Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 28 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 78 |
| AgsI | TTSAA | 4 cut(s) | 46, 143, 247, 421 |
| AluBI | AGCT | 4 cut(s) | 49, 323, 374, 431 |
| AluI | AGCT | 4 cut(s) | 49, 323, 374, 431 |
| ApeKI | GCWGC | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 1 cut(s) | 68 |
| BbsI | GAAGAC | 1 cut(s) | 150 |
| BbvI | GCAGC | 1 cut(s) | 372 |
| BccI | CCATC | 1 cut(s) | 433 |
| BfaI | CTAG | 2 cut(s) | 221, 475 |
| BfuAI | ACCTGC | 1 cut(s) | 28 |
| BisI | GCNGC | 1 cut(s) | 386 |
| BlsI | GCNGC | 1 cut(s) | 387 |
| BmsI | GCATC | 2 cut(s) | 397, 439 |
| BpiI | GAAGAC | 1 cut(s) | 150 |
| Bpu10I | CCTNAGC | 1 cut(s) | 100 |
| BsaAI | YACGTR | 1 cut(s) | 368 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 78 |
| Bse118I | RCCGGY | 2 cut(s) | 169, 381 |
| Bse3DI | GCAATG | 2 cut(s) | 128, 258 |
| BseGI | GGATG | 2 cut(s) | 332, 388 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BseMI | GCAATG | 2 cut(s) | 128, 258 |
| BseXI | GCAGC | 1 cut(s) | 372 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BsgI | GTGCAG | 1 cut(s) | 245 |
| Bsh1285I | CGRYCG | 1 cut(s) | 382 |
| BsiEI | CGRYCG | 1 cut(s) | 382 |
| BsiSI | CCGG | 2 cut(s) | 170, 382 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 78 |
| Bsp143I | GATC | 1 cut(s) | 307 |
| BspMI | ACCTGC | 1 cut(s) | 28 |
| BsrDI | GCAATG | 2 cut(s) | 128, 258 |
| BsrFI | RCCGGY | 2 cut(s) | 169, 381 |
| BssAI | RCCGGY | 2 cut(s) | 169, 381 |
| BssMI | GATC | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 426 |
| BstBAI | YACGTR | 1 cut(s) | 368 |
| BstC8I | GCNNGC | 2 cut(s) | 298, 376 |
| BstDEI | CTNAG | 1 cut(s) | 100 |
| BstF5I | GGATG | 2 cut(s) | 332, 388 |
| BstKTI | GATC | 1 cut(s) | 310 |
| BstMBI | GATC | 1 cut(s) | 307 |
| BstMCI | CGRYCG | 1 cut(s) | 382 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 232 |
| BstNSI | RCATGY | 1 cut(s) | 300 |
| BstV1I | GCAGC | 1 cut(s) | 372 |
| BstV2I | GAAGAC | 1 cut(s) | 150 |
| BtsCI | GGATG | 2 cut(s) | 332, 388 |
| BveI | ACCTGC | 1 cut(s) | 28 |
| Cac8I | GCNNGC | 2 cut(s) | 298, 376 |
| Cfr10I | RCCGGY | 2 cut(s) | 169, 381 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 169, 204 |
| CviAII | CATG | 5 cut(s) | 52, 110, 116, 148, 297 |
| CviJI | RGCY | 8 cut(s) | 29, 49, 169, 241, 323, 374, 385, 431 |
| CviKI_1 | RGCY | 8 cut(s) | 29, 49, 169, 241, 323, 374, 385, 431 |
| DdeI | CTNAG | 1 cut(s) | 100 |
| DpnI | GATC | 1 cut(s) | 309 |
| DpnII | GATC | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| EcoT22I | ATGCAT | 1 cut(s) | 298 |
| FaeI | CATG | 5 cut(s) | 55, 113, 119, 151, 300 |
| FatI | CATG | 5 cut(s) | 51, 109, 115, 147, 296 |
| Fnu4HI | GCNGC | 1 cut(s) | 386 |
