Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

13699436 .. 13701264

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGAAAAATGGGTTGAGCATGCAAACAACTTGTTTTAGAGAAATTACAAGAAAGTTGCAAAATTCTTCCAAAAAGCACTCAAACCCACTGCAATTTGACAAAAATTTGCGAACTATCCAATTGAATTGTTGTATGACTTGTCCCCACCAACAACTCGTAAACTCGATTGAAAACACCGTCACTGCCAATTCAATCACCCACCGATCCAACCGCCGCCGCCAACCCACTTTAAATGAAGACTTCAATCCAAACCTCTCATGGTTTCACTCTGAAATGCCCTCTTTCTCTTCCCCACCTCTCCCTCCTCTCACCAAGCCTAGCAAACGCCTCGCCGGCACCAAGCGTCCCTGCGTCGTCCAGTCTCTTCTTAAGCTCTGCTCGCAGGGCCACCTCTCGCAAGCCCTCTCCTCCCTCGACCTTCTAGTCCAAAGGGGTATCCGTTTACCCGCCAAGACTCTCGCTTTCCTCCTGCAACAGTGCAGCGCCGCCAGGTCCCTCCGAGAAGGCAAATGGGTTCACATCCATTTGAAGCTCACTGGATTCAAGCACCCCTCTACGTTTTTAGCAAACCATTTGATAAATATGTACTTTAAATGTGCCGATGATGTAGAAGCCCGCAGGGTGTTTGATAAAATGTCAGTGAGGAATTTGTACTCTTGGAACAATATGCTTTCTGGGTATGCTAAGATGAGGAAGTTGAGTGAGGCCAGGAGTTTGTTTGAAAAAATGCCGGAAAAGGACGTCGTGTCGTGGAACACCATGGTCATTGGTTGTGCTCAGAGTGGAGTATGTGATGAGGCTTTGAGGTTTTATAGAGAGTTAAGGAGATTGTCAATTGGTTTCAATGAGTTTAGTTTTGCGGGTGTTTTGACTGCTTGTGTGAAGTTGAAGGAATTGGGCCTTACTAGACAAGTTCATGGGCAGGTTTTGGTTGCTGGGTTTTTGTCAAATGTTGTGCTTTCTAGTTCGGTTGTTGATGCTTATGCCAAGTGTGGGGAGATGGGAGATGCGAGGAAAGTGTTTGATAGCATGCCTGTGAAGGATGTTCTTGTTTGGACAACATTGGTTTCGGGGTATGCGAAATTTGGTGATATGGAATCAGCTAGTGAATTTTTCAATCGGATGCCCGAGAAGAACCCTATATCGTGGACAGCTGTGATTTCCGGCTATGCTAGAAATGGTTTGGGGCATGAAGCCCTTGCATTGTTTACAGAGATGATGATGTATCAAGTTAGACCTGATCAATTTACATTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCACTTAAGCATGGTAAACAAGTACATGCATCTTTAATACGAAGTAATTTTAGACCCAACACAATTGTTGTGAGCTCTCTTATCGACATGTATTCAAAATGTGGGGATTTGGGGGCAGGAAGACGAGTTTTCAAGCTCATGGGTGATAAGCAAGATACTGTATTATGGAACACATTGATATCTGCCTTAGCGCAGCATGGTAACGGTATAGAGGCAATGGGATTGTTTGAGGAGATGGTCAGATCAGGAGTGAAGCCAGATAGGACTACCTTTGTGGTCATTCTCAATGCATGTAGTCATTCTGGTCTAGTGCAGGAAGGGCTTAGTTTTTTCCAGTCCATGACTAGTGATCGATCGCATTTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

552

Amino Acids

61.69

Weight (kDa)

9.46

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	218 - 247	9.5e-08	PPR repeat
PPR_2	PF13041	246 - 295	6.2e-06	PPR repeat family
PPR	PF01535	351 - 379	1.5e-06	PPR repeat
PPR_2	PF13041	379 - 426	2.7e-10	PPR repeat family
PPR	PF01535	381 - 407	6.7e-07	PPR repeat
PPR_3	PF13812	480 - 527	2.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	481 - 528	1.8e-13	PPR repeat family
PPR	PF01535	483 - 513	4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AatII	GACGTC	1 cut(s)	744
Acc36I	ACCTGC	1 cut(s)	913
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	7 cut(s)	211, 214, 217, 447, 486, 616, 860
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	5 cut(s)	61, 103, 646, 1082, 1109
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	3 cut(s)	587, 653, 1311
