Rmu_sc0002634.1_g000016

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002634.1
Physical Location & Seq
Forward (+)
83307 .. 85154
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002634.1_g000016.1.cds

Sequence Viewer

Length: 1848 bp
atgccctctctctcctccccatctctgactctgccgcccaaacctaacaaacgcctcctccccaacaagcacaacaagccttcctgcctcgtccaatccatcatcaacctctgctcccaaggccagctctcccaagccgtctcgtccctcgacatcttattccgaaaagggattcgcttgcccaccaagtctctcgcttttctactgcagcattgcggagacgctcggtccctcagagaaggcaaatgggttcacttgtatttgaggctcactgggttcaaacgcccacctttgcttttggctaaccatttgattgggatgtacttcaaatgcggcgatgaggttgatgcacgcaaggtgtttgataaaatgtttgtgaggaatttgtactcgtggaacaatatgttatctgggcatgtgaagatgaggaatctgaaggaggcccggagcttgtttgataaaatgcctgagagggatgttgtgtcctggaacaccatggtgattggttatgcccagagtggggaatgtaatgaggctttgaggttttatagagagttgcggaggtcgccggttgggttgaatgagtttagttttgcaggtgttttgactgtgtgtgtgaagatgagggaatggaagcttattaggcaggctcatgggcaggttttggttgctgggtttttgtcgaatgtggtgctttcgagttcggtggtggatgcttatgccaagtgtggagagatggcggatgccaggagattgttcgatgagatggctgtgagggatgttcttgcttggaccactctggtttcgggatatgccaaatggggtgatatgaaatcagctagtgagttgtttgatcggatgcctgagaagaacccggtgtcatggacatctatgatttcggggtatgctaggaatggattgggacatgaagcgcttgcattgtttgcagagatgatgctgtttcaagtcaggcccgatcagtttacctttagtagttgcctttgtgcttgtgctagtatagcttcgcttaagcatggtaaacaaattcatgcctctttaatacgaagtaatttaagacccaacacgattgttgtgagttctcttatcgacatgtattccaaaggcggcagtttgggggccggaaggcaggttttcaagctcatgggtgataagcaagacatcgtgttatggaacacaatgatgtctgccttagcagagcatggtcatggtatagaggcattgcagatgtttgaagacatggtcagttcaggtgtaaagccggttacgaccacctttgttgtcattctcaatgcttgtagtcattctggtctagtgcaggaagggcgtaggattttcaagtccatgactggtgattatggcattgttcctgatgaggaacattatgcatgcttaattgatctcttgggtcgagctggatgttttgatgagttgatgaaccagctcgaaaatatgccatgtaaagctggcggtcaagtttggaatgcattacttggtgtttgtagaatccatggaaatacaaagctgggaggaaaagtggccgaacaccttattgagttggagcctcaatcttctgctccctatgttttgctttcaagcatttatgctgaagaaggtagatgggagctggtagagaaggtgagacggcttatggatgagagacatgtgaggaaagagcgggccattagttgggtggaagttgaaagtagagtgcatgctttcactgtatcagaccggctgcatcctctaaaagaggaaatatactcagttttgaaacagttagctgaccagatggaagaagatgcttcagtaactaacgccgagaactag

Protein Analysis

615

Amino Acids

68.96

Weight (kDa)

