RchiOBHm_Chr1g0327151

THO complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006099
Physical Location & Seq
Forward (+)
15804281 .. 15813947
9667 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1839 bp
ATGGAAGTGTTCAGAACTGCGATACTGCAACCAGGCCCTCCTGAAACCTTTGCATTACAGACGGTTCAACAAGTTATAAAGCCTCAGAAAGGGACCAAGTTAGTGCAAGATGAGAATCAACTGTTGGAAAATATCCTCCGGACATTGCTACAGGAACTAGTGTCTTCTGCAGTGCAGTCTGGGGAGCAGATAATGCAGTATGGTCAATCAATTGATGATGGAGAATCTACAAGAGGACATATTCCACGTCTTCTAGATGTTGTGCTGTATCTTTGTGAGAAAGAGCACGTGGAAGGTGGCATGATATTTCAGCTATTGGAAGACTTGACAGAGATGTCTACGATGAGAAACTGCAAAGACGTTTTCGGTTATATAGAGAGTAAGCAGGATATATTAGGAAAGCAAGAGCTTTTTGCCAGAGGAAAACTTGTGATGTTGAGAACATGCAATCAACTTCTTCGTCGTCTATCAAAGGCAAATGACGTGGTTTTTTGTGGACGAATTCTAATGTTTCTAGCACACTTTTTCCCATTGTCTGAGCGCTCAGCTGTGAATATCAAAGGAGTTTTTAACACATCTAATGAAACGAAGTATGAGAAAGATGCCCCTGATGGAATATCCATTGATTTCAACTTCTACAAGACCTTCTGGAGCTTACAGGAACACTTTTGTAACCCTCCTTCCTTAACTGTTGCTCCTACAAAGTGGCAGAAATTTACATCCAGTTTAATGGTTGTCCTAAATACCTTTGAAGCTCAACCATTAAGTGATGAAGAGGGAGATGCCAATAATTTGGAGGAGTCAGCAAATTTCAGCATAAAGTATCTTACAAGTAGTAAGCTGATGGGTTTGGAGTTAAAGGATCCGAGTTTCCGACGACACATTCTTGTGCAGTGCCTCATATTGTTCGATTATCTGAAGGCCCCAGGAAAAAGTGAAAAAGATTTGCCTTCTGAAAGCATGAAAGAAGAAATAAATTCTTATGAGCAGCATGTGAAGAAACTGCTTAAAATGACTCCACCAAAGGGGGAAAGTTTTCTTAATAAAATTGAGCATATATTAGAACGTGAAAAGAATTGGGTATGGTGGAAACGTGATGGTTGCCCGCCATTTGAGAAGCAGCCAATAGAGAAGAAAACGGTTCAAGATGGAGCCAAAAAGCGAAAGCCGAGGTGGAGATTGGGAAATAAAGAACTCTCCCAGTTGTGGAAGTGGGCAGATCAGAATCCGAATGCTTTAACTGATCCTCAACGTCTTCAGACCCCTGCCATCACTGAGTATTGGAAACCCTTGGCTGAGGACATGGATCCAGCAGCTGGAATAGAAGCTGAATATCACCACAAAAATAACCGAGTTTACTGCTGGAAAGGTCTTCGATTTTCAGCTAGACAAGACTTGGAAGGATTTTCTAAATTTACTGAATATGGTATTGAAGGAGTGGTACCTCTAGAACTTCTGCCTCCTGAAGAACGTGCTAAATACACTCCTAAACCAAATGACAGGTCCAAACGCGCTAGAAAGGAAGATACAAAGGGTGCTGCGCATCAAGTAGAAGAAAATCAGATGGCAACAGCTGCAACCGAGGTAGATGGTGAAGGACTCAGAACTGATGTTGGGGCCTTTGTGGCTCCATTGGACACTGATAACACCGCCACGGTTGGCAATACGTCCCAAGGTAGCAGTCCAATGGCAGATGAACATCAGAAGCAAAGTTCTGATACTGATGGTGGTCAAGAGGCAGGGCAGTTGGAAGACGATGCTGAGGTGGATGCCGAGGGGGATGCCGGGATGATTGATGGAGAGATGGAACCGGAGGTTGATTTAGATGCAGTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0030422 GO:0031047 GO:0031050 GO:0031503 GO:0032870 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035556 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699
KEGG Pathways
Metabolic & Signaling
ko03013 ko03040 map03013 map03040
Pfam Domains
Protein Families
efThoc1

