Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000252.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

149265 .. 150483

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000252.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgtccaatccatcctcaacctctgctcccaaggccaaccaatccgtcttcttcctcgacctcttattccgaaaagggattcgcttgcccaccaagactctcgcttttctactgcagcactgtggagacgctcggtccctcagagaaggcaaatgggttcacttgtatttgtggctcaccggattcaaacgcccacctttgcttttggctaaccatttgattgggatgtacttcaaatgcggcgatgaggttgatgcacgcaaggtgtttgataaaatgtttgtgagaaatttgtactcgtggaacaatatgttgtctgggtatgtgaagatgaggaatctaaaggaggcccagagcttgtttgataaaatgcctgagagggatgttgtgtcctggaacaccatggtgattcgttatgcccagaatggggattatgagggaatgggcttgtttttgtcgaatgtggtgctttcgagttcggtggtggatgcttataccaagtgtggggagatggcggatgccaggagattgttcgatgagatggctgtgagggatgttcttgcttggaccacactggtttcgggatatgccaaatggggtgatatgaaatcagctcgtgagttgtttgatcggatgcctgagaagaacccggtgtcatggacatccatgatttcggggtatgctaggaatggattggggcatgaagcgcttgcattgtttgcagagatgatgctgtttcaagtcaggcctgatcagtttacctttagtagttgcctttgtgcttgtgctagtatagcttggcttaagcatggtaaacaaattcatgcctctttaatacgaagtaatttaagacccaacacgattgttgtgagttctcttatcgacatgtattccaaatgcggcagtttgggggccggaaggcaggttttcaagctcatgggtgataagcaagacatcgtgttatggaacacaatgatgtctgccttagcacagcatggtcatggtatagaggcattgcagatgtttgaagacatgtcattctggtctagtgcaggaagggcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

354

Amino Acids

40.07

Weight (kDa)

