Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

11058684 .. 11060283

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTACGTCAAATGCGGCGATGAGGTCGATGCACGCAAAGTGTTTGATAAAATGTTTGTGACAAATTTGTACTCGTGGAACAATATGCTATCTGGGTATGTGAAGATGAGGAATCTTAAGGAGGCCCGGAGCTTGTTTGAGAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTATGCCCAGAGTGTGGATTGTGTTTTGACTGTGTGTGTGAATATGAGGGAATGGGAGCTTATTAGGCAGGCTCATGGGCAGGTCTTGGTTGCTGGGTTTTTGTCGAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAAGTATGGAGAGATGGCGGATGCCAGGAGATTGTTCGATGAGATGGCTCTGAGGGATGTTCTTACTTGGACCACACTGGTTTCGGTATATGCTAAATGGGGTGCTATGAAATCAGCTAGTGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCGTGGATATCAATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGTGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAGTCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATATCTTCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAATACGAAGTAATTTAAGACCCAACTCGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCTGCGGTTTGGGGGCCGGAAGGCAGGTTTTCAAGCAAGACATCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGACATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTAATACCACCTTTGTTGTCATTCTCAATGGTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTGATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCAAGCTGGATGTTTTGATGAGTTGGTGAACCGGCTCGAAAATATGCCATGTAAAGCTGGCGGTCAAGTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCCGAACACCTAATTGAGTTGGAGCCTCAATCTTCTGCTCCCTATGTTTTGCTTTCGAGCATATATGCTGAAGAAGGTAGATGGGAGCTGGTAGAGAAGGTGAGATGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGGGCCATTAGTTGGGTAGAAGTTGAAAGTAGAATGCATGCTTTCACTGTATCAGACCGGCTGCATCCTCTGAAAGAGGAAATATACTCAGTTTTGAAACAGTTAGCTGACCAGATGGAAGAAGATGCTTCAGTAACTAACGCTGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

480

Amino Acids

54.21

Weight (kDa)

