Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

58646061 .. 58647411

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCACATGATCAGATTTCGTGTCCAGGTTGACATAAATTACTCTTCCTTTGGAGCTCTTGTTTTCTTGTGCTATCCACATTCGCGTACGAACTATGAGCTTCTTCATGTCCAATCCATCCTCAACCTCTGCTCCCAAGGCCAACTCTCCCAACCCGTCTCCTCCCTCGACCTCTTATTCCGAAAAGGGATTCGCTTGCCACCAAGACTCTCGCTTTTCTACTGCAGCACTGTGGAGACGCTCGTTCCCTCAGAGAAGGCAAATGGGCTTTCTGGATTCAAACGCCCACCTTTGCTTTTGGCTAACCATTTGATTGGGATGTACTTCAAATGCGGCGATGAGGTTGATGCACGCAAGGTGTTTGATAAAATGTTTGTGAGGAATCTGTACTCGTGGAACAATATGCTATCTGGGTATGTGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGATAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTATGCCCAGACTGGGGAATGTGATGAGGCTTTGAGGTTTTCTAGGGAGTTGCGGAGATCGTCGATGAGGGAATGGGAGCTTATTAGGCAGGCTCATGGGCAGGTCTTGGTTGCTGGGTTTTTGTCGAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAGTTGTGGAGAGATGGTAGATGCTAGGAGGTTGTTCGATGAGATGTCTGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGCGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAGTCAGGCCGGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAATACGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAGTTTGGGGCCGGAAGGCAGGTTTTCAAGCTCATGGGTGATAAGCAAGACATCGTGTTATGGAACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

382

Amino Acids

43.14

Weight (kDa)

