Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0323521 RchiOBHm_Chr1g0323551 RchiOBHm_Chr1g0323691 RchiOBHm_Chr6g0265171 RchiOBHm_Chr6g0311141 |
| rosa_laevigata | RLG00000030330 |
| rosa_rugosa | Rorug01G0038300 |
| rosa_samantha | Rh1AG056000 Rh1CG056400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 15, 241, 278, 356 |
| AcsI | RAATTY | 1 cut(s) | 64 |
| AcuI | CTGAAG | 1 cut(s) | 137 |
| AfaI | GTAC | 2 cut(s) | 5, 71 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 201, 202 |
| AgsI | TTSAA | 1 cut(s) | 10 |
| AjnI | CCWGG | 1 cut(s) | 167 |
| AleI | CACNNNNGTG | 1 cut(s) | 179 |
| AluBI | AGCT | 2 cut(s) | 319, 455 |
| AluI | AGCT | 2 cut(s) | 319, 455 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 64 |
| AspS9I | GGNCC | 2 cut(s) | 124, 408 |
| AsuC2I | CCSGG | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 2 cut(s) | 193, 452 |
| AvaII | GGWCC | 1 cut(s) | 408 |
| BauI | CACGAG | 1 cut(s) | 73 |
| BccI | CCATC | 3 cut(s) | 298, 346, 376 |
| BciT130I | CCWGG | 1 cut(s) | 169 |
| BcnI | CCSGG | 1 cut(s) | 127 |
| BfaI | CTAG | 3 cut(s) | 363, 456, 525 |
| BisI | GCNGC | 1 cut(s) | 16 |
| BlsI | GCNGC | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 169 |
| Bme18I | GGWCC | 1 cut(s) | 408 |
| BmgT120I | GGNCC | 2 cut(s) | 124, 408 |
| BmrFI | CCNGG | 2 cut(s) | 127, 169 |
| BmrI | ACTGGG | 1 cut(s) | 485 |
| BmsI | GCATC | 3 cut(s) | 19, 349, 465 |
| BmuI | ACTGGG | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 1 cut(s) | 500 |
| BpuMI | CCSGG | 1 cut(s) | 127 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 201, 202 |
| Bse1I | ACTGG | 2 cut(s) | 420, 491 |
| BseBI | CCWGG | 1 cut(s) | 169 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseGI | GGATG | 5 cut(s) | 34, 163, 364, 400, 480 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 201, 202 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseNI | ACTGG | 2 cut(s) | 420, 491 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BsiSI | CCGG | 1 cut(s) | 127 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 201, 202 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bsp143I | GATC | 2 cut(s) | 245, 469 |
| Bsp19I | CCATGG | 1 cut(s) | 177 |
| BspACI | CCGC | 7 cut(s) | 66, 652, 870, 953, 1294, 1407, 2280 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BsrI | ACTGG | 2 cut(s) | 420, 491 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| BssMI | GATC | 2 cut(s) | 245, 469 |
| BssSI | CACGAG | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst2BI | CACGAG | 1 cut(s) | 73 |
| Bst2UI | CCWGG | 1 cut(s) | 169 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 1 cut(s) | 150 |
| BstDSI | CCRYGG | 1 cut(s) | 177 |
| BstF5I | GGATG | 5 cut(s) | 34, 163, 364, 400, 480 |
| BstKTI | GATC | 2 cut(s) | 248, 472 |
| BstMBI | GATC | 2 cut(s) | 245, 469 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 325 |
| BstNI | CCWGG | 1 cut(s) | 169 |
| BstSCI | CCNGG | 2 cut(s) | 125, 167 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 498 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| BtgI | CCRYGG | 1 cut(s) | 177 |
| BtgZI | GCGATG | 1 cut(s) | 33 |
| BtsCI | GGATG | 5 cut(s) | 34, 163, 364, 400, 480 |
| BtsI | GCAGTG | 1 cut(s) | 347 |
| BtsIMutI | CAGTG | 3 cut(s) | 347, 413, 498 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 2 cut(s) | 124, 408 |
| Csp6I | GTAC | 2 cut(s) | 4, 70 |
| CviAII | CATG | 3 cut(s) | 178, 335, 498 |
| CviJI | RGCY | 5 cut(s) | 125, 218, 319, 386, 455 |
| CviKI_1 | RGCY | 5 cut(s) | 125, 218, 319, 386, 455 |
| CviQI | GTAC | 2 cut(s) | 4, 70 |
