Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

11122315 .. 11123830

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG056700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAGCTCTCTTGTTTTCTTGTGCCATCCCCATTCTCATATACTCATACTAACTATGAGCTTCTTCATCTCCAATCCATCCTCAACCTCTGCTCCCAAGCGAGAGTCTTGGTTCGCTTGCCCACCAAGACTCTTGCTTTTCTACTGCAGCATTGTGGAGACGCTCGATCCCTCAGAGAAGGCAAATGGGTTCACTTGTATTTGAGGCTCAACGGATTCAAACGCCCGCCTTTGCTTTTGGCTAACCATTTGATTGGGATGTACTTCAAATGCGGCGATGAGGGCAATGCATGCAAGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAATATGCTATCTGGGAATGCGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGAGAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTGTGCCCAGACTGGGGAATGTGATGAGGCTTTGAGGCAGGCTCATGGGCAGGTTTTGGTTGCTGGGTTTTTGTCGAATGAGGTGCTTTCGAGTTCAGTGGTGGATGCTTTTGCCAAGTGTGGGGAGATGGCGGATGCCAGGAGATTGTTCGATGAGATGGCTGTGAGGGATGTTCTTGCTTGGACCACTCTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATTAGCTGGTTTCAAGCTCATGGGTGATAAGCAAGACATCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATATTTGAAGACATGGGCGGTAAGGAGAGCAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

8.09

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	110 - 139	1.7e-06	PPR repeat
PPR	PF01535	238 - 264	2.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	4 cut(s)	227, 273, 578, 792
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	263, 329
AfiI	CCNNNNNNNGG	3 cut(s)	459, 460, 567
AgsI	TTSAA	4 cut(s)	220, 268, 685, 782
AjnI	CCWGG	2 cut(s)	425, 584
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	5 cut(s)	7, 61, 390, 677, 688
AluI	AGCT	5 cut(s)	7, 61, 390, 677, 688
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	382, 630
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	3 cut(s)	451, 674, 707
AvaII	GGWCC	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	4 cut(s)	34, 86, 568, 598
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	2 cut(s)	427, 586
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	149, 274
BlsI	GCNGC	2 cut(s)	150, 275
Bme1390I	CCNGG	3 cut(s)	385, 427, 586
Bme18I	GGWCC	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	382, 630
BmrFI	CCNGG	3 cut(s)	385, 427, 586
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	541, 571
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	789
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bpu10I	CCTNAGC	1 cut(s)	739
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 460, 567
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	2 cut(s)	292, 767
BseBI	CCWGG	2 cut(s)	427, 586
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	7 cut(s)	26, 78, 264, 421, 556, 586, 622
BseLI	CCNNNNNNNGG	3 cut(s)	459, 460, 567
BseMI	GCAATG	2 cut(s)	292, 767
BseMII	CTCAG	2 cut(s)	187, 399
BseNI	ACTGG	1 cut(s)	463
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	509
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	459, 460, 567
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	9, 454
Bsp143I	GATC	1 cut(s)	167
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	4 cut(s)	227, 273, 578, 792
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	2 cut(s)	186, 400
BspMAI	CTGCAG	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	292, 767
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	167
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	427, 586
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	119, 227, 292, 486
BstDEI	CTNAG	3 cut(s)	173, 408, 739
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	7 cut(s)	26, 78, 264, 421, 556, 586, 622
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 291
BstNI	CCWGG	2 cut(s)	427, 586
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	383, 425, 584
BstSFI	CTRYAG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	789
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	7 cut(s)	26, 78, 264, 421, 556, 586, 622
BtsIMutI	CAGTG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	119, 227, 292, 486
Cfr13I	GGNCC	2 cut(s)	382, 630
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	262, 328
CviAII	CATG	7 cut(s)	291, 436, 491, 691, 749, 755, 787
CviQI	GTAC	2 cut(s)	262, 328
DdeI	CTNAG	3 cut(s)	173, 408, 739
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	593
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	425, 584
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	7 cut(s)	294, 439, 494, 694, 752, 758, 790
FatI	CATG	7 cut(s)	290, 435, 490, 690, 748, 754, 786
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	149, 274
FokI	GGATG	7 cut(s)	13, 65, 271, 428, 563, 593, 629
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	149, 274
GluI	GCNGC	2 cut(s)	149, 274
GsaI	CCCAGC	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	7 cut(s)	294, 439, 494, 694, 752, 758, 790
HinfI	GANTC	4 cut(s)	105, 130, 216, 370
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	3 cut(s)	451, 674, 707
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	176, 375
Hpy188III	TCNNGA	1 cut(s)	645
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	173, 370
HpyCH4V	TGCA	4 cut(s)	148, 290, 294, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 291
HpyF3I	CTNAG	3 cut(s)	173, 408, 739
Hsp92II	CATG	7 cut(s)	294, 439, 494, 694, 752, 758, 790
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	4, 98, 387
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	541, 571
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	3 cut(s)	56, 373, 794
MhlI	GDGCHC	2 cut(s)	9, 454
MluCI	AATT	2 cut(s)	322, 671
MlyI	GAGTC	2 cut(s)	114, 124
Mph1103I	ATGCAT	1 cut(s)	292
MslI	CAYNNNNRTG	3 cut(s)	437, 728, 753
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	3 cut(s)	385, 427, 586
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	427, 586
MwoI	GCNNNNNNNGC	2 cut(s)	282, 291
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	7 cut(s)	294, 439, 494, 694, 752, 758, 790
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	294
OliI	CACNNNNGTG	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	216, 370
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	150, 275
PleI	GAGTC	2 cut(s)	113, 124
PpsI	GAGTC	2 cut(s)	113, 124
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	425, 584
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	425, 584
PspPI	GGNCC	2 cut(s)	382, 630
PstI	CTGCAG	1 cut(s)	150
RsaI	GTAC	2 cut(s)	263, 329
RsaNI	GTAC	2 cut(s)	262, 328
RseI	CAYNNNNRTG	3 cut(s)	437, 728, 753
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	2 cut(s)	149, 274
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	2 cut(s)	382, 630
SchI	GAGTC	2 cut(s)	114, 124
ScrFI	CCNGG	3 cut(s)	385, 427, 586
SduI	GDGCHC	2 cut(s)	9, 454
SetI	ASST	9 cut(s)	9, 63, 90, 300, 392, 501, 531, 679, 690
SfaNI	GCATC	2 cut(s)	541, 571
SfcI	CTRYAG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	630
SmiMI	CAYNNNNRTG	3 cut(s)	437, 728, 753
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	2 cut(s)	322, 671
SsiI	CCGC	4 cut(s)	227, 273, 578, 792
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	383, 425, 584
StyI	CCWWGG	1 cut(s)	435
TaqI	TCGA	4 cut(s)	166, 521, 536, 597
TasI	AATT	2 cut(s)	322, 671
TatI	WGTACW	2 cut(s)	261, 327
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	216, 370
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	56, 683
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	630
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.