8.68

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 587
Acc36I ACCTGC 3 cut(s) 587, 649, 1138
AccB7I CCANNNNNTGG 1 cut(s) 1707
AccBSI CCGCTC 1 cut(s) 1696
AciI CCGC 8 cut(s) 35, 216, 333, 559, 740, 1125, 1488, 1696
AcoI YGGCCR 1 cut(s) 1557
AcsI RAATTY 2 cut(s) 382, 1044
AcuI CTGAAG 3 cut(s) 455, 1647, 1809
AfaI GTAC 2 cut(s) 323, 389
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 3 cut(s) 519, 520, 1707
AflII CTTAAG 1 cut(s) 1028
AflIII ACRYGT 2 cut(s) 1110, 1681
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 485, 746
AleI CACNNNNGTG 1 cut(s) 497
Alw26I GTCTC 5 cut(s) 145, 195, 213, 1654, 1672
Aor51HI AGCGCT 1 cut(s) 933
AoxI GGCC 6 cut(s) 121, 441, 971, 1137, 1557, 1698
ApeKI GCWGC 2 cut(s) 208, 1756
ApoI RAATTY 2 cut(s) 382, 1044
AspLEI GCGC 1 cut(s) 934
AspS9I GGNCC 6 cut(s) 228, 442, 792, 972, 1137, 1698
AsuC2I CCSGG 2 cut(s) 445, 875
AsuHPI GGTGA 5 cut(s) 511, 836, 1178, 1382, 1669
AvaII GGWCC 2 cut(s) 228, 792
BauI CACGAG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 1260
BbvI GCAGC 2 cut(s) 220, 1743
BccI CCATC 6 cut(s) 28, 107, 730, 760, 1632, 1804
BceAI ACGGC 2 cut(s) 122, 1679
BcgI CGANNNNNNTGC 2 cut(s) 673, 707
BciT130I CCWGG 2 cut(s) 487, 748
BcnI CCSGG 2 cut(s) 445, 875
BcoDI GTCTC 5 cut(s) 145, 195, 213, 1654, 1672
BfaI CTAG 5 cut(s) 840, 909, 1014, 1331, 1846
BfmI CTRYAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 935
BfrI CTTAAG 1 cut(s) 1028
BfuAI ACCTGC 3 cut(s) 587, 649, 1138
BisI GCNGC 5 cut(s) 35, 209, 334, 1126, 1757
BlsI GCNGC 5 cut(s) 36, 210, 335, 1127, 1758
Bme1390I CCNGG 4 cut(s) 445, 487, 748, 875
Bme18I GGWCC 2 cut(s) 228, 792
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 6 cut(s) 228, 442, 792, 972, 1137, 1698
BmiI GGNNCC 3 cut(s) 230, 1138, 1581
BmrFI CCNGG 4 cut(s) 445, 487, 748, 875
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 7 cut(s) 337, 703, 733, 849, 945, 1768, 1810
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 1260
Bpu10I CCTNAGC 1 cut(s) 1210
BpuMI CCSGG 2 cut(s) 445, 875
BsaJI CCNNGG 3 cut(s) 118, 495, 1528
BsaXI ACNNNNNCTCC 6 cut(s) 42, 72, 98, 128, 1539, 1569
Bsc4I CCNNNNNNNGG 3 cut(s) 519, 520, 1707
Bse118I RCCGGY 3 cut(s) 568, 1279, 1752
Bse1I ACTGG 2 cut(s) 277, 1372
Bse3DI GCAATG 2 cut(s) 211, 1238
BseBI CCWGG 2 cut(s) 487, 748
BseDI CCNNGG 3 cut(s) 118, 495, 1528
BseGI GGATG 9 cut(s) 324, 481, 718, 748, 784, 864, 1442, 1678, 1759
BseLI CCNNNNNNNGG 3 cut(s) 519, 520, 1707
BseMI GCAATG 2 cut(s) 211, 1238
BseMII CTCAG 4 cut(s) 247, 459, 855, 1797
BseNI ACTGG 2 cut(s) 277, 1372
BseRI GAGGAG 2 cut(s) 4, 47
BseXI GCAGC 2 cut(s) 220, 1743