| DdeI | CTNAG | 1 cut(s) | 150 |
| DpnI | GATC | 2 cut(s) | 247, 471 |
| DpnII | GATC | 2 cut(s) | 245, 469 |
| EciI | GGCGGA | 1 cut(s) | 371 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco47I | GGWCC | 1 cut(s) | 408 |
| Eco57I | CTGAAG | 1 cut(s) | 137 |
| EcoRII | CCWGG | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| FaeI | CATG | 3 cut(s) | 181, 338, 501 |
| FatI | CATG | 3 cut(s) | 177, 334, 497 |
| FauI | CCCGC | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 1 cut(s) | 16 |
| FokI | GGATG | 5 cut(s) | 41, 170, 371, 407, 487 |
| Fsp4HI | GCNGC | 1 cut(s) | 16 |
| FspBI | CTAG | 3 cut(s) | 363, 456, 525 |
| GluI | GCNGC | 1 cut(s) | 16 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| HapII | CCGG | 1 cut(s) | 127 |
| Hin1II | CATG | 3 cut(s) | 181, 338, 501 |
| HinfI | GANTC | 1 cut(s) | 112 |
| HpaII | CCGG | 1 cut(s) | 127 |
| HphI | GGTGA | 2 cut(s) | 193, 452 |
| Hpy188I | TCNGA | 2 cut(s) | 117, 474 |
| Hpy188III | TCNNGA | 1 cut(s) | 423 |
| Hpy99I | CGWCG | 1 cut(s) | 253 |
| HpyAV | CCTTC | 1 cut(s) | 112 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 2 cut(s) | 32, 101 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 325 |
| HpyF3I | CTNAG | 1 cut(s) | 150 |
| Hsp92II | CATG | 3 cut(s) | 181, 338, 501 |
| Kzo9I | GATC | 2 cut(s) | 245, 469 |
| LmnI | GCTCC | 1 cut(s) | 316 |
| LpnPI | CCDG | 9 cut(s) | 78, 140, 154, 162, 181, 209, 314, 401, 504 |
| LweI | GCATC | 3 cut(s) | 19, 349, 465 |
| MaeI | CTAG | 3 cut(s) | 363, 456, 525 |
| MalI | GATC | 2 cut(s) | 247, 471 |
| MboI | GATC | 2 cut(s) | 245, 469 |
| MboII | GAAGA | 2 cut(s) | 313, 496 |
| MluCI | AATT | 1 cut(s) | 64 |
| MnlI | CCTC | 7 cut(s) | 16, 102, 115, 147, 208, 216, 384 |
| MseI | TTAA | 1 cut(s) | 261 |
| MslI | CAYNNNNRTG | 1 cut(s) | 179 |
| MspI | CCGG | 1 cut(s) | 127 |
| MspR9I | CCNGG | 2 cut(s) | 127, 169 |
| MvaI | CCWGG | 1 cut(s) | 169 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 325 |
| NciI | CCSGG | 1 cut(s) | 127 |
| NcoI | CCATGG | 1 cut(s) | 177 |
| NdeII | GATC | 2 cut(s) | 245, 469 |
| NlaIII | CATG | 3 cut(s) | 181, 338, 501 |
| OliI | CACNNNNGTG | 1 cut(s) | 179 |
| PfeI | GAWTC | 1 cut(s) | 112 |
| PfoI | TCCNGGA | 1 cut(s) | 167 |
| PkrI | GCNGC | 1 cut(s) | 17 |
| Psp6I | CCWGG | 1 cut(s) | 167 |
| PspGI | CCWGG | 1 cut(s) | 167 |
| PspPI | GGNCC | 2 cut(s) | 124, 408 |
| RsaI | GTAC | 2 cut(s) | 5, 71 |
| RsaNI | GTAC | 2 cut(s) | 4, 70 |
| RseI | CAYNNNNRTG | 1 cut(s) | 179 |
| SaqAI | TTAA | 1 cut(s) | 261 |
| SatI | GCNGC | 1 cut(s) | 16 |
| Sau3AI | GATC | 2 cut(s) | 245, 469 |
| Sau96I | GGNCC | 2 cut(s) | 124, 408 |
| ScrFI | CCNGG | 2 cut(s) | 127, 169 |
| SetI | ASST | 5 cut(s) | 27, 42, 227, 321, 457 |
| SfaNI | GCATC | 3 cut(s) | 19, 349, 465 |
| SinI | GGWCC | 1 cut(s) | 408 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 179 |
| SmlI | CTYRAG | 1 cut(s) | 479 |
| SmoI | CTYRAG | 1 cut(s) | 479 |
| Sse9I | AATT | 1 cut(s) | 64 |
| SsiI | CCGC | 4 cut(s) | 15, 241, 278, 356 |
| SspMI | CTAG | 3 cut(s) | 363, 456, 525 |
| StyD4I | CCNGG | 2 cut(s) | 125, 167 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaqI | TCGA | 1 cut(s) | 375 |
| TasI | AATT | 1 cut(s) | 64 |
| TatI | WGTACW | 2 cut(s) | 3, 69 |
| TauI | GCSGC | 1 cut(s) | 18 |
| TfiI | GAWTC | 1 cut(s) | 112 |
| Tru1I | TTAA | 1 cut(s) | 261 |
| Tru9I | TTAA | 1 cut(s) | 261 |
| TscAI | CASTG | 3 cut(s) | 347, 420, 498 |
| TspDTI | ATGAA | 1 cut(s) | 461 |
| TspRI | CASTG | 3 cut(s) | 347, 420, 498 |
| VpaK11BI | GGWCC | 1 cut(s) | 408 |
| XapI | RAATTY | 1 cut(s) | 64 |
| XspI | CTAG | 3 cut(s) | 363, 456, 525 |