8.99

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	128 - 158	9.2e-06	PPR repeat family
PPR	PF01535	130 - 159	7.4e-08	PPR repeat
PPR	PF01535	246 - 274	5.2e-07	PPR repeat
PPR_2	PF13041	274 - 321	6e-11	PPR repeat family
PPR	PF01535	276 - 302	1.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	598, 1086
AccII	CGCG	1 cut(s)	85
AciI	CCGC	3 cut(s)	333, 559, 1074
AclWI	GGATC	1 cut(s)	933
AcsI	RAATTY	1 cut(s)	993
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	88, 323, 389
AfeI	AGCGCT	1 cut(s)	882
AfiI	CCNNNNNNNGG	2 cut(s)	519, 520
AflII	CTTAAG	1 cut(s)	977
AflIII	ACRYGT	1 cut(s)	1059
AgsI	TTSAA	4 cut(s)	280, 328, 914, 1104
AjnI	CCWGG	2 cut(s)	24, 485
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	7 cut(s)	56, 100, 450, 586, 788, 971, 1107
AluI	AGCT	7 cut(s)	56, 100, 450, 586, 788, 971, 1107
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	163, 230
AlwI	GGATC	1 cut(s)	933
Aor51HI	AGCGCT	1 cut(s)	882
AoxI	GGCC	4 cut(s)	139, 441, 920, 1085
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	993
AspLEI	GCGC	1 cut(s)	883
AspS9I	GGNCC	3 cut(s)	442, 741, 1085
AsuC2I	CCSGG	2 cut(s)	445, 824
AsuHPI	GGTGA	3 cut(s)	511, 785, 1126
AsuNHI	GCTAGC	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	125, 679
BcgI	CGANNNNNNTGC	2 cut(s)	622, 656
BciT130I	CCWGG	2 cut(s)	26, 487
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	445, 824
BcoDI	GTCTC	2 cut(s)	163, 230
BfaI	CTAG	5 cut(s)	549, 696, 789, 858, 963
BfmI	CTRYAG	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	884
BfrI	CTTAAG	1 cut(s)	977
BfuAI	ACCTGC	2 cut(s)	598, 1086
BisI	GCNGC	3 cut(s)	226, 334, 1075
BlsI	GCNGC	3 cut(s)	227, 335, 1076
Bme1390I	CCNGG	4 cut(s)	26, 445, 487, 824
Bme18I	GGWCC	1 cut(s)	741
BmgT120I	GGNCC	3 cut(s)	442, 741, 1085
BmiI	GGNNCC	1 cut(s)	1086
BmrFI	CCNGG	4 cut(s)	26, 445, 487, 824
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	5 cut(s)	337, 652, 682, 798, 894
BmtI	GCTAGC	1 cut(s)	792
BmuI	ACTGGG	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	445, 824
BsaJI	CCNNGG	2 cut(s)	136, 495
BsaXI	ACNNNNNCTCC	6 cut(s)	45, 75, 116, 146, 672, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 520
Bse1I	ACTGG	3 cut(s)	523, 672, 753
BseBI	CCWGG	2 cut(s)	26, 487
BseDI	CCNNGG	2 cut(s)	136, 495
BseGI	GGATG	6 cut(s)	117, 324, 481, 667, 733, 813
BseLI	CCNNNNNNNGG	2 cut(s)	519, 520
BseMII	CTCAG	3 cut(s)	264, 459, 804
BseNI	ACTGG	3 cut(s)	523, 672, 753
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	141, 443, 922, 1087
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	4 cut(s)	445, 824, 923, 1088
BsiWI	CGTACG	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	519, 520
BsmAI	GTCTC	2 cut(s)	163, 230
BsmBI	CGTCTC	2 cut(s)	163, 230
BsnI	GGCC	4 cut(s)	141, 443, 922, 1087
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	9, 563, 802, 925
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	3 cut(s)	333, 559, 1074
BspANI	GGCC	4 cut(s)	141, 443, 922, 1087
BspCNI	CTCAG	3 cut(s)	263, 460, 805
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	1086
BspMAI	CTGCAG	1 cut(s)	227
BspMI	ACCTGC	2 cut(s)	598, 1086
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	1 cut(s)	933
BspTI	CTTAAG	1 cut(s)	977
BsrI	ACTGG	3 cut(s)	523, 672, 753
BssECI	CCNNGG	2 cut(s)	136, 495
BssMI	GATC	4 cut(s)	9, 563, 802, 925
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	136, 495
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	26, 487
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	977
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	5 cut(s)	197, 352, 597, 790, 885
BstDEI	CTNAG	3 cut(s)	250, 468, 813
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	6 cut(s)	117, 324, 481, 667, 733, 813
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	884
BstHHI	GCGC	1 cut(s)	883
BstKTI	GATC	4 cut(s)	12, 566, 805, 928
BstMAI	GTCTC	2 cut(s)	163, 230
BstMBI	GATC	4 cut(s)	9, 563, 802, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 592, 880, 893, 968
BstNI	CCWGG	2 cut(s)	26, 487
BstNSI	RCATGY	1 cut(s)	1063
BstSCI	CCNGG	4 cut(s)	24, 443, 485, 822
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	141, 443, 922, 1087
BtgI	CCRYGG	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	6 cut(s)	117, 324, 481, 667, 733, 813
BtsIMutI	CAGTG	2 cut(s)	228, 746
BveI	ACCTGC	2 cut(s)	598, 1086
Cac8I	GCNNGC	5 cut(s)	197, 352, 597, 790, 885
CfoI	GCGC	1 cut(s)	883
Cfr13I	GGNCC	3 cut(s)	442, 741, 1085
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	87, 322, 388