BseYI CCCAGC 2 cut(s) 671, 1543
BsgI GTGCAG 1 cut(s) 1355
BshFI GGCC 6 cut(s) 123, 443, 973, 1139, 1559, 1700
BsiSI CCGG 6 cut(s) 445, 569, 875, 1140, 1280, 1753
BslFI GGGAC 3 cut(s) 130, 214, 936
BslI CCNNNNNNNGG 3 cut(s) 519, 520, 1707
BsmAI GTCTC 5 cut(s) 145, 195, 213, 1654, 1672
BsmBI CGTCTC 3 cut(s) 145, 213, 1654
BsmFI GGGAC 3 cut(s) 130, 214, 936
BsmI GAATGC 1 cut(s) 1507
BsnI GGCC 6 cut(s) 123, 443, 973, 1139, 1559, 1700
Bsp143I GATC 3 cut(s) 853, 976, 1417
Bsp19I CCATGG 2 cut(s) 495, 1528
BspACI CCGC 8 cut(s) 35, 216, 333, 559, 740, 1125, 1488, 1696
BspANI GGCC 6 cut(s) 123, 443, 973, 1139, 1559, 1700
BspCNI CTCAG 4 cut(s) 246, 460, 856, 1796
BspLI GGNNCC 3 cut(s) 230, 1138, 1581
BspMAI CTGCAG 1 cut(s) 210
BspMI ACCTGC 3 cut(s) 587, 649, 1138
BspTI CTTAAG 1 cut(s) 1028
BsrBI CCGCTC 1 cut(s) 1696
BsrDI GCAATG 2 cut(s) 211, 1238
BsrFI RCCGGY 3 cut(s) 568, 1279, 1752
BsrI ACTGG 2 cut(s) 277, 1372
BssAI RCCGGY 3 cut(s) 568, 1279, 1752
BssECI CCNNGG 3 cut(s) 118, 495, 1528
BssMI GATC 3 cut(s) 853, 976, 1417
BssSI CACGAG 1 cut(s) 391
BssT1I CCWWGG 3 cut(s) 118, 495, 1528
Bst2BI CACGAG 1 cut(s) 391
Bst2UI CCWGG 2 cut(s) 487, 748
Bst4CI ACNGT 3 cut(s) 610, 1744, 1797
BstAFI CTTAAG 1 cut(s) 1028
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 9 cut(s) 125, 179, 352, 648, 936, 1408, 1486, 1698, 1734
BstDEI CTNAG 5 cut(s) 233, 468, 864, 1210, 1783
BstDSI CCRYGG 2 cut(s) 495, 1528
BstF5I GGATG 9 cut(s) 324, 481, 718, 748, 784, 864, 1442, 1678, 1759
BstH2I RGCGCY 1 cut(s) 935
BstHHI GCGC 1 cut(s) 934
BstKTI GATC 3 cut(s) 856, 979, 1420
BstMAI GTCTC 5 cut(s) 145, 195, 213, 1654, 1672
BstMBI GATC 3 cut(s) 853, 976, 1417
BstMWI GCNNNNNNNGC 7 cut(s) 76, 120, 565, 643, 944, 1019, 1342
BstNI CCWGG 2 cut(s) 487, 748
BstNSI RCATGY 5 cut(s) 419, 1114, 1410, 1685, 1736
BstSCI CCNGG 4 cut(s) 443, 485, 746, 873
BstSFI CTRYAG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 220, 1743
BstV2I GAAGAC 1 cut(s) 1260
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 6 cut(s) 123, 443, 973, 1139, 1559, 1700
BtgI CCRYGG 2 cut(s) 495, 1528
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 9 cut(s) 324, 481, 718, 748, 784, 864, 1442, 1678, 1759
BtsIMutI CAGTG 2 cut(s) 270, 1740
BveI ACCTGC 3 cut(s) 587, 649, 1138
Cac8I GCNNGC 9 cut(s) 125, 179, 352, 648, 936, 1408, 1486, 1698, 1734
CfoI GCGC 1 cut(s) 934
Cfr10I RCCGGY 3 cut(s) 568, 1279, 1752
Cfr13I GGNCC 6 cut(s) 228, 442, 792, 972, 1137, 1698
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 322, 388
CspCI CAANNNNNGTGG 2 cut(s) 1279, 1314
CviQI GTAC 2 cut(s) 322, 388