5.77

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 53	1e-05	PPR repeat family
PPR	PF01535	24 - 53	1.1e-07	PPR repeat
PPR_2	PF13041	161 - 208	1.3e-08	PPR repeat family
PPR	PF01535	163 - 189	4.2e-06	PPR repeat
PPR_2	PF13041	258 - 305	2.1e-10	PPR repeat family
PPR	PF01535	260 - 290	4.2e-06	PPR repeat
E_motif	PF20431	375 - 437	1.5e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	259, 748
AccB7I	CCANNNNNTGG	2 cut(s)	202, 1302
AccBSI	CCGCTC	1 cut(s)	1291
AciI	CCGC	5 cut(s)	15, 350, 738, 1083, 1291
AcoI	YGGCCR	1 cut(s)	1152
AcsI	RAATTY	2 cut(s)	64, 654
AcuI	CTGAAG	2 cut(s)	1242, 1404
AfaI	GTAC	2 cut(s)	5, 71
AfiI	CCNNNNNNNGG	2 cut(s)	202, 1302
AflII	CTTAAG	2 cut(s)	116, 638
AflIII	ACRYGT	2 cut(s)	720, 1276
AgsI	TTSAA	6 cut(s)	575, 766, 848, 952, 1316, 1387
AjnI	CCWGG	2 cut(s)	167, 356
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	8 cut(s)	132, 247, 449, 1028, 1079, 1138, 1240, 1397
AluI	AGCT	8 cut(s)	132, 247, 449, 1028, 1079, 1138, 1240, 1397
Alw26I	GTCTC	2 cut(s)	824, 1267
AoxI	GGCC	5 cut(s)	123, 581, 747, 1152, 1293
ApeKI	GCWGC	2 cut(s)	735, 1351
ApoI	RAATTY	2 cut(s)	64, 654
AspS9I	GGNCC	4 cut(s)	124, 402, 747, 1293
AsuC2I	CCSGG	2 cut(s)	127, 485
AsuHPI	GGTGA	3 cut(s)	193, 1060, 1264
AvaII	GGWCC	1 cut(s)	402
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	722, 1338
BccI	CCATC	5 cut(s)	340, 370, 1227, 1251, 1399
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	2 cut(s)	169, 358
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	127, 485
BcoDI	GTCTC	2 cut(s)	824, 1267
BfaI	CTAG	5 cut(s)	450, 519, 624, 926, 1441
BfrI	CTTAAG	2 cut(s)	116, 638
BfuAI	ACCTGC	2 cut(s)	259, 748
BisI	GCNGC	3 cut(s)	16, 736, 1352
BlsI	GCNGC	3 cut(s)	17, 737, 1353
Bme1390I	CCNGG	4 cut(s)	127, 169, 358, 485
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	4 cut(s)	124, 402, 747, 1293
BmiI	GGNNCC	2 cut(s)	748, 1176
BmrFI	CCNGG	4 cut(s)	127, 169, 358, 485
BmsI	GCATC	7 cut(s)	19, 313, 343, 459, 555, 1363, 1405
BpiI	GAAGAC	1 cut(s)	855
Bpu10I	CCTNAGC	1 cut(s)	805
BpuMI	CCSGG	2 cut(s)	127, 485
BsaJI	CCNNGG	2 cut(s)	177, 1123
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 1302
Bse118I	RCCGGY	3 cut(s)	874, 1053, 1347
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	833
BseBI	CCWGG	2 cut(s)	169, 358
BseDI	CCNNGG	2 cut(s)	177, 1123
BseGI	GGATG	8 cut(s)	163, 328, 358, 394, 474, 1037, 1273, 1354
BseLI	CCNNNNNNNGG	2 cut(s)	202, 1302
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	5 cut(s)	141, 374, 465, 1392, 1425
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	722, 1338
BseYI	CCCAGC	2 cut(s)	281, 1138
BsgI	GTGCAG	1 cut(s)	950
BshFI	GGCC	5 cut(s)	125, 583, 749, 1154, 1295
BsiSI	CCGG	6 cut(s)	127, 485, 750, 875, 1054, 1348
BslI	CCNNNNNNNGG	2 cut(s)	202, 1302
BsmAI	GTCTC	2 cut(s)	824, 1267
BsmI	GAATGC	2 cut(s)	1102, 1329
BsnI	GGCC	5 cut(s)	125, 583, 749, 1154, 1295
Bsp143I	GATC	3 cut(s)	463, 586, 1012
Bsp19I	CCATGG	2 cut(s)	177, 1123
BspACI	CCGC	5 cut(s)	15, 350, 738, 1083, 1291
BspANI	GGCC	5 cut(s)	125, 583, 749, 1154, 1295
BspCNI	CTCAG	5 cut(s)	142, 375, 466, 1391, 1426
BspLI	GGNNCC	2 cut(s)	748, 1176
BspMI	ACCTGC	2 cut(s)	259, 748
BspTI	CTTAAG	2 cut(s)	116, 638
BsrBI	CCGCTC	1 cut(s)	1291