CviQI	GTAC	3 cut(s)	87, 322, 388
DdeI	CTNAG	3 cut(s)	250, 468, 813
DpnI	GATC	4 cut(s)	11, 565, 804, 927
DpnII	GATC	4 cut(s)	9, 563, 802, 925
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	136, 495
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	741
Eco47III	AGCGCT	1 cut(s)	882
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	24, 485
EcoT14I	CCWWGG	2 cut(s)	136, 495
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	136, 495
Esp3I	CGTCTC	2 cut(s)	163, 230
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	226, 334, 1075
FokI	GGATG	6 cut(s)	104, 331, 488, 674, 740, 820
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	226, 334, 1075
FspBI	CTAG	5 cut(s)	549, 696, 789, 858, 963
GlaI	GCGC	1 cut(s)	882
GluI	GCNGC	3 cut(s)	226, 334, 1075
GsaI	CCCAGC	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	884
HaeIII	GGCC	4 cut(s)	141, 443, 922, 1087
HapII	CCGG	4 cut(s)	445, 824, 923, 1088
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	883
Hin6I	GCGC	1 cut(s)	881
HinP1I	GCGC	1 cut(s)	881
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	5 cut(s)	190, 207, 276, 382, 430
HpaII	CCGG	4 cut(s)	445, 824, 923, 1088
HphI	GGTGA	3 cut(s)	511, 785, 1126
Hpy166II	GTNNAC	3 cut(s)	31, 933, 989
Hpy188I	TCNGA	5 cut(s)	14, 182, 253, 435, 807
Hpy188III	TCNNGA	2 cut(s)	273, 756
Hpy8I	GTNNAC	3 cut(s)	31, 933, 989
Hpy99I	CGWCG	1 cut(s)	571
HpyAV	CCTTC	3 cut(s)	250, 430, 1085
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	4, 225, 350, 887, 896
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 592, 880, 893, 968
HpyF3I	CTNAG	3 cut(s)	250, 468, 813
HspAI	GCGC	1 cut(s)	881
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 563, 802, 925
LmnI	GCTCC	4 cut(s)	53, 137, 447, 583
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	5 cut(s)	337, 652, 682, 798, 894
MaeI	CTAG	5 cut(s)	549, 696, 789, 858, 963
MalI	GATC	4 cut(s)	11, 565, 804, 927
MboI	GATC	4 cut(s)	9, 563, 802, 925
MboII	GAAGA	4 cut(s)	36, 95, 433, 829
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	3 cut(s)	37, 993, 1018
MlyI	GAGTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	978, 1007, 1022
MslI	CAYNNNNRTG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	977
MspI	CCGG	4 cut(s)	445, 824, 923, 1088
MspR9I	CCNGG	4 cut(s)	26, 445, 487, 824
MvaI	CCWGG	2 cut(s)	26, 487
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	5 cut(s)	138, 592, 880, 893, 968
NciI	CCSGG	2 cut(s)	445, 824
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	9, 563, 802, 925
NheI	GCTAGC	1 cut(s)	788
NlaIV	GGNNCC	1 cut(s)	1086
NspI	RCATGY	1 cut(s)	1063
OliI	CACNNNNGTG	1 cut(s)	497
PciI	ACATGT	1 cut(s)	1059
PfeI	GAWTC	4 cut(s)	190, 276, 382, 430
Pfl23II	CGTACG	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	227, 335, 1076
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PscI	ACATGT	1 cut(s)	1059
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	24, 485
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	24, 485
PspLI	CGTACG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	1086
PspPI	GGNCC	3 cut(s)	442, 741, 1085
PstI	CTGCAG	1 cut(s)	227
RsaI	GTAC	3 cut(s)	88, 323, 389
RsaNI	GTAC	3 cut(s)	87, 322, 388
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	978, 1007, 1022
SatI	GCNGC	3 cut(s)	226, 334, 1075
Sau3AI	GATC	4 cut(s)	9, 563, 802, 925
Sau96I	GGNCC	3 cut(s)	442, 741, 1085
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	4 cut(s)	26, 445, 487, 824
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	5 cut(s)	337, 652, 682, 798, 894
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
Sse9I	AATT	3 cut(s)	37, 993, 1018
SsiI	CCGC	3 cut(s)	333, 559, 1074
SspMI	CTAG	5 cut(s)	549, 696, 789, 858, 963
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	4 cut(s)	24, 443, 485, 822
StyI	CCWWGG	2 cut(s)	136, 495
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	6 cut(s)	168, 569, 632, 647, 708, 1056
TasI	AATT	3 cut(s)	37, 993, 1018
TatI	WGTACW	2 cut(s)	321, 387
TauI	GCSGC	2 cut(s)	336, 1077
TfiI	GAWTC	4 cut(s)	190, 276, 382, 430
Tru1I	TTAA	3 cut(s)	978, 1007, 1022
Tru9I	TTAA	3 cut(s)	978, 1007, 1022
TscAI	CASTG	2 cut(s)	235, 753
TseI	GCWGC	1 cut(s)	225
TspDTI	ATGAA	4 cut(s)	95, 794, 891, 986
TspRI	CASTG	2 cut(s)	235, 753
Vha464I	CTTAAG	1 cut(s)	977
VpaK11BI	GGWCC	1 cut(s)	741
XapI	RAATTY	1 cut(s)	993
XceI	RCATGY	1 cut(s)	1063
XspI	CTAG	5 cut(s)	549, 696, 789, 858, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.