Protein Analysis

612

Amino Acids

69.32

Weight (kDa)

5.09

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
efThoc1 PF11957 83 - 497 1.3e-98 THO complex subunit 1 transcription elongation factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AasI GACNNNNNNGTC 1 cut(s) 334
Acc16I TGCGCA 1 cut(s) 1542
Acc65I GGTACC 1 cut(s) 1441
AccB1I GGYRCC 1 cut(s) 1441
AccB7I CCANNNNNTGG 1 cut(s) 1316
AccI GTMKAC 1 cut(s) 338
AccII CGCG 1 cut(s) 1512
AccIII TCCGGA 1 cut(s) 138
AciI CCGC 2 cut(s) 1106, 1650
AclWI GGATC 5 cut(s) 857, 870, 1238, 1301, 1314
AcsI RAATTY 5 cut(s) 501, 713, 808, 976, 1412
AcuI CTGAAG 3 cut(s) 938, 1241, 1485
AcvI CACGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 1443
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
AgsI TTSAA 5 cut(s) 68, 631, 752, 1145, 1433
AhlI ACTAGT 1 cut(s) 157
AjiI CACGTC 2 cut(s) 248, 484
AjnI CCWGG 2 cut(s) 31, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 5 cut(s) 857, 870, 1238, 1301, 1314
AlwNI CAGNNNCTG 1 cut(s) 1316
Aor13HI TCCGGA 1 cut(s) 138
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 3 cut(s) 34, 921, 1617
ApeKI GCWGC 5 cut(s) 988, 1120, 1313, 1538, 1574
ApoI RAATTY 5 cut(s) 501, 713, 808, 976, 1412
ArsI GACNNNNNNTTYG 2 cut(s) 1487, 1519
Asp700I GAANNNNTTC 1 cut(s) 1035
Asp718I GGTACC 1 cut(s) 1441
AspLEI GCGC 3 cut(s) 543, 1514, 1543
AspS9I GGNCC 5 cut(s) 35, 93, 922, 1503, 1617
AsuC2I CCSGG 1 cut(s) 1786
AsuHPI GGTGA 2 cut(s) 1328, 1604
AvaII GGWCC 2 cut(s) 93, 1503
BamHI GGATCC 2 cut(s) 862, 1306
BanI GGYRCC 1 cut(s) 1441
BarI GAAGNNNNNNTAC 4 cut(s) 664, 696, 1425, 1457
BbrPI CACGTG 1 cut(s) 289
BbsI GAAGAC 6 cut(s) 156, 242, 327, 1247, 1364, 1758
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 2 cut(s) 1296, 1761
BbvI GCAGC 5 cut(s) 1000, 1132, 1325, 1525, 1561
BcgI CGANNNNNNTGC 4 cut(s) 1341, 1375, 1763, 1797
BciT130I CCWGG 2 cut(s) 33, 927
BcnI CCSGG 1 cut(s) 1786
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 6 cut(s) 158, 254, 515, 1386, 1448, 1515
BfmI CTRYAG 2 cut(s) 149, 168
BfoI RGCGCY 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 1625
BisI GCNGC 5 cut(s) 989, 1121, 1314, 1539, 1575
BlpI GCTNAGC 1 cut(s) 544
BlsI GCNGC 5 cut(s) 990, 1122, 1315, 1540, 1576
Bme1390I CCNGG 3 cut(s) 33, 927, 1786
Bme18I GGWCC 2 cut(s) 93, 1503
BmgBI CACGTC 2 cut(s) 248, 484
BmgT120I GGNCC 5 cut(s) 35, 93, 922, 1503, 1617
BmiI GGNNCC 9 cut(s) 94, 864, 924, 1153, 1308, 1443, 1618, 1629, 1809
BmrFI CCNGG 3 cut(s) 33, 927, 1786
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 7 cut(s) 592, 772, 1552, 1747, 1759, 1771, 1816
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 6 cut(s) 156, 242, 327, 1247, 1364, 1758
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 2 cut(s) 1296, 1761
Bpu1102I GCTNAGC 1 cut(s) 544
BpuMI CCSGG 1 cut(s) 1786
