Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018955

Physical Location & Seq

Genomic Coordinates Reverse (-)

10990474 .. 10990930

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTACTTCAAATGCGGCGATGAGGGCGATGCACACAAGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAATATGTTATCTGGGAATGCGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGAGAAAATGCCTGAGAGGGATGTTGGGTCCTGGAACACCATGGTGATTGGTTATGCCCAGACTGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGAGTCGCGGAGATCGTCGGTTACTGGTGTTTTGACTGGGTGTGTGAAGATGAGGGAATGGGAGCTTATTACTTTATTAGGCAGGCTGTGGTTTGGACATATCAATCGTGGAAGTATTCCGGAGACATTGGGTGATCTCGGATGTGGGTTTCGAATGTTATTCTTTGTGATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

136

Amino Acids

15.79

Weight (kDa)

9.0

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	24 - 53	5.7e-07	PPR repeat
PPR	PF01535	56 - 83	8.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018955)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323521 RchiOBHm_Chr1g0323551 RchiOBHm_Chr1g0323691 RchiOBHm_Chr6g0265171 RchiOBHm_Chr6g0311141
rosa_laevigata	RLG00000030330
rosa_rugosa	Rorug01G0038300
rosa_samantha	Rh1AG056000 Rh1CG056400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	2 cut(s)	15, 241
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	2 cut(s)	5, 71
AfiI	CCNNNNNNNGG	2 cut(s)	201, 202
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	167
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	132, 298
AluI	AGCT	2 cut(s)	132, 298
Alw26I	GTCTC	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	124, 165
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	193, 377
AsuII	TTCGAA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	127, 169
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	124, 165
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	127, 169
BmrI	ACTGGG	2 cut(s)	210, 279
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	2 cut(s)	210, 279
Bpu14I	TTCGAA	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 202
Bse1I	ACTGG	3 cut(s)	205, 262, 274
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	163, 380
BseLI	CCNNNNNNNGG	2 cut(s)	201, 202
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	3 cut(s)	205, 262, 274
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	127, 353
BslI	CCNNNNNNNGG	2 cut(s)	201, 202
BsmAI	GTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	385
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	245, 367
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	2 cut(s)	15, 241
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	205, 262, 274
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	245, 367
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	163, 380
BstFNI	CGCG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	248, 370
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	245, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	125, 167
BstUI	CGCG	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	2 cut(s)	33, 42
BtsCI	GGATG	2 cut(s)	163, 380
Cac8I	GCNNGC	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	124, 165
Csp6I	GTAC	2 cut(s)	4, 70
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	5 cut(s)	125, 132, 218, 298, 319
CviKI_1	RGCY	5 cut(s)	125, 132, 218, 298, 319
CviQI	GTAC	2 cut(s)	4, 70
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	247, 369
DpnII	GATC	2 cut(s)	245, 367
DraIII	CACNNNGTG	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	86, 179, 192, 231, 333
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	2 cut(s)	170, 387
Fsp4HI	GCNGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	2 cut(s)	127, 353
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	3 cut(s)	112, 236, 403
HpaII	CCGG	2 cut(s)	127, 353
HphI	GGTGA	2 cut(s)	193, 377
Hpy188I	TCNGA	2 cut(s)	117, 374
Hpy188III	TCNNGA	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	245, 367
LmnI	GCTCC	2 cut(s)	129, 295
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	247, 369
MboI	GATC	2 cut(s)	245, 367
MboII	GAAGA	2 cut(s)	115, 292
MluCI	AATT	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	8 cut(s)	16, 54, 102, 115, 147, 208, 216, 279
MroI	TCCGGA	1 cut(s)	352
MseI	TTAA	1 cut(s)	409
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	2 cut(s)	127, 353
MspR9I	CCNGG	2 cut(s)	127, 169
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	245, 367
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	385
OliI	CACNNNNGTG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	112, 403
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	124, 165
PspPPI	RGGWCCY	1 cut(s)	165
RsaI	GTAC	2 cut(s)	5, 71
RsaNI	GTAC	2 cut(s)	4, 70
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	245, 367
Sau96I	GGNCC	2 cut(s)	124, 165
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	127, 169
SetI	ASST	4 cut(s)	42, 134, 227, 300
SfaNI	GCATC	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	385
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	15, 241
StyD4I	CCNGG	2 cut(s)	125, 167
StyI	CCWWGG	1 cut(s)	177
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	64
TatI	WGTACW	2 cut(s)	3, 69
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	112, 403
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.