Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036879.1

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

1197 .. 2144

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036879.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgccctctctctcctccccatctctgactctgccgcccaaacctaacaaacgcctcctccccaacaagcacaacaagccttcctgcctcgtccaatccatcctcaacctctgctcccaaggtcagctctcccaagccgtctcctccctcgacatcttattccgaaaagggattcgcttgcccaccaagtctctcgcttttctactgcagcattgcggagacgctcggtccctcagagaaggcaaatgggttcacttgtatttgaggctttctggattcaaacgcccacctttgcttttggctaaccatttgattgggatgtactttaaatgcggcgatgaggttgatgcacgcaaggtgtttgataaaatgtttgtgaggaatttgtactcgtggaacagtatgctatctgggtatgtgaagatgaggaatctgaaggaggcccggagcttgtttgataaaatgtctgagagggatgttgtgtcctggaacaccatggtgattggttatgcccagactggggaatgtgatgaggctttgaggttttatagagagttgcggaggtcgccggttgggtttaatgagtttagttttgcgggtgttttgactgtgtgtgtgaagatgagggaatgggagcttattaggcaagcgcatgggcaggttttggttgctgggtttttgtcgaatgtggtgctttcgagttcggtggtggatgcttatgccaagtgtggggagatggcggatgctaggagattgttcgatgagatggctgtgagggatgttcttgcttggacgacactggtttcgggatatgccaaatggggtgatatgaaatcagctagcgagttgtttgatcggatgcctgagaagaacccggtgtcatggacatctatgatttcggggtatgctaggaatggattggggcatgaagcgctttgtcaccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

315

Amino Acids

35.66

Weight (kDa)

