Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036879.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

392 .. 787

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgaaccagctcgaaaatatgccatgtaaagctggcggtcaagtttggaatgcattacttggtgtttgtagaatccatggaaatacaaagctgggaggaaaagtggccgaacaccttattgagttggagcctcaatcttctgctccctatgttttgctttcgagcatatatgctgaagaaggtagatgggagctggtagagaaggtgagacagcttatggatgagagacgtgtgaggaaagagcgggccattagttgggtagaagttgaaagtagagtgcatgctttcaccgtatcagatcggctgcatcctctgaaagaggaaatatactcagttttgaaacagttagctgaccagatggaagaagatgcttcagtaactaacgccgagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

131

Amino Acids

14.93

Weight (kDa)

5.41

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	2 cut(s)	36, 244
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	2 cut(s)	195, 357
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	269, 340
AjiI	CACGTC	1 cut(s)	230
AluBI	AGCT	6 cut(s)	10, 32, 91, 193, 214, 350
AluI	AGCT	6 cut(s)	10, 32, 91, 193, 214, 350
Alw26I	GTCTC	2 cut(s)	202, 220
AoxI	GGCC	2 cut(s)	105, 246
ApeKI	GCWGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	217, 280
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	180, 352
BcoDI	GTCTC	2 cut(s)	202, 220
BfaI	CTAG	1 cut(s)	394
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	2 cut(s)	316, 358
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	226, 307
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	107, 248
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	202, 220
BsmBI	CGTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	107, 248
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	36, 244
BspANI	GGCC	2 cut(s)	107, 248
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	292, 345
BstC8I	GCNNGC	3 cut(s)	34, 246, 282
BstDEI	CTNAG	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	226, 307
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	202, 220
BstMBI	GATC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	107, 248
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	226, 307
Cac8I	GCNNGC	3 cut(s)	34, 246, 282
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	3 cut(s)	24, 77, 281
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	195, 357
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	3 cut(s)	27, 80, 284
FatI	CATG	3 cut(s)	23, 76, 280
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	2 cut(s)	233, 294
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	394
GluI	GCNGC	1 cut(s)	305
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	107, 248
Hin1II	CATG	3 cut(s)	27, 80, 284
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	2 cut(s)	217, 280
Hpy188I	TCNGA	2 cut(s)	298, 315
HpyAV	CCTTC	2 cut(s)	173, 196
HpyCH4III	ACNGT	2 cut(s)	292, 345
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	53, 280, 307
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	27, 80, 284
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	127, 148, 190
LpnPI	CCDG	5 cut(s)	18, 20, 77, 179, 368
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	2 cut(s)	316, 358
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	300
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	129, 188, 374, 377
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	89, 141, 228, 313, 321
Mph1103I	ATGCAT	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	27, 80, 284
NlaIV	GGNNCC	1 cut(s)	129
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	316, 358
SphI	GCATGC	1 cut(s)	284
SsiI	CCGC	2 cut(s)	36, 244
SspMI	CTAG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	292, 345
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	12, 161
TfiI	GAWTC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	255
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.