AfiI	CCNNNNNNNGG	1 cut(s)	993
AflII	CTTAAG	2 cut(s)	368, 1292
AflIII	ACRYGT	1 cut(s)	1374
AhdI	GACNNNNNGTC	1 cut(s)	745
AhlI	ACTAGT	1 cut(s)	1631
AjnI	CCWGG	2 cut(s)	488, 707
AluBI	AGCT	7 cut(s)	373, 532, 1103, 1154, 1286, 1362, 1423
AluI	AGCT	7 cut(s)	373, 532, 1103, 1154, 1286, 1362, 1423
Alw21I	GWGCWC	2 cut(s)	778, 1364
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	1127
AoxI	GGCC	3 cut(s)	385, 705, 898
ApeKI	GCWGC	2 cut(s)	480, 1480
ApoI	RAATTY	5 cut(s)	61, 103, 646, 1082, 1109
AspLEI	GCGC	2 cut(s)	485, 1480
AspS9I	GGNCC	3 cut(s)	385, 492, 898
AsuHPI	GGTGA	4 cut(s)	187, 301, 1100, 1442
AvaI	CYCGRG	1 cut(s)	1127
AvaII	GGWCC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	1364
BbsI	GAAGAC	2 cut(s)	243, 1414
Bbv12I	GWGCWC	2 cut(s)	778, 1364
BbvI	GCAGC	2 cut(s)	492, 1492
BccI	CCATC	2 cut(s)	994, 1516
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	490, 709
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	1240
BcoDI	GTCTC	1 cut(s)	366
BcuI	ACTAGT	1 cut(s)	1631
BfaI	CTAG	9 cut(s)	318, 422, 906, 963, 1104, 1173, 1278, 1595, 1632
BfoI	RGCGCY	1 cut(s)	486
BfrI	CTTAAG	2 cut(s)	368, 1292
BfuAI	ACCTGC	1 cut(s)	913
BfuI	GTATCC	1 cut(s)	446
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	5 cut(s)	214, 217, 481, 486, 1481
BlsI	GCNGC	5 cut(s)	215, 218, 482, 487, 1482
Bme1390I	CCNGG	2 cut(s)	490, 709
Bme18I	GGWCC	1 cut(s)	492
BmeRI	GACNNNNNGTC	1 cut(s)	745
BmeT110I	CYCGRG	1 cut(s)	1127
BmgT120I	GGNCC	3 cut(s)	385, 492, 898
BmiI	GGNNCC	2 cut(s)	337, 494
BmrFI	CCNGG	2 cut(s)	490, 709
BmsI	GCATC	4 cut(s)	967, 997, 1113, 1325
BpiI	GAAGAC	2 cut(s)	243, 1414
Bpu10I	CCTNAGC	1 cut(s)	1474
Bsa29I	ATCGAT	1 cut(s)	1639
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	1 cut(s)	993
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	3 cut(s)	358, 541, 1621
Bse3DI	GCAATG	1 cut(s)	1509
BseBI	CCWGG	2 cut(s)	490, 709
BseCI	ATCGAT	1 cut(s)	1639
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	3 cut(s)	519, 1048, 1128
BseLI	CCNNNNNNNGG	1 cut(s)	993
BseMI	GCAATG	1 cut(s)	1509
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	3 cut(s)	358, 541, 1621
BseRI	GAGGAG	3 cut(s)	294, 397, 1532
BseXI	GCAGC	2 cut(s)	492, 1492
BseYI	CCCAGC	1 cut(s)	935
BsgI	GTGCAG	2 cut(s)	499, 1619
Bsh1285I	CGRYCG	1 cut(s)	1643
BshFI	GGCC	3 cut(s)	387, 707, 900
BshNI	GGYRCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	1639
BsiEI	CGRYCG	1 cut(s)	1643
BsiHKAI	GWGCWC	2 cut(s)	778, 1364
BsiHKCI	CYCGRG	1 cut(s)	1127
BsiSI	CCGG	3 cut(s)	333, 731, 1164
BslFI	GGGAC	3 cut(s)	126, 330, 478
BslI	CCNNNNNNNGG	1 cut(s)	993
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	3 cut(s)	126, 330, 478