DdeI CTNAG 5 cut(s) 233, 468, 864, 1210, 1783
DpnI GATC 3 cut(s) 855, 978, 1419
DpnII GATC 3 cut(s) 853, 976, 1417
DriI GACNNNNNGTC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 1557
Eam1105I GACNNNNNGTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 755
Eco130I CCWWGG 3 cut(s) 118, 495, 1528
Eco47I GGWCC 2 cut(s) 228, 792
Eco47III AGCGCT 1 cut(s) 933
Eco57I CTGAAG 3 cut(s) 455, 1647, 1809
EcoRII CCWGG 2 cut(s) 485, 746
EcoT14I CCWWGG 3 cut(s) 118, 495, 1528
EcoT22I ATGCAT 2 cut(s) 1408, 1507
ErhI CCWWGG 3 cut(s) 118, 495, 1528
Esp3I CGTCTC 3 cut(s) 145, 213, 1654
FaqI GGGAC 3 cut(s) 130, 214, 936
FauI CCCGC 1 cut(s) 1689
Fnu4HI GCNGC 5 cut(s) 35, 209, 334, 1126, 1757
FokI GGATG 9 cut(s) 331, 488, 725, 755, 791, 871, 1449, 1685, 1746
Fsp4HI GCNGC 5 cut(s) 35, 209, 334, 1126, 1757
FspBI CTAG 5 cut(s) 840, 909, 1014, 1331, 1846
GlaI GCGC 1 cut(s) 933
GluI GCNGC 5 cut(s) 35, 209, 334, 1126, 1757
GsaI CCCAGC 2 cut(s) 675, 1547
HaeII RGCGCY 1 cut(s) 935
HaeIII GGCC 6 cut(s) 123, 443, 973, 1139, 1559, 1700
HapII CCGG 6 cut(s) 445, 569, 875, 1140, 1280, 1753
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 934
Hin6I GCGC 1 cut(s) 932
HinP1I GCGC 1 cut(s) 932
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 4 cut(s) 28, 172, 430, 1524
HpaII CCGG 6 cut(s) 445, 569, 875, 1140, 1280, 1753
HphI GGTGA 5 cut(s) 511, 836, 1178, 1382, 1669
Hpy166II GTNNAC 3 cut(s) 253, 984, 1040
Hpy188I TCNGA 6 cut(s) 27, 164, 236, 435, 858, 1750
Hpy188III TCNNGA 2 cut(s) 807, 1388
Hpy8I GTNNAC 3 cut(s) 253, 984, 1040
HpyAV CCTTC 7 cut(s) 90, 233, 430, 1137, 1334, 1625, 1648
HpyCH4III ACNGT 3 cut(s) 610, 1744, 1797
HpyF10VI GCNNNNNNNGC 7 cut(s) 76, 120, 565, 643, 944, 1019, 1342
HpyF3I CTNAG 5 cut(s) 233, 468, 864, 1210, 1783
HspAI GCGC 1 cut(s) 932
Kzo9I GATC 3 cut(s) 853, 976, 1417
LmnI GCTCC 5 cut(s) 119, 447, 1579, 1600, 1642
Lsp1109I GCAGC 2 cut(s) 220, 1743
LweI GCATC 7 cut(s) 337, 703, 733, 849, 945, 1768, 1810
MaeI CTAG 5 cut(s) 840, 909, 1014, 1331, 1846
MaeIII GTNAC 2 cut(s) 1282, 1828
MalI GATC 3 cut(s) 855, 978, 1419
MbiI CCGCTC 1 cut(s) 1696
MboI GATC 3 cut(s) 853, 976, 1417
MboII GAAGA 8 cut(s) 433, 631, 880, 1265, 1581, 1640, 1826, 1829
MluCI AATT 4 cut(s) 382, 1044, 1069, 1413
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 1557
Mph1103I ATGCAT 2 cut(s) 1408, 1507
MseI TTAA 4 cut(s) 1029, 1058, 1073, 1412
MslI CAYNNNNRTG 3 cut(s) 497, 1199, 1224
MspCI CTTAAG 1 cut(s) 1028
MspI CCGG 6 cut(s) 445, 569, 875, 1140, 1280, 1753
MspR9I CCNGG 4 cut(s) 445, 487, 748, 875
Mva1269I GAATGC 1 cut(s) 1507
MvaI CCWGG 2 cut(s) 487, 748
