Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008902.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

2844 .. 3836

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008902.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggcagatgccaggagattgttctatgagatgactgtgagggatgttcttgcttggaccacactggtttcgagatatgccaaatggggtgatatgaaatcagctagtgagttgtttgatcggatgcctgagaagaacccggtgtcgtggacatcaatgatttcggggtatgctaggaatggattggggcatgaagtgcttgcattgtttgcagagatgatgctgtttcaagtcaggcctgatcagtttacctttagtagttgcctttgtgcttgtgctagtatagcttcgcttaagcatggcaaacaaattcatgcctttttagtaagaagtaatttaagacccaacacgattgttgtgagttctcttatcgacatgtattccaaatgtggcaatttgggggccggaaggcaggtattcaagctcacgggtgacaagcaagacactgtgttatggaacacaatgatgtctgccttagcacagcatggacatggtacagagacattgcagatgtttgaaaacatggtcagttcaggtgtaaagccggttacgaccacatttgttgtcattctcaatgcttgtagtcattctggtctagtgcaggaagggcgttggcttttcaagtccatgactgatgattatggcattgttcctcatgaggaacattatgcatgcttaattgatctcttgggtcgagctggatgttttgatgagttgatgaaccagctagaaaatatgccatgtaaagctggcggtcaagtttggaatgcattacttggtgtttgtagaatccatggaaatacagagctgggaagaaaagtggctgaacaccttattgagttggagcctcaaccttctgctccctatgttttgctttcgagcatatatgctgaagaaggtagatgggagctggtagagaaggtgagatggcttatggatgagagacatgtgaggaaagagcgagccattagttgggctagaagttcaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

330

Amino Acids

37.2

Weight (kDa)