BsnI	GGCC	3 cut(s)	387, 707, 900
BsoBI	CYCGRG	1 cut(s)	1127
Bsp1286I	GDGCHC	2 cut(s)	778, 1364
Bsp143I	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	7 cut(s)	211, 214, 217, 447, 486, 616, 860
BspANI	GGCC	3 cut(s)	387, 707, 900
BspCNI	CTCAG	1 cut(s)	790
BspDI	ATCGAT	1 cut(s)	1639
BspLI	GGNNCC	2 cut(s)	337, 494
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	335
BspTI	CTTAAG	2 cut(s)	368, 1292
BsrDI	GCAATG	1 cut(s)	1509
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	358, 541, 1621
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	490, 709
Bst4CI	ACNGT	4 cut(s)	178, 477, 1447, 1493
Bst6I	CTCTTC	2 cut(s)	292, 369
BstACI	GRCGYC	1 cut(s)	741
BstAFI	CTTAAG	2 cut(s)	368, 1292
BstC8I	GCNNGC	6 cut(s)	20, 334, 380, 399, 616, 1031
BstDEI	CTNAG	4 cut(s)	684, 777, 1474, 1610
BstDSI	CCRYGG	1 cut(s)	759
BstF5I	GGATG	3 cut(s)	519, 1048, 1128
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	485, 1480
BstKTI	GATC	5 cut(s)	206, 1243, 1532, 1639, 1643
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
BstMCI	CGRYCG	1 cut(s)	1643
BstMWI	GCNNNNNNNGC	5 cut(s)	333, 379, 384, 1283, 1606
BstNI	CCWGG	2 cut(s)	490, 709
BstNSI	RCATGY	5 cut(s)	22, 1033, 1316, 1378, 1581
BstSCI	CCNGG	2 cut(s)	488, 707
BstV1I	GCAGC	2 cut(s)	492, 1492
BstV2I	GAAGAC	2 cut(s)	243, 1414
Bsu15I	ATCGAT	1 cut(s)	1639
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	3 cut(s)	387, 707, 900
BsuTUI	ATCGAT	1 cut(s)	1639
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	519, 1048, 1128
BtsI	GCAGTG	2 cut(s)	86, 180
BtsIMutI	CAGTG	5 cut(s)	86, 180, 482, 534, 645
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	6 cut(s)	20, 334, 380, 399, 616, 1031
CfoI	GCGC	2 cut(s)	485, 1480
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	385, 492, 898
ClaI	ATCGAT	1 cut(s)	1639
CseI	GACGC	2 cut(s)	332, 340
Csp6I	GTAC	3 cut(s)	586, 652, 1310
CviQI	GTAC	3 cut(s)	586, 652, 1310
DdeI	CTNAG	4 cut(s)	684, 777, 1474, 1610
DpnI	GATC	5 cut(s)	205, 1242, 1531, 1638, 1642
DpnII	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
DraI	TTTAAA	2 cut(s)	231, 592
DrdI	GACNNNNNNGTC	1 cut(s)	422
DriI	GACNNNNNGTC	1 cut(s)	745
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	292, 369
Eam1105I	GACNNNNNGTC	1 cut(s)	745
EarI	CTCTTC	2 cut(s)	292, 369
Ecl136II	GAGCTC	1 cut(s)	1362
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	1364
Eco32I	GATATC	1 cut(s)	1467
Eco47I	GGWCC	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	1362
Eco88I	CYCGRG	1 cut(s)	1127
EcoICRI	GAGCTC	1 cut(s)	1362
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	488, 707
EcoRV	GATATC	1 cut(s)	1467