MwoI GCNNNNNNNGC 7 cut(s) 76, 120, 565, 643, 944, 1019, 1342
NciI CCSGG 2 cut(s) 445, 875
NcoI CCATGG 2 cut(s) 495, 1528
NdeII GATC 3 cut(s) 853, 976, 1417
NlaIV GGNNCC 3 cut(s) 230, 1138, 1581
NsiI ATGCAT 2 cut(s) 1408, 1507
NspI RCATGY 5 cut(s) 419, 1114, 1410, 1685, 1736
OliI CACNNNNGTG 1 cut(s) 497
PaeI GCATGC 2 cut(s) 1410, 1736
PaqCI CACCTGC 1 cut(s) 587
PciI ACATGT 2 cut(s) 1110, 1681
PctI GAATGC 1 cut(s) 1507
PfeI GAWTC 3 cut(s) 172, 430, 1524
PflFI GACNNNGTC 1 cut(s) 1259
PflMI CCANNNNNTGG 1 cut(s) 1707
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 5 cut(s) 36, 210, 335, 1127, 1758
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PscI ACATGT 2 cut(s) 1110, 1681
Psp6I CCWGG 2 cut(s) 485, 746
PspFI CCCAGC 2 cut(s) 671, 1543
PspGI CCWGG 2 cut(s) 485, 746
PspN4I GGNNCC 3 cut(s) 230, 1138, 1581
PspPI GGNCC 6 cut(s) 228, 442, 792, 972, 1137, 1698
PstI CTGCAG 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 1259
RsaI GTAC 2 cut(s) 323, 389
RsaNI GTAC 2 cut(s) 322, 388
RseI CAYNNNNRTG 3 cut(s) 497, 1199, 1224
SaqAI TTAA 4 cut(s) 1029, 1058, 1073, 1412
SatI GCNGC 5 cut(s) 35, 209, 334, 1126, 1757
Sau3AI GATC 3 cut(s) 853, 976, 1417
Sau96I GGNCC 6 cut(s) 228, 442, 792, 972, 1137, 1698
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 4 cut(s) 445, 487, 748, 875
SfaNI GCATC 7 cut(s) 337, 703, 733, 849, 945, 1768, 1810
SfcI CTRYAG 1 cut(s) 206
SinI GGWCC 2 cut(s) 228, 792
SmiMI CAYNNNNRTG 3 cut(s) 497, 1199, 1224
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
SphI GCATGC 2 cut(s) 1410, 1736
Sse9I AATT 4 cut(s) 382, 1044, 1069, 1413
SsiI CCGC 8 cut(s) 35, 216, 333, 559, 740, 1125, 1488, 1696
SspMI CTAG 5 cut(s) 840, 909, 1014, 1331, 1846
StyD4I CCNGG 4 cut(s) 443, 485, 746, 873
StyI CCWWGG 3 cut(s) 118, 495, 1528
TaaI ACNGT 3 cut(s) 610, 1744, 1797
TaqI TCGA 7 cut(s) 150, 683, 698, 759, 1107, 1429, 1464
TaqII GACCGA 1 cut(s) 216
TasI AATT 4 cut(s) 382, 1044, 1069, 1413
TatI WGTACW 2 cut(s) 321, 387
TauI GCSGC 3 cut(s) 37, 336, 1128
TfiI GAWTC 3 cut(s) 172, 430, 1524
Tru1I TTAA 4 cut(s) 1029, 1058, 1073, 1412
Tru9I TTAA 4 cut(s) 1029, 1058, 1073, 1412
TscAI CASTG 2 cut(s) 277, 1747
TseI GCWGC 2 cut(s) 208, 1756
TspDTI ATGAA 4 cut(s) 845, 942, 1037, 1469
TspRI CASTG 2 cut(s) 277, 1747
Tth111I GACNNNGTC 1 cut(s) 1259
Van91I CCANNNNNTGG 1 cut(s) 1707
Vha464I CTTAAG 1 cut(s) 1028
VpaK11BI GGWCC 2 cut(s) 228, 792
XapI RAATTY 2 cut(s) 382, 1044
XceI RCATGY 5 cut(s) 419, 1114, 1410, 1685, 1736
XcmI CCANNNNNNNNNTGG 1 cut(s) 1708
XspI CTAG 5 cut(s) 840, 909, 1014, 1331, 1846
Zsp2I ATGCAT 2 cut(s) 1408, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.