Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

59257351 .. 59258357

Gene Structure 1007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCCAAGAATGGAGCTCTCTTGTTTTCTTGTGCTATCCCCATTCTCATACCAGCTATGAGCTTCTTCATGTCCAATCCATCCTCAACCTCTGCTCCCAAGGCCAACTCTCCCAAGCCCGTCTTCTCCCTCGACCTCTTATTCCGAAAAAGGATTCGCTTGCCCACCAAGACTCTCGCTTTTCTACTGCAGCACTGTGGAGACGCTCGGTCCCTTAGAGAAGGCGAATGGGTTCACTTGTACTTGAGGCTCACCGGATTCAAACGCCCACCTTTGCTTTTGGCAAACCATTTGATTGGGATGTACTTCAAATGCGGCGATGAGATGAGGAATCTGAAGGAGGCCAGGAGCTTGTTTGAGAAAATGCCTGAGAGGGATGTTGGGTCCTGGAACACCGTGGTGATTGGTTATGCCCACAATGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGATTTGCGGAGATCGTCGGTTGGGTTTACTGAGTTTAGTTTTGCGGGTGTTTTAACTTTTAACTGTGTGTGTGAAGATCAGGGAATGGGAGCTCATGGGCAGGTTTTGGTTGCTTGGTTTTTGTCAAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAAGTGTGGGGAGATTGTAGATGCTAGGAGATTGTTCGATGAGATGGCTGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGTGAGTTGTTTGATCGGATGCCTGAGAAGAACCTGTTGTCATGGACATCTATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAGTCAGGCCTGATCAGTTTACGTTTGGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

309

Amino Acids

34.38

Weight (kDa)