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	2 cut(s)	1318, 1579
EcoT38I	GRGCYC	1 cut(s)	1364
ErhI	CCWWGG	1 cut(s)	759
FaqI	GGGAC	3 cut(s)	126, 330, 478
FauI	CCCGC	3 cut(s)	454, 623, 853
FbaI	TGATCA	1 cut(s)	1240
Fnu4HI	GCNGC	5 cut(s)	214, 217, 481, 486, 1481
FokI	GGATG	3 cut(s)	506, 1055, 1135
FriOI	GRGCYC	1 cut(s)	1364
Fsp4HI	GCNGC	5 cut(s)	214, 217, 481, 486, 1481
FspBI	CTAG	9 cut(s)	318, 422, 906, 963, 1104, 1173, 1278, 1595, 1632
GlaI	GCGC	2 cut(s)	484, 1479
GluI	GCNGC	5 cut(s)	214, 217, 481, 486, 1481
GsaI	CCCAGC	1 cut(s)	939
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	387, 707, 900
HapII	CCGG	3 cut(s)	333, 731, 1164
HgaI	GACGC	2 cut(s)	332, 340
HhaI	GCGC	2 cut(s)	485, 1480
Hin1I	GRCGYC	1 cut(s)	741
Hin6I	GCGC	2 cut(s)	483, 1478
HinP1I	GCGC	2 cut(s)	483, 1478
HinfI	GANTC	3 cut(s)	454, 540, 1097
HpaII	CCGG	3 cut(s)	333, 731, 1164
HphI	GGTGA	4 cut(s)	187, 301, 1100, 1442
Hpy166II	GTNNAC	6 cut(s)	160, 443, 517, 1149, 1209, 1304
Hpy188I	TCNGA	5 cut(s)	271, 500, 780, 1122, 1529
Hpy188III	TCNNGA	2 cut(s)	1533, 1653
Hpy8I	GTNNAC	6 cut(s)	160, 443, 517, 1149, 1209, 1304
Hpy99I	CGWCG	2 cut(s)	356, 746
HpyAV	CCTTC	5 cut(s)	428, 497, 883, 1033, 1598
HpyCH4III	ACNGT	4 cut(s)	178, 477, 1447, 1493
HpyCH4IV	ACGT	2 cut(s)	557, 741
HpyCH4V	TGCA	9 cut(s)	22, 58, 91, 472, 480, 1202, 1316, 1577, 1600
HpyF10VI	GCNNNNNNNGC	5 cut(s)	333, 379, 384, 1283, 1606
HpyF3I	CTNAG	4 cut(s)	684, 777, 1474, 1610
HpySE526I	ACGT	2 cut(s)	557, 741
Hsp92I	GRCGYC	1 cut(s)	741
HspAI	GCGC	2 cut(s)	483, 1478
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	1240
Kzo9I	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
Lsp1109I	GCAGC	2 cut(s)	492, 1492
LweI	GCATC	4 cut(s)	967, 997, 1113, 1325
MaeI	CTAG	9 cut(s)	318, 422, 906, 963, 1104, 1173, 1278, 1595, 1632
MaeII	ACGT	2 cut(s)	557, 741
MaeIII	GTNAC	2 cut(s)	178, 1487
MalI	GATC	5 cut(s)	205, 1242, 1531, 1638, 1642
MboI	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
MboII	GAAGA	6 cut(s)	57, 248, 279, 356, 1144, 1419
MfeI	CAATTG	3 cut(s)	119, 834, 1350
MhlI	GDGCHC	2 cut(s)	778, 1364
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	231
Mph1103I	ATGCAT	2 cut(s)	1318, 1579
MroNI	GCCGGC	1 cut(s)	332
MseI	TTAA	6 cut(s)	230, 369, 591, 821, 1293, 1322
MslI	CAYNNNNRTG	1 cut(s)	1034
MspA1I	CMGCKG	1 cut(s)	1154
MspCI	CTTAAG	2 cut(s)	368, 1292
MspI	CCGG	3 cut(s)	333, 731, 1164
MspR9I	CCNGG	2 cut(s)	490, 709
MunI	CAATTG	3 cut(s)	119, 834, 1350
MvaI	CCWGG	2 cut(s)	490, 709
MwoI	GCNNNNNNNGC	5 cut(s)	333, 379, 384, 1283, 1606
NaeI	GCCGGC	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	759
NdeII	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
