Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Forward (+)

58753932 .. 58756187

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATGCTGTTTCAAGTTAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAGTAAGAACTCTAGATTTGACAAAACATGAATTGCAAGCCATCCTTGGACCAGAGATATCAATGGAAGCCAAAAGCCAAACAAATGTTTACTTCAACTCGGCGAAGCTTGAAACTTTGCAGGTCTACCAACATGGTCCATATATTTGCAAGGCCTTGTCAACTACCAGATTTGAAGACATAGTTGGAGTGCAGCCTTATTGGTGGTCAACTTCAATCACCAACTTCTCAGATAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

7.7

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	5 cut(s)	14, 202, 218, 281, 321
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	2 cut(s)	71, 214
AluI	AGCT	2 cut(s)	71, 214
AoxI	GGCC	2 cut(s)	20, 258
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	155, 242
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	155, 242
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	2 cut(s)	63, 119
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme18I	GGWCC	2 cut(s)	155, 242
BmgT120I	GGNCC	2 cut(s)	155, 242
BpiI	GAAGAC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	22, 260
BsnI	GGCC	2 cut(s)	22, 260
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	22, 260
BspCNI	CTCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	151
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	22, 260
BtsCI	GGATG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	155, 242
CviAII	CATG	4 cut(s)	83, 98, 134, 239
CviJI	RGCY	8 cut(s)	22, 71, 146, 176, 183, 214, 260, 301
CviKI_1	RGCY	8 cut(s)	22, 71, 146, 176, 183, 214, 260, 301
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	2 cut(s)	22, 260
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	155, 242
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	86, 101, 137, 242
FaiI	YATR	8 cut(s)	68, 84, 99, 135, 240, 247, 249, 287
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	4 cut(s)	82, 97, 133, 238
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	63, 119
GluI	GCNGC	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	22, 260
Hin1II	CATG	4 cut(s)	86, 101, 137, 242
HincII	GTYRAC	2 cut(s)	267, 315
HindII	GTYRAC	2 cut(s)	267, 315
HindIII	AAGCTT	1 cut(s)	212
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	6 cut(s)	33, 89, 196, 232, 267, 315
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	6 cut(s)	33, 89, 196, 232, 267, 315
HpyCH4V	TGCA	4 cut(s)	142, 226, 255, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	334
Hsp92II	CATG	4 cut(s)	86, 101, 137, 242
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	36, 171, 212, 286
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	63, 119
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	293
MluCI	AATT	2 cut(s)	93, 137
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	1 cut(s)	112
MseI	TTAA	1 cut(s)	78
MspCI	CTTAAG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	86, 101, 137, 242
NmeAIII	GCCGAG	1 cut(s)	185
PceI	AGGCCT	2 cut(s)	22, 260
PkrI	GCNGC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	155, 242
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	155, 242
SetI	ASST	4 cut(s)	38, 73, 216, 231
SinI	GGWCC	2 cut(s)	155, 242
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	93, 137
SseBI	AGGCCT	2 cut(s)	22, 260
SspMI	CTAG	2 cut(s)	63, 119
StuI	AGGCCT	2 cut(s)	22, 260
StyI	CCWWGG	1 cut(s)	151
TasI	AATT	2 cut(s)	93, 137
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	86, 150
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	155, 242
XapI	RAATTY	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	63, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.