| FokI | GGATG | 2 cut(s) | 339, 375 |
| Fsp4HI | GCNGC | 1 cut(s) | 386 |
| FspBI | CTAG | 2 cut(s) | 221, 475 |
| GluI | GCNGC | 1 cut(s) | 386 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| HapII | CCGG | 2 cut(s) | 170, 382 |
| Hin1II | CATG | 5 cut(s) | 55, 113, 119, 151, 300 |
| HpaII | CCGG | 2 cut(s) | 170, 382 |
| HphI | GGTGA | 1 cut(s) | 68 |
| Hpy188I | TCNGA | 1 cut(s) | 396 |
| HpyAV | CCTTC | 1 cut(s) | 224 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 426 |
| HpyCH4IV | ACGT | 1 cut(s) | 367 |
| HpyCH4V | TGCA | 4 cut(s) | 133, 226, 296, 388 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 232 |
| HpyF3I | CTNAG | 1 cut(s) | 100 |
| HpySE526I | ACGT | 1 cut(s) | 367 |
| Hsp92II | CATG | 5 cut(s) | 55, 113, 119, 151, 300 |
| Kzo9I | GATC | 1 cut(s) | 307 |
| Lsp1109I | GCAGC | 1 cut(s) | 372 |
| LweI | GCATC | 2 cut(s) | 397, 439 |
| MaeI | CTAG | 2 cut(s) | 221, 475 |
| MaeII | ACGT | 1 cut(s) | 367 |
| MaeIII | GTNAC | 2 cut(s) | 172, 457 |
| MalI | GATC | 1 cut(s) | 309 |
| MboI | GATC | 1 cut(s) | 307 |
| MboII | GAAGA | 3 cut(s) | 155, 455, 458 |
| MluCI | AATT | 2 cut(s) | 19, 303 |
| MnlI | CCTC | 5 cut(s) | 27, 118, 277, 394, 402 |
| Mph1103I | ATGCAT | 1 cut(s) | 298 |
| MseI | TTAA | 2 cut(s) | 302, 341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 89, 114 |
| MspI | CCGG | 2 cut(s) | 170, 382 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 232 |
| NdeII | GATC | 1 cut(s) | 307 |
| NlaIII | CATG | 5 cut(s) | 55, 113, 119, 151, 300 |
| NsiI | ATGCAT | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 300 |
| PaeI | GCATGC | 1 cut(s) | 300 |
| PflFI | GACNNNGTC | 1 cut(s) | 149 |
| PkrI | GCNGC | 1 cut(s) | 387 |
| Ppu21I | YACGTR | 1 cut(s) | 368 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| PsyI | GACNNNGTC | 1 cut(s) | 149 |
| RseI | CAYNNNNRTG | 2 cut(s) | 89, 114 |
| SaqAI | TTAA | 2 cut(s) | 302, 341 |
| SatI | GCNGC | 1 cut(s) | 386 |
| Sau3AI | GATC | 1 cut(s) | 307 |
| SetI | ASST | 8 cut(s) | 42, 51, 163, 185, 325, 370, 376, 433 |
| SfaNI | GCATC | 2 cut(s) | 397, 439 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 89, 114 |
| SphI | GCATGC | 1 cut(s) | 300 |
| Sse9I | AATT | 2 cut(s) | 19, 303 |
| SspMI | CTAG | 2 cut(s) | 221, 475 |
| TaaI | ACNGT | 2 cut(s) | 73, 426 |
| TaiI | ACGT | 1 cut(s) | 370 |
| TaqI | TCGA | 1 cut(s) | 319 |
| TasI | AATT | 2 cut(s) | 19, 303 |
| Tru1I | TTAA | 2 cut(s) | 302, 341 |
| Tru9I | TTAA | 2 cut(s) | 302, 341 |
| TseI | GCWGC | 1 cut(s) | 385 |
| TspDTI | ATGAA | 1 cut(s) | 359 |
| Tth111I | GACNNNGTC | 1 cut(s) | 149 |
| XceI | RCATGY | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 221, 475 |
| Zsp2I | ATGCAT | 1 cut(s) | 298 |