BsrDI	GCAATG	1 cut(s)	833
BsrFI	RCCGGY	3 cut(s)	874, 1053, 1347
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	3 cut(s)	874, 1053, 1347
BssECI	CCNNGG	2 cut(s)	177, 1123
BssMI	GATC	3 cut(s)	463, 586, 1012
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	2 cut(s)	177, 1123
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	2 cut(s)	169, 358
Bst4CI	ACNGT	3 cut(s)	220, 1339, 1392
BstAFI	CTTAAG	2 cut(s)	116, 638
BstAPI	GCANNNNNTGC	2 cut(s)	541, 554
BstC8I	GCNNGC	7 cut(s)	34, 258, 546, 1003, 1081, 1293, 1329
BstDEI	CTNAG	6 cut(s)	150, 383, 474, 805, 1378, 1434
BstDSI	CCRYGG	2 cut(s)	177, 1123
BstF5I	GGATG	8 cut(s)	163, 328, 358, 394, 474, 1037, 1273, 1354
BstKTI	GATC	3 cut(s)	466, 589, 1015
BstMAI	GTCTC	2 cut(s)	824, 1267
BstMBI	GATC	3 cut(s)	463, 586, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 541, 554, 937
BstNI	CCWGG	2 cut(s)	169, 358
BstNSI	RCATGY	4 cut(s)	724, 1005, 1280, 1331
BstSCI	CCNGG	4 cut(s)	125, 167, 356, 483
BstV1I	GCAGC	2 cut(s)	722, 1338
BstV2I	GAAGAC	1 cut(s)	855
BsuRI	GGCC	5 cut(s)	125, 583, 749, 1154, 1295
BtgI	CCRYGG	2 cut(s)	177, 1123
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	8 cut(s)	163, 328, 358, 394, 474, 1037, 1273, 1354
BtsIMutI	CAGTG	2 cut(s)	407, 1335
BveI	ACCTGC	2 cut(s)	259, 748
Cac8I	GCNNGC	7 cut(s)	34, 258, 546, 1003, 1081, 1293, 1329
Cfr10I	RCCGGY	3 cut(s)	874, 1053, 1347
Cfr13I	GGNCC	4 cut(s)	124, 402, 747, 1293
Csp6I	GTAC	2 cut(s)	4, 70
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviQI	GTAC	2 cut(s)	4, 70
DdeI	CTNAG	6 cut(s)	150, 383, 474, 805, 1378, 1434
DpnI	GATC	3 cut(s)	465, 588, 1014
DpnII	GATC	3 cut(s)	463, 586, 1012
EaeI	YGGCCR	1 cut(s)	1152
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	177, 1123
Eco147I	AGGCCT	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	402
Eco57I	CTGAAG	2 cut(s)	1242, 1404
EcoRII	CCWGG	2 cut(s)	167, 356
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	2 cut(s)	177, 1123
EcoT22I	ATGCAT	3 cut(s)	1003, 1102, 1329
ErhI	CCWWGG	2 cut(s)	177, 1123
FauI	CCCGC	1 cut(s)	1284
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	16, 736, 1352
FokI	GGATG	8 cut(s)	170, 335, 365, 401, 481, 1044, 1280, 1341
Fsp4HI	GCNGC	3 cut(s)	16, 736, 1352
FspBI	CTAG	5 cut(s)	450, 519, 624, 926, 1441
GluI	GCNGC	3 cut(s)	16, 736, 1352
GsaI	CCCAGC	2 cut(s)	285, 1142
HaeIII	GGCC	5 cut(s)	125, 583, 749, 1154, 1295
HapII	CCGG	6 cut(s)	127, 485, 750, 875, 1054, 1348
HinfI	GANTC	2 cut(s)	112, 1119
HpaII	CCGG	6 cut(s)	127, 485, 750, 875, 1054, 1348
HphI	GGTGA	3 cut(s)	193, 1060, 1264
Hpy166II	GTNNAC	3 cut(s)	594, 650, 1051
Hpy188I	TCNGA	4 cut(s)	384, 468, 1345, 1362
Hpy188III	TCNNGA	1 cut(s)	983
Hpy8I	GTNNAC	3 cut(s)	594, 650, 1051
HpyAV	CCTTC	4 cut(s)	747, 929, 1220, 1243
HpyCH4III	ACNGT	3 cut(s)	220, 1339, 1392
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	9 cut(s)	32, 548, 557, 838, 931, 1001, 1100, 1327, 1354
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 541, 554, 937
HpyF3I	CTNAG	6 cut(s)	150, 383, 474, 805, 1378, 1434
HpySE526I	ACGT	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	463, 586, 1012
LmnI	GCTCC	5 cut(s)	129, 244, 1174, 1195, 1237
Lsp1109I	GCAGC	2 cut(s)	722, 1338
LweI	GCATC	7 cut(s)	19, 313, 343, 459, 555, 1363, 1405
