1 cut(s)	1812
Bpu10I	CCTNAGC	1 cut(s)	1198
BpuEI	CTTGAG	2 cut(s)	77, 1436
BpuMI	CCSGG	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	975
BsaHI	GRCGYC	2 cut(s)	207, 465
BsaJI	CCNNGG	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	1469, 1620, 1695
Bse1I	ACTGG	3 cut(s)	82, 265, 792
Bse3DI	GCAATG	1 cut(s)	1233
BseBI	CCWGG	3 cut(s)	214, 433, 1464
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	5 cut(s)	243, 772, 852, 1666, 1747
BseLI	CCNNNNNNNGG	3 cut(s)	1469, 1620, 1695
BseMI	GCAATG	1 cut(s)	1233
BseMII	CTCAG	2 cut(s)	119, 1785
BseNI	ACTGG	3 cut(s)	82, 265, 792
BseRI	GAGGAG	4 cut(s)	10, 21, 80, 121
BsgI	GTGCAG	1 cut(s)	1343
BshFI	GGCC	3 cut(s)	431, 961, 1794
BshNI	GGYRCC	2 cut(s)	206, 1583
BsiHKAI	GWGCWC	2 cut(s)	1088, 1149
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	3 cut(s)	455, 660, 1268
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	1469, 1620, 1695
BsmAI	GTCTC	3 cut(s)	90, 1642, 1660
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	2 cut(s)	1495, 1726
BsnI	GGCC	3 cut(s)	431, 961, 1794
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	3 cut(s)	1088, 1149, 1690
Bsp143I	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	9 cut(s)	57, 163, 171, 204, 210, 340, 584, 717, 1231
BspANI	GGCC	3 cut(s)	431, 961, 1794
BspCNI	CTCAG	2 cut(s)	118, 1784
BspLI	GGNNCC	4 cut(s)	208, 218, 1569, 1585
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	3 cut(s)	1278, 1485, 1746
BspT107I	GGYRCC	2 cut(s)	206, 1583
BspTI	CTTAAG	1 cut(s)	1016
BsrDI	GCAATG	1 cut(s)	1233
BsrI	ACTGG	3 cut(s)	82, 265, 792
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
BssNI	GRCGYC	2 cut(s)	207, 465
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	3 cut(s)	214, 433, 1464
Bst4CI	ACNGT	5 cut(s)	201, 837, 1171, 1217, 1732
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	2 cut(s)	207, 465
BstAFI	CTTAAG	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	975
BstC8I	GCNNGC	6 cut(s)	123, 340, 755, 1396, 1686, 1792
BstDEI	CTNAG	5 cut(s)	105, 408, 1198, 1691, 1771
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	5 cut(s)	243, 772, 852, 1666, 1747
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	209, 646
BstKTI	GATC	7 cut(s)	967, 1256, 1273, 1363, 1408, 1480, 1741
BstMAI	GTCTC	3 cut(s)	90, 1642, 1660
BstMBI	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
BstMWI	GCNNNNNNNGC	3 cut(s)	631, 1007, 1330
BstNI	CCWGG	3 cut(s)	214, 433, 1464
BstNSI	RCATGY	5 cut(s)	757, 1040, 1102, 1305, 1398
BstSCI	CCNGG	4 cut(s)	212, 431, 659, 1462
BstSNI	TACGTA	1 cut(s)	975
BstV2I	GAAGAC	1 cut(s)	1812
BstXI	CCANNNNNNTGG	1 cut(s)	1285
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	431, 961, 1794
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	5 cut(s)	243, 772, 852, 1666, 1747
BtsIMutI	CAGTG	4 cut(s)	206, 258, 785, 1728
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	6 cut(s)	123, 340, 755, 1396, 1686, 1792
CfoI	GCGC	2 cut(s)	209, 646
Cfr13I	GGNCC	2 cut(s)	216, 1275
CseI	GACGC	2 cut(s)	64, 1029
Csp6I	GTAC	5 cut(s)	310, 376, 1034, 1049, 1817
CviQI	GTAC	5 cut(s)	310, 376, 1034, 1049, 1817
DdeI	CTNAG	5 cut(s)	105, 408, 1198, 1691, 1771
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	7 cut(s)	966, 1255, 1272, 1362, 1407, 1479, 1740
DpnII	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
DrdI	GACNNNNNNGTC	1 cut(s)	146