7.15

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	972
AciI	CCGC	1 cut(s)	753
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	972
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	2 cut(s)	375, 946
AgsI	TTSAA	5 cut(s)	230, 421, 518, 622, 987
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	8 cut(s)	104, 287, 424, 698, 727, 749, 808, 910
AluI	AGCT	8 cut(s)	104, 287, 424, 698, 727, 749, 808, 910
Alw26I	GTCTC	2 cut(s)	494, 937
AoxI	GGCC	2 cut(s)	236, 402
ApoI	RAATTY	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	57, 402
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	101, 443, 934
AvaII	GGWCC	1 cut(s)	57
BccI	CCATC	2 cut(s)	897, 921
BciT130I	CCWGG	1 cut(s)	13
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	494, 937
BfaI	CTAG	6 cut(s)	105, 174, 279, 596, 728, 978
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	13, 140
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 402
BmiI	GGNNCC	2 cut(s)	403, 846
BmrFI	CCNGG	2 cut(s)	13, 140
BmsI	GCATC	2 cut(s)	114, 210
Bpu10I	CCTNAGC	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	1 cut(s)	972
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	793
BseGI	GGATG	4 cut(s)	49, 129, 707, 943
BseLI	CCNNNNNNNGG	1 cut(s)	972
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	808
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	2 cut(s)	238, 404
BsiSI	CCGG	3 cut(s)	140, 405, 545
BslI	CCNNNNNNNGG	1 cut(s)	972
BsmAI	GTCTC	2 cut(s)	494, 937
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	2 cut(s)	238, 404
Bsp143I	GATC	3 cut(s)	118, 241, 682
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	1 cut(s)	753
BspANI	GGCC	2 cut(s)	238, 404
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	403, 846
BspMI	ACCTGC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	793
BssMI	GATC	3 cut(s)	118, 241, 682
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	37, 448
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	2 cut(s)	196, 209
BstC8I	GCNNGC	4 cut(s)	201, 673, 751, 963
BstDEI	CTNAG	2 cut(s)	129, 475
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	4 cut(s)	49, 129, 707, 943
BstKTI	GATC	3 cut(s)	121, 244, 685
BstMAI	GTCTC	2 cut(s)	494, 937
BstMBI	GATC	3 cut(s)	118, 241, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 209, 284, 607
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	3 cut(s)	379, 675, 950
BstSCI	CCNGG	2 cut(s)	11, 138
BsuRI	GGCC	2 cut(s)	238, 404
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	4 cut(s)	49, 129, 707, 943
BtsIMutI	CAGTG	2 cut(s)	62, 444
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	4 cut(s)	201, 673, 751, 963
CciI	TCATGA	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	57, 402
Csp6I	GTAC	1 cut(s)	495
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	2 cut(s)	129, 475
DpnI	GATC	3 cut(s)	120, 243, 684
DpnII	GATC	3 cut(s)	118, 241, 682
Eco130I	CCWWGG	1 cut(s)	793
Eco147I	AGGCCT	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	912
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	793
EcoT22I	ATGCAT	2 cut(s)	673, 772
ErhI	CCWWGG	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	4 cut(s)	56, 136, 714, 950
FspBI	CTAG	6 cut(s)	105, 174, 279, 596, 728, 978
GsaI	CCCAGC	1 cut(s)	812
HaeIII	GGCC	2 cut(s)	238, 404
HapII	CCGG	3 cut(s)	140, 405, 545
HinfI	GANTC	1 cut(s)	789
HpaII	CCGG	3 cut(s)	140, 405, 545
HphI	GGTGA	3 cut(s)	101, 443, 934
Hpy166II	GTNNAC	2 cut(s)	150, 249
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	72, 656
Hpy8I	GTNNAC	2 cut(s)	150, 249
HpyAV	CCTTC	5 cut(s)	402, 599, 864, 890, 913
HpyCH4III	ACNGT	2 cut(s)	37, 448
HpyCH4V	TGCA	6 cut(s)	203, 212, 508, 601, 671, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 209, 284, 607
HpyF3I	CTNAG	2 cut(s)	129, 475
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	118, 241, 682
LmnI	GCTCC	3 cut(s)	844, 865, 907
LweI	GCATC	2 cut(s)	114, 210
MaeI	CTAG	6 cut(s)	105, 174, 279, 596, 728, 978
MaeIII	GTNAC	2 cut(s)	431, 547
MalI	GATC	3 cut(s)	120, 243, 684
MboI	GATC	3 cut(s)	118, 241, 682
MboII	GAAGA	3 cut(s)	145, 825, 905
MluCI	AATT	4 cut(s)	309, 334, 394, 678
MmeI	TCCRAC	1 cut(s)	822
MnlI	CCTC	5 cut(s)	33, 652, 663, 858, 945
Mph1103I	ATGCAT	2 cut(s)	673, 772
MseI	TTAA	3 cut(s)	294, 338, 677
MslI	CAYNNNNRTG	2 cut(s)	464, 489
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	3 cut(s)	140, 405, 545
MspR9I	CCNGG	2 cut(s)	13, 140
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	4 cut(s)	196, 209, 284, 607
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	793
NdeII	GATC	3 cut(s)	118, 241, 682
NlaIV	GGNNCC	2 cut(s)	403, 846
NmuCI	GTSAC	1 cut(s)	431
NsiI	ATGCAT	2 cut(s)	673, 772
NspI	RCATGY	3 cut(s)	379, 675, 950
PaeI	GCATGC	1 cut(s)	675
PagI	TCATGA	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	238
PciI	ACATGT	2 cut(s)	375, 946
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	789
PflMI	CCANNNNNTGG	1 cut(s)	972
PscI	ACATGT	2 cut(s)	375, 946
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	403, 846
PspPI	GGNCC	2 cut(s)	57, 402
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
RseI	CAYNNNNRTG	2 cut(s)	464, 489
SaqAI	TTAA	3 cut(s)	294, 338, 677
Sau3AI	GATC	3 cut(s)	118, 241, 682
Sau96I	GGNCC	2 cut(s)	57, 402
ScrFI	CCNGG	2 cut(s)	13, 140
SfaNI	GCATC	2 cut(s)	114, 210
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	464, 489
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	4 cut(s)	309, 334, 394, 678
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	753
SspMI	CTAG	6 cut(s)	105, 174, 279, 596, 728, 978
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	11, 138
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	2 cut(s)	37, 448
TaqI	TCGA	4 cut(s)	71, 372, 694, 878
TasI	AATT	4 cut(s)	309, 334, 394, 678
TfiI	GAWTC	1 cut(s)	789
Tru1I	TTAA	3 cut(s)	294, 338, 677
Tru9I	TTAA	3 cut(s)	294, 338, 677
TscAI	CASTG	2 cut(s)	69, 451
TseFI	GTSAC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	4 cut(s)	110, 207, 302, 734
TspRI	CASTG	2 cut(s)	69, 451
Van91I	CCANNNNNTGG	1 cut(s)	972
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	3 cut(s)	379, 675, 950
XspI	CTAG	6 cut(s)	105, 174, 279, 596, 728, 978
Zsp2I	ATGCAT	2 cut(s)	673, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.