MaeI	CTAG	5 cut(s)	450, 519, 624, 926, 1441
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	58, 1423
MalI	GATC	3 cut(s)	465, 588, 1014
MbiI	CCGCTC	1 cut(s)	1291
MboI	GATC	3 cut(s)	463, 586, 1012
MboII	GAAGA	9 cut(s)	115, 490, 624, 860, 1155, 1176, 1235, 1421, 1424
MluCI	AATT	5 cut(s)	64, 654, 679, 1008, 1164
MmeI	TCCRAC	1 cut(s)	1152
Mph1103I	ATGCAT	3 cut(s)	1003, 1102, 1329
MseI	TTAA	6 cut(s)	117, 639, 668, 683, 879, 1007
MslI	CAYNNNNRTG	3 cut(s)	179, 794, 819
MspCI	CTTAAG	2 cut(s)	116, 638
MspI	CCGG	6 cut(s)	127, 485, 750, 875, 1054, 1348
MspR9I	CCNGG	4 cut(s)	127, 169, 358, 485
Mva1269I	GAATGC	2 cut(s)	1102, 1329
MvaI	CCWGG	2 cut(s)	169, 358
MwoI	GCNNNNNNNGC	4 cut(s)	253, 541, 554, 937
NciI	CCSGG	2 cut(s)	127, 485
NcoI	CCATGG	2 cut(s)	177, 1123
NdeII	GATC	3 cut(s)	463, 586, 1012
NlaIV	GGNNCC	2 cut(s)	748, 1176
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	3 cut(s)	1003, 1102, 1329
NspI	RCATGY	4 cut(s)	724, 1005, 1280, 1331
OliI	CACNNNNGTG	1 cut(s)	179
PaeI	GCATGC	2 cut(s)	1005, 1331
PceI	AGGCCT	1 cut(s)	583
PciI	ACATGT	2 cut(s)	720, 1276
PctI	GAATGC	2 cut(s)	1102, 1329
PfeI	GAWTC	2 cut(s)	112, 1119
PflFI	GACNNNGTC	1 cut(s)	854
PflMI	CCANNNNNTGG	2 cut(s)	202, 1302
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	17, 737, 1353
PscI	ACATGT	2 cut(s)	720, 1276
Psp6I	CCWGG	2 cut(s)	167, 356
PspFI	CCCAGC	2 cut(s)	281, 1138
PspGI	CCWGG	2 cut(s)	167, 356
PspN4I	GGNNCC	2 cut(s)	748, 1176
PspPI	GGNCC	4 cut(s)	124, 402, 747, 1293
PsyI	GACNNNGTC	1 cut(s)	854
RsaI	GTAC	2 cut(s)	5, 71
RsaNI	GTAC	2 cut(s)	4, 70
RseI	CAYNNNNRTG	3 cut(s)	179, 794, 819
SaqAI	TTAA	6 cut(s)	117, 639, 668, 683, 879, 1007
SatI	GCNGC	3 cut(s)	16, 736, 1352
Sau3AI	GATC	3 cut(s)	463, 586, 1012
Sau96I	GGNCC	4 cut(s)	124, 402, 747, 1293
ScrFI	CCNGG	4 cut(s)	127, 169, 358, 485
SfaNI	GCATC	7 cut(s)	19, 313, 343, 459, 555, 1363, 1405
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	3 cut(s)	179, 794, 819
SmlI	CTYRAG	2 cut(s)	116, 638
SmoI	CTYRAG	2 cut(s)	116, 638
SphI	GCATGC	2 cut(s)	1005, 1331
Sse9I	AATT	5 cut(s)	64, 654, 679, 1008, 1164
SseBI	AGGCCT	1 cut(s)	583
SsiI	CCGC	5 cut(s)	15, 350, 738, 1083, 1291
SspMI	CTAG	5 cut(s)	450, 519, 624, 926, 1441
StuI	AGGCCT	1 cut(s)	583
StyD4I	CCNGG	4 cut(s)	125, 167, 356, 483
StyI	CCWWGG	2 cut(s)	177, 1123
TaaI	ACNGT	3 cut(s)	220, 1339, 1392
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	8 cut(s)	27, 293, 308, 369, 695, 717, 1059, 1208
TasI	AATT	5 cut(s)	64, 654, 679, 1008, 1164
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	112, 1119
Tru1I	TTAA	6 cut(s)	117, 639, 668, 683, 879, 1007
Tru9I	TTAA	6 cut(s)	117, 639, 668, 683, 879, 1007
TscAI	CASTG	2 cut(s)	414, 1342
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	735, 1351
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	455, 552, 647
TspRI	CASTG	2 cut(s)	414, 1342
Tth111I	GACNNNGTC	1 cut(s)	854
Van91I	CCANNNNNTGG	2 cut(s)	202, 1302
Vha464I	CTTAAG	2 cut(s)	116, 638
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	64, 654
XceI	RCATGY	4 cut(s)	724, 1005, 1280, 1331
XspI	CTAG	5 cut(s)	450, 519, 624, 926, 1441
Zsp2I	ATGCAT	3 cut(s)	1003, 1102, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.