DriI	GACNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	1792
Eam1104I	CTCTTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	19
Ecl136II	GAGCTC	2 cut(s)	1086, 1147
Eco105I	TACGTA	1 cut(s)	975
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	961
Eco24I	GRGCYC	3 cut(s)	1088, 1149, 1690
Eco32I	GATATC	1 cut(s)	1191
Eco47I	GGWCC	2 cut(s)	216, 1275
Eco53kI	GAGCTC	2 cut(s)	1086, 1147
Eco88I	CYCGRG	1 cut(s)	851
EcoICRI	GAGCTC	2 cut(s)	1086, 1147
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	1512
EcoRII	CCWGG	3 cut(s)	212, 431, 1462
EcoRV	GATATC	1 cut(s)	1191
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	3 cut(s)	1303, 1396, 1495
EcoT38I	GRGCYC	3 cut(s)	1088, 1149, 1690
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	483
FaqI	GGGAC	1 cut(s)	202
FauI	CCCGC	4 cut(s)	178, 347, 577, 710
FauNDI	CATATG	1 cut(s)	249
FbaI	TGATCA	2 cut(s)	964, 1360
Fnu4HI	GCNGC	3 cut(s)	57, 205, 210
FokI	GGATG	5 cut(s)	230, 779, 859, 1673, 1734
FriOI	GRGCYC	3 cut(s)	1088, 1149, 1690
Fsp4HI	GCNGC	3 cut(s)	57, 205, 210
FspBI	CTAG	7 cut(s)	146, 630, 687, 897, 1002, 1319, 1356
FspI	TGCGCA	1 cut(s)	645
GlaI	GCGC	2 cut(s)	208, 645
GluI	GCNGC	3 cut(s)	57, 205, 210
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	431, 961, 1794
HapII	CCGG	3 cut(s)	455, 660, 1268
HgaI	GACGC	2 cut(s)	64, 1029
HhaI	GCGC	2 cut(s)	209, 646
Hin1I	GRCGYC	2 cut(s)	207, 465
Hin6I	GCGC	2 cut(s)	207, 644
HinP1I	GCGC	2 cut(s)	207, 644
HinfI	GANTC	4 cut(s)	178, 264, 821, 859
HpaII	CCGG	3 cut(s)	455, 660, 1268
HphI	GGTGA	3 cut(s)	824, 1166, 1657
Hpy166II	GTNNAC	5 cut(s)	241, 833, 873, 972, 1028
Hpy188I	TCNGA	7 cut(s)	36, 224, 846, 1253, 1275, 1738, 1755
Hpy188III	TCNNGA	4 cut(s)	137, 1257, 1376, 1453
Hpy8I	GTNNAC	5 cut(s)	241, 833, 873, 972, 1028
Hpy99I	CGWCG	2 cut(s)	80, 470
HpyAV	CCTTC	9 cut(s)	152, 221, 454, 543, 607, 757, 1125, 1322, 1636
HpyCH4III	ACNGT	5 cut(s)	201, 837, 1171, 1217, 1732
HpyCH4IV	ACGT	6 cut(s)	281, 465, 974, 1235, 1426, 1809
HpyCH4V	TGCA	9 cut(s)	710, 803, 926, 1301, 1324, 1350, 1394, 1493, 1747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	631, 1007, 1330
HpyF3I	CTNAG	5 cut(s)	105, 408, 1198, 1691, 1771
HpySE526I	ACGT	6 cut(s)	281, 465, 974, 1235, 1426, 1809
Hsp92I	GRCGYC	2 cut(s)	207, 465
HspAI	GCGC	2 cut(s)	207, 644
KasI	GGCGCC	1 cut(s)	206
Ksp22I	TGATCA	2 cut(s)	964, 1360
Kzo9I	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
LmnI	GCTCC	1 cut(s)	1567
LweI	GCATC	4 cut(s)	691, 721, 837, 1756
MaeI	CTAG	7 cut(s)	146, 630, 687, 897, 1002, 1319, 1356
MaeII	ACGT	6 cut(s)	281, 465, 974, 1235, 1426, 1809
MaeIII	GTNAC	1 cut(s)	1211
MalI	GATC	7 cut(s)	966, 1255, 1272, 1362, 1407, 1479, 1740
MboI	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
MboII	GAAGA	7 cut(s)	6, 868, 1548, 1569, 1772, 1814, 1817
MfeI	CAATTG	2 cut(s)	558, 1074
MhlI	GDGCHC	3 cut(s)	1088, 1149, 1690
MlsI	TGGCCA	1 cut(s)	1794
MluCI	AATT	8 cut(s)	370, 558, 617, 806, 1057, 1074, 1512, 1822
MluNI	TGGCCA	1 cut(s)	1794
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	1676
Mox20I	TGGCCA	1 cut(s)	1794
Mph1103I	ATGCAT	3 cut(s)	1303, 1396, 1495
MroXI	GAANNNNTTC	2 cut(s)	743, 1724
MscI	TGGCCA	1 cut(s)	1794
MseI	TTAA	3 cut(s)	315, 1017, 1439
MslI	CAYNNNNRTG	4 cut(s)	248, 758, 1283, 1529
Msp20I	TGGCCA	1 cut(s)	1794
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	3 cut(s)	455, 660, 1268