9.16

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AciI	CCGC	3 cut(s)	240, 515, 900
AcsI	RAATTY	2 cut(s)	289, 819
AfaI	GTAC	2 cut(s)	230, 296
AfeI	AGCGCT	1 cut(s)	708
AfiI	CCNNNNNNNGG	3 cut(s)	426, 427, 504
AflII	CTTAAG	1 cut(s)	803
AflIII	ACRYGT	2 cut(s)	885, 1032
AgsI	TTSAA	5 cut(s)	187, 235, 740, 931, 1028
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	392, 521
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	4 cut(s)	357, 614, 797, 934
AluI	AGCT	4 cut(s)	357, 614, 797, 934
Alw26I	GTCTC	1 cut(s)	120
Aor51HI	AGCGCT	1 cut(s)	708
AoxI	GGCC	4 cut(s)	33, 348, 746, 912
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	289, 819
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	4 cut(s)	135, 349, 567, 912
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	169, 418, 611, 953
AvaII	GGWCC	2 cut(s)	135, 567
BauI	CACGAG	2 cut(s)	298, 615
BbsI	GAAGAC	2 cut(s)	40, 1035
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	3 cut(s)	19, 505, 535
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	2 cut(s)	394, 523
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	3 cut(s)	684, 789, 1047
BfmI	CTRYAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	710
BfrI	CTTAAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	913
BisI	GCNGC	3 cut(s)	116, 241, 901
BlsI	GCNGC	3 cut(s)	117, 242, 902
Bme1390I	CCNGG	3 cut(s)	394, 523, 650
Bme18I	GGWCC	2 cut(s)	135, 567
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	135, 349, 567, 912
BmiI	GGNNCC	2 cut(s)	137, 913
BmrFI	CCNGG	3 cut(s)	394, 523, 650
BmsI	GCATC	5 cut(s)	244, 478, 508, 624, 720
BpiI	GAAGAC	2 cut(s)	40, 1035
Bpu10I	CCTNAGC	1 cut(s)	985
BpuMI	CCSGG	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	30, 402
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	3 cut(s)	426, 427, 504
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	1013
BseBI	CCWGG	2 cut(s)	394, 523
BseDI	CCNNGG	2 cut(s)	30, 402
BseGI	GGATG	8 cut(s)	11, 231, 388, 493, 523, 559, 639, 662
BseLI	CCNNNNNNNGG	3 cut(s)	426, 427, 504
BseMI	GCAATG	1 cut(s)	1013
BseMII	CTCAG	3 cut(s)	154, 366, 630
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	4 cut(s)	35, 350, 748, 914
BsiSI	CCGG	3 cut(s)	180, 650, 915
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	426, 427, 504
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	4 cut(s)	35, 350, 748, 914
Bsp143I	GATC	2 cut(s)	628, 751
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	3 cut(s)	240, 515, 900
BspANI	GGCC	4 cut(s)	35, 350, 748, 914
BspCNI	CTCAG	3 cut(s)	153, 367, 631
BspLI	GGNNCC	2 cut(s)	137, 913
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	913
BspTI	CTTAAG	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	1013
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	30, 402
BssMI	GATC	2 cut(s)	628, 751
BssSI	CACGAG	2 cut(s)	298, 615
BssT1I	CCWWGG	2 cut(s)	30, 402
Bst2BI	CACGAG	2 cut(s)	298, 615
Bst2UI	CCWGG	2 cut(s)	394, 523
Bst4CI	ACNGT	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	86, 259, 711
BstDEI	CTNAG	4 cut(s)	140, 375, 639, 985
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	8 cut(s)	11, 231, 388, 493, 523, 559, 639, 662
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	2 cut(s)	631, 754
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	628, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 706, 719, 794, 1058
BstNI	CCWGG	2 cut(s)	394, 523
BstNSI	RCATGY	2 cut(s)	889, 1036
BstSCI	CCNGG	3 cut(s)	392, 521, 648
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	2 cut(s)	40, 1035
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	35, 350, 748, 914
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	8 cut(s)	11, 231, 388, 493, 523, 559, 639, 662
BtsIMutI	CAGTG	2 cut(s)	118, 572
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	3 cut(s)	86, 259, 711
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	4 cut(s)	135, 349, 567, 912
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	229, 295
CviQI	GTAC	2 cut(s)	229, 295
DdeI	CTNAG	4 cut(s)	140, 375, 639, 985
DpnI	GATC	2 cut(s)	630, 753
DpnII	GATC	2 cut(s)	628, 751
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	530
Eco130I	CCWWGG	2 cut(s)	30, 402
Eco147I	AGGCCT	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	135, 567
Eco47III	AGCGCT	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	392, 521
EcoT14I	CCWWGG	2 cut(s)	30, 402
ErhI	CCWWGG	2 cut(s)	30, 402
Esp3I	CGTCTC	1 cut(s)	120
FaqI	GGGAC	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	116, 241, 901
FokI	GGATG	7 cut(s)	238, 395, 500, 530, 566, 646, 649
Fsp4HI	GCNGC	3 cut(s)	116, 241, 901
FspBI	CTAG	3 cut(s)	684, 789, 1047
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	3 cut(s)	116, 241, 901
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	35, 350, 748, 914
HapII	CCGG	3 cut(s)	180, 650, 915
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	709
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HinfI	GANTC	5 cut(s)	79, 97, 183, 337, 409
HpaII	CCGG	3 cut(s)	180, 650, 915
HphI	GGTGA	4 cut(s)	169, 418, 611, 953
Hpy166II	GTNNAC	3 cut(s)	160, 759, 815
Hpy188I	TCNGA	3 cut(s)	71, 143, 633
Hpy188III	TCNNGA	2 cut(s)	582, 617
Hpy8I	GTNNAC	3 cut(s)	160, 759, 815
HpyAV	CCTTC	3 cut(s)	140, 912, 1050
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	6 cut(s)	115, 257, 713, 722, 1018, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 706, 719, 794, 1058
HpyF3I	CTNAG	4 cut(s)	140, 375, 639, 985
HspAI	GCGC	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	2 cut(s)	628, 751
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	5 cut(s)	244, 478, 508, 624, 720
MaeI	CTAG	3 cut(s)	684, 789, 1047
MalI	GATC	2 cut(s)	630, 753
MboI	GATC	2 cut(s)	628, 751
MboII	GAAGA	5 cut(s)	40, 43, 340, 655, 1040
MluCI	AATT	3 cut(s)	289, 819, 844
MlyI	GAGTC	1 cut(s)	91
MseI	TTAA	3 cut(s)	804, 833, 848
MslI	CAYNNNNRTG	3 cut(s)	404, 974, 999
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	3 cut(s)	180, 650, 915
MspR9I	CCNGG	3 cut(s)	394, 523, 650
MvaI	CCWGG	2 cut(s)	394, 523
MwoI	GCNNNNNNNGC	5 cut(s)	32, 706, 719, 794, 1058
NciI	CCSGG	1 cut(s)	650
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	628, 751
NlaIV	GGNNCC	2 cut(s)	137, 913
NspI	RCATGY	2 cut(s)	889, 1036
OliI	CACNNNNGTG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	748
PciI	ACATGT	2 cut(s)	885, 1032
PfeI	GAWTC	4 cut(s)	79, 183, 337, 409
PfoI	TCCNGGA	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	117, 242, 902
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PscI	ACATGT	2 cut(s)	885, 1032
Psp6I	CCWGG	2 cut(s)	392, 521
PspGI	CCWGG	2 cut(s)	392, 521
PspN4I	GGNNCC	2 cut(s)	137, 913
PspPI	GGNCC	4 cut(s)	135, 349, 567, 912
PstI	CTGCAG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	230, 296
RsaNI	GTAC	2 cut(s)	229, 295
RseI	CAYNNNNRTG	3 cut(s)	404, 974, 999
SaqAI	TTAA	3 cut(s)	804, 833, 848
SatI	GCNGC	3 cut(s)	116, 241, 901
Sau3AI	GATC	2 cut(s)	628, 751
Sau96I	GGNCC	4 cut(s)	135, 349, 567, 912
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	3 cut(s)	394, 523, 650
SfaNI	GCATC	5 cut(s)	244, 478, 508, 624, 720
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	135, 567
SmiMI	CAYNNNNRTG	3 cut(s)	404, 974, 999
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	3 cut(s)	289, 819, 844
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	3 cut(s)	240, 515, 900
SspMI	CTAG	3 cut(s)	684, 789, 1047
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	3 cut(s)	392, 521, 648
StyI	CCWWGG	2 cut(s)	30, 402
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	5 cut(s)	57, 458, 473, 534, 882
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	289, 819, 844
TatI	WGTACW	2 cut(s)	228, 294
TauI	GCSGC	2 cut(s)	243, 903
TfiI	GAWTC	4 cut(s)	79, 183, 337, 409
Tru1I	TTAA	3 cut(s)	804, 833, 848
Tru9I	TTAA	3 cut(s)	804, 833, 848
TscAI	CASTG	2 cut(s)	125, 579
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	620, 717, 812
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	125, 579
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	135, 567
XapI	RAATTY	2 cut(s)	289, 819
XceI	RCATGY	2 cut(s)	889, 1036
XspI	CTAG	3 cut(s)	684, 789, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.