9.44

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AciI	CCGC	6 cut(s)	35, 216, 333, 559, 596, 740
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	323, 389
AfeI	AGCGCT	1 cut(s)	933
AfiI	CCNNNNNNNGG	3 cut(s)	519, 520, 729
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	485
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	4 cut(s)	127, 450, 637, 839
AluI	AGCT	4 cut(s)	127, 450, 637, 839
Alw26I	GTCTC	3 cut(s)	145, 195, 213
Aor51HI	AGCGCT	1 cut(s)	933
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	787, 819
AspLEI	GCGC	2 cut(s)	652, 934
AspS9I	GGNCC	2 cut(s)	228, 442
AsuC2I	CCSGG	2 cut(s)	445, 875
AsuHPI	GGTGA	3 cut(s)	511, 836, 932
AsuNHI	GCTAGC	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	4 cut(s)	28, 107, 730, 760
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	445, 875
BcoDI	GTCTC	3 cut(s)	145, 195, 213
BfaI	CTAG	3 cut(s)	747, 840, 909
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	935
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	3 cut(s)	35, 209, 334
BlsI	GCNGC	3 cut(s)	36, 210, 335
Bme1390I	CCNGG	3 cut(s)	445, 487, 875
Bme18I	GGWCC	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	228, 442
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	3 cut(s)	445, 487, 875
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	4 cut(s)	337, 703, 733, 849
BmtI	GCTAGC	1 cut(s)	843
BmuI	ACTGGG	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	445, 875
BsaJI	CCNNGG	2 cut(s)	118, 495
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	519, 520, 729
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	523, 804
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	118, 495
BseGI	GGATG	7 cut(s)	99, 324, 481, 718, 748, 784, 864
BseLI	CCNNNNNNNGG	3 cut(s)	519, 520, 729
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	247, 459, 855
BseNI	ACTGG	2 cut(s)	523, 804
BseRI	GAGGAG	3 cut(s)	4, 47, 133
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	671
BshFI	GGCC	1 cut(s)	443
BsiSI	CCGG	3 cut(s)	445, 569, 875
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	3 cut(s)	519, 520, 729
BsmAI	GTCTC	3 cut(s)	145, 195, 213
BsmBI	CGTCTC	2 cut(s)	145, 213
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	853
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	6 cut(s)	35, 216, 333, 559, 596, 740
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	3 cut(s)	246, 460, 856
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	649
BspOI	GCTAGC	1 cut(s)	843
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	523, 804
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	118, 495
BssMI	GATC	1 cut(s)	853
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	118, 495
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	2 cut(s)	401, 610
BstC8I	GCNNGC	4 cut(s)	179, 352, 648, 841
BstDEI	CTNAG	3 cut(s)	233, 468, 864
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	7 cut(s)	99, 324, 481, 718, 748, 784, 864
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	2 cut(s)	652, 934
BstKTI	GATC	1 cut(s)	856
BstMAI	GTCTC	3 cut(s)	145, 195, 213
BstMBI	GATC	1 cut(s)	853
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 565, 643, 931
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	3 cut(s)	443, 485, 873
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	7 cut(s)	99, 324, 481, 718, 748, 784, 864
BtsIMutI	CAGTG	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	4 cut(s)	179, 352, 648, 841
CfoI	GCGC	2 cut(s)	652, 934
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	228, 442
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	322, 388
CviAII	CATG	4 cut(s)	496, 653, 882, 926
CviQI	GTAC	2 cut(s)	322, 388
DdeI	CTNAG	3 cut(s)	233, 468, 864
DpnI	GATC	1 cut(s)	855
DpnII	GATC	1 cut(s)	853
DraI	TTTAAA	1 cut(s)	328
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	755
Eco130I	CCWWGG	2 cut(s)	118, 495
Eco47I	GGWCC	1 cut(s)	228
Eco47III	AGCGCT	1 cut(s)	933
Eco57I	CTGAAG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	118, 495
ErhI	CCWWGG	2 cut(s)	118, 495
Esp3I	CGTCTC	2 cut(s)	145, 213
FaeI	CATG	4 cut(s)	499, 656, 885, 929
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	495, 652, 881, 925
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	35, 209, 334
FokI	GGATG	7 cut(s)	86, 331, 488, 725, 755, 791, 871
Fsp4HI	GCNGC	3 cut(s)	35, 209, 334
FspBI	CTAG	3 cut(s)	747, 840, 909
GlaI	GCGC	2 cut(s)	651, 933
GluI	GCNGC	3 cut(s)	35, 209, 334
GsaI	CCCAGC	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	3 cut(s)	445, 569, 875
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	652, 934
Hin1II	CATG	4 cut(s)	499, 656, 885, 929
Hin6I	GCGC	2 cut(s)	650, 932
HinP1I	GCGC	2 cut(s)	650, 932
HinfI	GANTC	4 cut(s)	28, 172, 276, 430
HpaII	CCGG	3 cut(s)	445, 569, 875
HphI	GGTGA	3 cut(s)	511, 836, 932
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	6 cut(s)	27, 164, 236, 435, 469, 858
Hpy188III	TCNNGA	2 cut(s)	273, 807
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	90, 233, 430
HpyCH4III	ACNGT	2 cut(s)	401, 610
HpyCH4V	TGCA	2 cut(s)	208, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 565, 643, 931
HpyF3I	CTNAG	3 cut(s)	233, 468, 864
Hsp92II	CATG	4 cut(s)	499, 656, 885, 929
HspAI	GCGC	2 cut(s)	650, 932
Kzo9I	GATC	1 cut(s)	853
LmnI	GCTCC	3 cut(s)	119, 447, 634
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	4 cut(s)	337, 703, 733, 849
MaeI	CTAG	3 cut(s)	747, 840, 909
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	1 cut(s)	855
MboI	GATC	1 cut(s)	853
MboII	GAAGA	3 cut(s)	433, 631, 880
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	22
MseI	TTAA	2 cut(s)	327, 579
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	3 cut(s)	445, 569, 875
MspR9I	CCNGG	3 cut(s)	445, 487, 875
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	4 cut(s)	76, 565, 643, 931
NciI	CCSGG	2 cut(s)	445, 875
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	1 cut(s)	853
NheI	GCTAGC	1 cut(s)	839
NlaIII	CATG	4 cut(s)	499, 656, 885, 929
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	938
OliI	CACNNNNGTG	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	172, 276, 430
PfoI	TCCNGGA	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	36, 210, 335
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	228, 442
PstI	CTGCAG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	323, 389
RsaNI	GTAC	2 cut(s)	322, 388
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	327, 579
SatI	GCNGC	3 cut(s)	35, 209, 334
Sau3AI	GATC	1 cut(s)	853
Sau96I	GGNCC	2 cut(s)	228, 442
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	445, 487, 875
SfaNI	GCATC	4 cut(s)	337, 703, 733, 849
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	6 cut(s)	35, 216, 333, 559, 596, 740
SspMI	CTAG	3 cut(s)	747, 840, 909
StyD4I	CCNGG	3 cut(s)	443, 485, 873
StyI	CCWWGG	2 cut(s)	118, 495
TaaI	ACNGT	2 cut(s)	401, 610
TaqI	TCGA	4 cut(s)	150, 683, 698, 759
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	382
TatI	WGTACW	2 cut(s)	321, 387
TauI	GCSGC	2 cut(s)	37, 336
TfiI	GAWTC	3 cut(s)	172, 276, 430
Tru1I	TTAA	2 cut(s)	327, 579
Tru9I	TTAA	2 cut(s)	327, 579
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	845, 942
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	382
XspI	CTAG	3 cut(s)	747, 840, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.