MspR9I	CCNGG	4 cut(s)	214, 433, 661, 1464
MunI	CAATTG	2 cut(s)	558, 1074
Mva1269I	GAATGC	2 cut(s)	1495, 1726
MvaI	CCWGG	3 cut(s)	214, 433, 1464
MwoI	GCNNNNNNNGC	3 cut(s)	631, 1007, 1330
NarI	GGCGCC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	661
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
NlaIV	GGNNCC	4 cut(s)	208, 218, 1569, 1585
NsbI	TGCGCA	1 cut(s)	645
NsiI	ATGCAT	3 cut(s)	1303, 1396, 1495
NspI	RCATGY	5 cut(s)	757, 1040, 1102, 1305, 1398
OliI	CACNNNNGTG	1 cut(s)	1283
PaeI	GCATGC	2 cut(s)	757, 1398
PceI	AGGCCT	1 cut(s)	961
PciI	ACATGT	1 cut(s)	1098
PcsI	WCGNNNNNNNCGW	1 cut(s)	1423
PctI	GAATGC	2 cut(s)	1495, 1726
PdmI	GAANNNNTTC	2 cut(s)	743, 1724
PfeI	GAWTC	3 cut(s)	264, 821, 859
PflFI	GACNNNGTC	1 cut(s)	1247
PkrI	GCNGC	3 cut(s)	58, 206, 211
PleI	GAGTC	1 cut(s)	172
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	975
PpuMI	RGGWCCY	1 cut(s)	216
PscI	ACATGT	1 cut(s)	1098
Psp124BI	GAGCTC	2 cut(s)	1088, 1149
Psp5II	RGGWCCY	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	212, 431, 1462
PspGI	CCWGG	3 cut(s)	212, 431, 1462
PspN4I	GGNNCC	4 cut(s)	208, 218, 1569, 1585
PspPI	GGNCC	2 cut(s)	216, 1275
PspPPI	RGGWCCY	1 cut(s)	216
PsyI	GACNNNGTC	1 cut(s)	1247
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	5 cut(s)	311, 377, 1035, 1050, 1818
RsaNI	GTAC	5 cut(s)	310, 376, 1034, 1049, 1817
RseI	CAYNNNNRTG	4 cut(s)	248, 758, 1283, 1529
SacI	GAGCTC	2 cut(s)	1088, 1149
SaqAI	TTAA	3 cut(s)	315, 1017, 1439
SatI	GCNGC	3 cut(s)	57, 205, 210
Sau3AI	GATC	7 cut(s)	964, 1253, 1270, 1360, 1405, 1477, 1738
Sau96I	GGNCC	2 cut(s)	216, 1275
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	4 cut(s)	214, 433, 661, 1464
SduI	GDGCHC	3 cut(s)	1088, 1149, 1690
SfaNI	GCATC	4 cut(s)	691, 721, 837, 1756
SfoI	GGCGCC	1 cut(s)	208
SinI	GGWCC	2 cut(s)	216, 1275
SmiMI	CAYNNNNRTG	4 cut(s)	248, 758, 1283, 1529
SmlI	CTYRAG	4 cut(s)	92, 1016, 1451, 1828
SmoI	CTYRAG	4 cut(s)	92, 1016, 1451, 1828
SnaBI	TACGTA	1 cut(s)	975
SpeI	ACTAGT	1 cut(s)	1355
SphI	GCATGC	2 cut(s)	757, 1398
Sse9I	AATT	8 cut(s)	370, 558, 617, 806, 1057, 1074, 1512, 1822
SseBI	AGGCCT	1 cut(s)	961
SsiI	CCGC	9 cut(s)	57, 163, 171, 204, 210, 340, 584, 717, 1231
SspDI	GGCGCC	1 cut(s)	206
SspMI	CTAG	7 cut(s)	146, 630, 687, 897, 1002, 1319, 1356
SstI	GAGCTC	2 cut(s)	1088, 1149
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	4 cut(s)	212, 431, 659, 1462
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	5 cut(s)	201, 837, 1171, 1217, 1732
TaiI	ACGT	6 cut(s)	284, 468, 977, 1238, 1429, 1812
TaqI	TCGA	6 cut(s)	138, 747, 1095, 1143, 1344, 1417
TasI	AATT	8 cut(s)	370, 558, 617, 806, 1057, 1074, 1512, 1822
TatI	WGTACW	3 cut(s)	309, 375, 1033
TauI	GCSGC	3 cut(s)	59, 207, 212
TfiI	GAWTC	3 cut(s)	264, 821, 859
Tru1I	TTAA	3 cut(s)	315, 1017, 1439
Tru9I	TTAA	3 cut(s)	315, 1017, 1439
TscAI	CASTG	4 cut(s)	206, 265, 792, 1735
TspDTI	ATGAA	5 cut(s)	266, 629, 930, 1277, 1505
TspRI	CASTG	4 cut(s)	206, 265, 792, 1735
Tth111I	GACNNNGTC	1 cut(s)	1247
Vha464I	CTTAAG	1 cut(s)	1016
VpaK11BI	GGWCC	2 cut(s)	216, 1275
XapI	RAATTY	3 cut(s)	370, 806, 1512
XceI	RCATGY	5 cut(s)	757, 1040, 1102, 1305, 1398
XmnI	GAANNNNTTC	2 cut(s)	743, 1724
XspI	CTAG	7 cut(s)	146, 630, 687, 897, 1002, 1319, 1356
ZraI	GACGTC	1 cut(s)	466
Zsp2I	ATGCAT	3 cut(s)	1303, 1396, 1495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.