8.3

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	228 - 256	2.3e-07	PPR repeat
PPR_2	PF13041	256 - 303	1.7e-09	PPR repeat family
PPR	PF01535	259 - 284	5.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AciI	CCGC	3 cut(s)	315, 460, 497
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	242, 305
AfeI	AGCGCT	1 cut(s)	828
AfiI	CCNNNNNNNGG	3 cut(s)	420, 421, 624
AgsI	TTSAA	3 cut(s)	262, 310, 860
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	344, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	7 cut(s)	17, 56, 63, 351, 545, 734, 917
AluI	AGCT	7 cut(s)	17, 56, 63, 351, 545, 734, 917
Alw21I	GWGCWC	2 cut(s)	19, 547
Alw26I	GTCTC	1 cut(s)	195
Aor51HI	AGCGCT	1 cut(s)	828
AoxI	GGCC	4 cut(s)	3, 102, 342, 866
ApeKI	GCWGC	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	3 cut(s)	210, 384, 687
AsuHPI	GGTGA	3 cut(s)	244, 412, 731
AvaII	GGWCC	3 cut(s)	210, 384, 687
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	19, 547
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	19, 547
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	88, 655
BciT130I	CCWGG	2 cut(s)	346, 388
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	4 cut(s)	642, 735, 804, 909
BfmI	CTRYAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	191, 316
BlsI	GCNGC	2 cut(s)	192, 317
Bme1390I	CCNGG	2 cut(s)	346, 388
Bme18I	GGWCC	3 cut(s)	210, 384, 687
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	210, 384, 687
BmiI	GGNNCC	2 cut(s)	212, 385
BmrFI	CCNGG	2 cut(s)	346, 388
BmsI	GCATC	4 cut(s)	598, 628, 744, 840
BpiI	GAAGAC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	99, 396
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 421, 624
Bse1I	ACTGG	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	346, 388
BseDI	CCNNGG	2 cut(s)	99, 396
BseGI	GGATG	6 cut(s)	80, 306, 382, 613, 679, 759
BseLI	CCNNNNNNNGG	3 cut(s)	420, 421, 624
BseMII	CTCAG	3 cut(s)	360, 474, 750
BseNI	ACTGG	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	4 cut(s)	5, 104, 344, 868
BsiHKAI	GWGCWC	2 cut(s)	19, 547
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	420, 421, 624
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	4 cut(s)	5, 104, 344, 868
Bsp1286I	GDGCHC	2 cut(s)	19, 547
Bsp143I	GATC	4 cut(s)	464, 529, 748, 871
BspACI	CCGC	3 cut(s)	315, 460, 497
BspANI	GGCC	4 cut(s)	5, 104, 344, 868
BspCNI	CTCAG	3 cut(s)	361, 475, 751
BspLI	GGNNCC	2 cut(s)	212, 385
BspMAI	CTGCAG	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	699
BssECI	CCNNGG	2 cut(s)	99, 396
BssMI	GATC	4 cut(s)	464, 529, 748, 871
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	346, 388
Bst4CI	ACNGT	3 cut(s)	197, 397, 518
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	161, 831
BstDEI	CTNAG	4 cut(s)	215, 369, 483, 759
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	6 cut(s)	80, 306, 382, 613, 679, 759
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	4 cut(s)	467, 532, 751, 874
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	464, 529, 748, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 826, 839, 914
BstNI	CCWGG	2 cut(s)	346, 388
BstSCI	CCNGG	2 cut(s)	344, 386
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	5, 104, 344, 868
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	6 cut(s)	80, 306, 382, 613, 679, 759
BtsIMutI	CAGTG	2 cut(s)	193, 692
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	2 cut(s)	161, 831
CfoI	GCGC	1 cut(s)	829
Cfr13I	GGNCC	3 cut(s)	210, 384, 687
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	241, 304
CviAII	CATG	4 cut(s)	70, 548, 777, 821
CviQI	GTAC	2 cut(s)	241, 304
DdeI	CTNAG	4 cut(s)	215, 369, 483, 759
DpnI	GATC	4 cut(s)	466, 531, 750, 873
DpnII	GATC	4 cut(s)	464, 529, 748, 871
DriI	GACNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Ecl136II	GAGCTC	2 cut(s)	17, 545
Eco130I	CCWWGG	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	868
Eco24I	GRGCYC	2 cut(s)	19, 547
Eco47I	GGWCC	3 cut(s)	210, 384, 687
Eco47III	AGCGCT	1 cut(s)	828
Eco53kI	GAGCTC	2 cut(s)	17, 545
Eco57I	CTGAAG	1 cut(s)	356
EcoICRI	GAGCTC	2 cut(s)	17, 545
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	344, 386
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	2 cut(s)	19, 547
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	4 cut(s)	73, 551, 780, 824
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	69, 547, 776, 820
FauI	CCCGC	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	2 cut(s)	191, 316
FokI	GGATG	6 cut(s)	67, 313, 389, 620, 686, 766
FriOI	GRGCYC	2 cut(s)	19, 547
Fsp4HI	GCNGC	2 cut(s)	191, 316
FspBI	CTAG	4 cut(s)	642, 735, 804, 909
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	2 cut(s)	191, 316
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	4 cut(s)	5, 104, 344, 868
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	4 cut(s)	73, 551, 780, 824
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HinfI	GANTC	4 cut(s)	154, 172, 258, 331
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	244, 412, 731
Hpy166II	GTNNAC	3 cut(s)	235, 480, 879
Hpy188I	TCNGA	3 cut(s)	146, 336, 753
Hpy188III	TCNNGA	1 cut(s)	702
Hpy8I	GTNNAC	3 cut(s)	235, 480, 879
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	2 cut(s)	215, 331
HpyCH4III	ACNGT	3 cut(s)	197, 397, 518
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	3 cut(s)	190, 833, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 826, 839, 914
HpyF3I	CTNAG	4 cut(s)	215, 369, 483, 759
HpySE526I	ACGT	1 cut(s)	881
Hsp92II	CATG	4 cut(s)	73, 551, 780, 824
HspAI	GCGC	1 cut(s)	827
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	4 cut(s)	464, 529, 748, 871
LmnI	GCTCC	4 cut(s)	14, 100, 348, 542
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	4 cut(s)	598, 628, 744, 840
MaeI	CTAG	4 cut(s)	642, 735, 804, 909
MaeII	ACGT	1 cut(s)	881
MalI	GATC	4 cut(s)	466, 531, 750, 873
MboI	GATC	4 cut(s)	464, 529, 748, 871
MboII	GAAGA	4 cut(s)	58, 115, 539, 775
MhlI	GDGCHC	2 cut(s)	19, 547
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	166
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	506, 513
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	346, 388
MvaI	CCWGG	2 cut(s)	346, 388
MwoI	GCNNNNNNNGC	4 cut(s)	101, 826, 839, 914
NdeII	GATC	4 cut(s)	464, 529, 748, 871
NlaIII	CATG	4 cut(s)	73, 551, 780, 824
NlaIV	GGNNCC	2 cut(s)	212, 385
OliI	CACNNNNGTG	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	154, 258, 331
PfoI	TCCNGGA	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	192, 317
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	384
Psp124BI	GAGCTC	2 cut(s)	19, 547
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	344, 386
PspGI	CCWGG	2 cut(s)	344, 386
PspN4I	GGNNCC	2 cut(s)	212, 385
PspPI	GGNCC	3 cut(s)	210, 384, 687
PspPPI	RGGWCCY	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	242, 305
RsaNI	GTAC	2 cut(s)	241, 304
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	2 cut(s)	19, 547
SaqAI	TTAA	2 cut(s)	506, 513
SatI	GCNGC	2 cut(s)	191, 316
Sau3AI	GATC	4 cut(s)	464, 529, 748, 871
Sau96I	GGNCC	3 cut(s)	210, 384, 687
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	346, 388
SduI	GDGCHC	2 cut(s)	19, 547
SfaNI	GCATC	4 cut(s)	598, 628, 744, 840
SfcI	CTRYAG	1 cut(s)	188
SinI	GGWCC	3 cut(s)	210, 384, 687
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	868
SsiI	CCGC	3 cut(s)	315, 460, 497
SspMI	CTAG	4 cut(s)	642, 735, 804, 909
SstI	GAGCTC	2 cut(s)	19, 547
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	2 cut(s)	344, 386
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	197, 397, 518
TaiI	ACGT	1 cut(s)	884
TaqI	TCGA	3 cut(s)	132, 593, 654
TaqII	GACCGA	1 cut(s)	198
TatI	WGTACW	2 cut(s)	240, 303
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	154, 258, 331
Tru1I	TTAA	2 cut(s)	506, 513
Tru9I	TTAA	2 cut(s)	506, 513
TscAI	CASTG	2 cut(s)	200, 699
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	58, 740, 837
TspRI	CASTG	2 cut(s)	200, 699
VpaK11BI	GGWCC	3 cut(s)	210, 384, 687
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	4 cut(s)	642, 735, 804, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.