NgoMIV	GCCGGC	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	337, 494
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	2 cut(s)	1318, 1579
NspI	RCATGY	5 cut(s)	22, 1033, 1316, 1378, 1581
PaeI	GCATGC	2 cut(s)	22, 1033
PciI	ACATGT	1 cut(s)	1374
PcsI	WCGNNNNNNNCGW	1 cut(s)	1076
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	540, 1097
PkrI	GCNGC	5 cut(s)	215, 218, 482, 487, 1482
Ple19I	CGATCG	1 cut(s)	1643
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	492
PscI	ACATGT	1 cut(s)	1374
Psp124BI	GAGCTC	1 cut(s)	1364
Psp5II	RGGWCCY	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	488, 707
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	2 cut(s)	488, 707
PspN4I	GGNNCC	2 cut(s)	337, 494
PspPI	GGNCC	3 cut(s)	385, 492, 898
PspPPI	RGGWCCY	1 cut(s)	492
PvuI	CGATCG	1 cut(s)	1643
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	3 cut(s)	587, 653, 1311
RsaNI	GTAC	3 cut(s)	586, 652, 1310
RseI	CAYNNNNRTG	1 cut(s)	1034
SacI	GAGCTC	1 cut(s)	1364
SaqAI	TTAA	6 cut(s)	230, 369, 591, 821, 1293, 1322
SatI	GCNGC	5 cut(s)	214, 217, 481, 486, 1481
Sau3AI	GATC	5 cut(s)	203, 1240, 1529, 1636, 1640
Sau96I	GGNCC	3 cut(s)	385, 492, 898
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	490, 709
SduI	GDGCHC	2 cut(s)	778, 1364
SfaNI	GCATC	4 cut(s)	967, 997, 1113, 1325
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	1034
SmlI	CTYRAG	2 cut(s)	368, 1292
SmoI	CTYRAG	2 cut(s)	368, 1292
SpeI	ACTAGT	1 cut(s)	1631
SphI	GCATGC	2 cut(s)	22, 1033
SsiI	CCGC	7 cut(s)	211, 214, 217, 447, 486, 616, 860
SspMI	CTAG	9 cut(s)	318, 422, 906, 963, 1104, 1173, 1278, 1595, 1632
SstI	GAGCTC	1 cut(s)	1364
StyD4I	CCNGG	2 cut(s)	488, 707
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	4 cut(s)	178, 477, 1447, 1493
TaiI	ACGT	2 cut(s)	560, 744
TaqI	TCGA	4 cut(s)	164, 414, 1371, 1639
TatI	WGTACW	3 cut(s)	585, 651, 1309
TauI	GCSGC	3 cut(s)	216, 219, 488
TfiI	GAWTC	2 cut(s)	540, 1097
Tru1I	TTAA	6 cut(s)	230, 369, 591, 821, 1293, 1322
Tru9I	TTAA	6 cut(s)	230, 369, 591, 821, 1293, 1322
TscAI	CASTG	5 cut(s)	93, 187, 482, 541, 645
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	480, 1480
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	17, 249, 905, 1206
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	5 cut(s)	93, 187, 482, 541, 645
Vha464I	CTTAAG	2 cut(s)	368, 1292
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	5 cut(s)	61, 103, 646, 1082, 1109
XceI	RCATGY	5 cut(s)	22, 1033, 1316, 1378, 1581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XspI	CTAG	9 cut(s)	318, 422, 906, 963, 1104, 1173, 1278, 1595, 1632
ZraI	GACGTC	1 cut(s)	742
Zsp2I	ATGCAT	2 cut(s)	1318, 1579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.