Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

9216127 .. 9216829

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGGGAATGGGAGCTTACTAGGCAGGCTCATGGGCAGGTTTTGGTTGCTGGGTTCTTGTCGAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAAGTGTGGAGAGATGGCGGATGCCAGGAGATTGTTCGATGAGATGGCTGTGAGGGATAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTTGGATTTTTTGCAGAGATGATGCTGTTTCAAGTGAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAATACGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAATTTGGGGGCCGGAAGGCAGGTATTCAAGCTCATGGGTGATAAGCAAGACACCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTACGACCACCTTTGGTAGTCATTCTCAATGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

203

Amino Acids

22.27

Weight (kDa)

7.67

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 102	1.1e-10	PPR repeat family
PPR	PF01535	57 - 83	2.1e-08	PPR repeat
PPR_2	PF13041	157 - 196	5e-09	PPR repeat family
PPR	PF01535	159 - 189	1.9e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	28, 430
AciI	CCGC	2 cut(s)	119, 417
AcsI	RAATTY	1 cut(s)	336
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	480
AflII	CTTAAG	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	257, 448, 545
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	3 cut(s)	16, 314, 451
AluI	AGCT	3 cut(s)	16, 314, 451
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	263, 429
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	552
BccI	CCATC	2 cut(s)	109, 139
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	3 cut(s)	21, 201, 306
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	2 cut(s)	28, 430
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	127, 167
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	127, 167
BmsI	GCATC	3 cut(s)	82, 112, 237
BpiI	GAAGAC	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse118I	RCCGGY	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	97, 127
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	530
BseYI	CCCAGC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	265, 431
BsiSI	CCGG	3 cut(s)	167, 432, 572
BslI	CCNNNNNNNGG	1 cut(s)	480
BsnI	GGCC	2 cut(s)	265, 431
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	119, 417
BspANI	GGCC	2 cut(s)	265, 431
BspLI	GGNNCC	1 cut(s)	430
BspMI	ACCTGC	2 cut(s)	28, 430
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	530
BsrFI	RCCGGY	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	571
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	475
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	97, 127
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 223, 311
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	125, 165
BstV2I	GAAGAC	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	265, 431
BtsCI	GGATG	2 cut(s)	97, 127
BveI	ACCTGC	2 cut(s)	28, 430
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	429
CviJI	RGCY	8 cut(s)	16, 29, 149, 265, 314, 431, 451, 571
CviKI_1	RGCY	8 cut(s)	16, 29, 149, 265, 314, 431, 451, 571
DdeI	CTNAG	1 cut(s)	502
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	2 cut(s)	104, 134
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	3 cut(s)	21, 201, 306
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	418
GsaI	CCCAGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	265, 431
HapII	CCGG	3 cut(s)	167, 432, 572
HhaI	GCGC	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HpaII	CCGG	3 cut(s)	167, 432, 572
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	276, 332
Hpy8I	GTNNAC	2 cut(s)	276, 332
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	239, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 223, 311
HpyF3I	CTNAG	1 cut(s)	502
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	13
LweI	GCATC	3 cut(s)	82, 112, 237
MaeI	CTAG	3 cut(s)	21, 201, 306
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	557
MluCI	AATT	3 cut(s)	336, 361, 421
MnlI	CCTC	4 cut(s)	147, 255, 355, 520
MseI	TTAA	3 cut(s)	321, 350, 365
MslI	CAYNNNNRTG	2 cut(s)	491, 516
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	3 cut(s)	167, 432, 572
MspR9I	CCNGG	2 cut(s)	127, 167
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	22, 223, 311
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	265
PciI	ACATGT	1 cut(s)	402
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	419
PscI	ACATGT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	551
RseI	CAYNNNNRTG	2 cut(s)	491, 516
SaqAI	TTAA	3 cut(s)	321, 350, 365
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	429
ScrFI	CCNGG	2 cut(s)	127, 167
SetI	ASST	8 cut(s)	18, 42, 281, 316, 444, 453, 565, 587
SfaNI	GCATC	3 cut(s)	82, 112, 237
SmiMI	CAYNNNNRTG	2 cut(s)	491, 516
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	336, 361, 421
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	119, 417
SspMI	CTAG	3 cut(s)	21, 201, 306
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	125, 165
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	4 cut(s)	62, 77, 138, 399
TasI	AATT	3 cut(s)	336, 361, 421
TauI	GCSGC	1 cut(s)	420
Tru1I	TTAA	3 cut(s)	321, 350, 365
Tru9I	TTAA	3 cut(s)	321, 350, 365
TspDTI	ATGAA	2 cut(s)	234, 329
Tth111I	GACNNNGTC	1 cut(s)	551
Vha464I	CTTAAG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	3 cut(s)	21, 201, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.