BsaAI YACGTR 1 cut(s) 289
BsaBI GATNNNNATC 3 cut(s) 114, 1224, 1698
BsaJI CCNNGG 7 cut(s) 925, 1169, 1290, 1581, 1653, 1672, 1773
BsaWI WCCGGW 2 cut(s) 138, 1810
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
Bse1I ACTGG 2 cut(s) 723, 1201
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 3 cut(s) 114, 1224, 1698
BseAI TCCGGA 1 cut(s) 138
BseBI CCWGG 2 cut(s) 33, 927
BseDI CCNNGG 7 cut(s) 925, 1169, 1290, 1581, 1653, 1672, 1773
BseGI GGATG 4 cut(s) 719, 1774, 1786, 1794
BseJI GATNNNNATC 3 cut(s) 114, 1224, 1698
BseLI CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 7 cut(s) 98, 528, 558, 1266, 1287, 1615, 1752
BseNI ACTGG 2 cut(s) 723, 1201
BseRI GAGGAG 1 cut(s) 812
BseXI GCAGC 5 cut(s) 1000, 1132, 1325, 1525, 1561
BsgI GTGCAG 2 cut(s) 194, 911
Bsh1236I CGCG 1 cut(s) 1512
BshFI GGCC 3 cut(s) 36, 923, 1619
BshNI GGYRCC 1 cut(s) 1441
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 139, 1785, 1811
BslFI GGGAC 2 cut(s) 106, 1654
BslI CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
BsmFI GGGAC 2 cut(s) 106, 1654
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 3 cut(s) 36, 923, 1619
Bsp1286I GDGCHC 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 138
Bsp143I GATC 4 cut(s) 862, 1219, 1243, 1306
Bsp1720I GCTNAGC 1 cut(s) 544
BspACI CCGC 2 cut(s) 1106, 1650
BspANI GGCC 3 cut(s) 36, 923, 1619
BspCNI CTCAG 7 cut(s) 97, 529, 557, 1267, 1288, 1614, 1753
BspEI TCCGGA 1 cut(s) 138
BspFNI CGCG 1 cut(s) 1512
BspLI GGNNCC 9 cut(s) 94, 864, 924, 1153, 1308, 1443, 1618, 1629, 1809
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 5 cut(s) 857, 870, 1238, 1301, 1314
BspT107I GGYRCC 1 cut(s) 1441
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 2 cut(s) 723, 1201
BssECI CCNNGG 7 cut(s) 925, 1169, 1290, 1581, 1653, 1672, 1773
BssMI GATC 4 cut(s) 862, 1219, 1243, 1306
BssT1I CCWWGG 2 cut(s) 1290, 1672
Bst2UI CCWGG 2 cut(s) 33, 927
Bst4CI ACNGT 5 cut(s) 64, 123, 691, 1141, 1657
Bst6I CTCTTC 1 cut(s) 768
BstAPI GCANNNNNTGC 2 cut(s) 193, 1574
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 1106
BstDEI CTNAG 7 cut(s) 84, 537, 544, 1275, 1296, 1601, 1761
BstDSI CCRYGG 1 cut(s) 1653
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 4 cut(s) 719, 1774, 1786, 1794
BstFNI CGCG 1 cut(s) 1512
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 3 cut(s) 543, 1514, 1543
BstKTI GATC 4 cut(s) 865, 1222, 1246, 1309
BstMBI GATC 4 cut(s) 862, 1219, 1243, 1306
BstMWI GCNNNNNNNGC 3 cut(s) 193, 1574, 1625
BstNI CCWGG 2 cut(s) 33, 927
BstNSI RCATGY 2 cut(s) 447, 995
BstSCI CCNGG 3 cut(s) 31, 925, 1784
BstSFI CTRYAG 2 cut(s) 149, 168
BstUI CGCG 1 cut(s) 1512
BstV1I GCAGC 5 cut(s) 1000, 1132, 1325, 1525, 1561
BstV2I GAAGAC 6 cut(s) 156, 242, 327, 1247, 1364, 1758
BstX2I RGATCY 2 cut(s) 862, 1306
BstXI CCANNNNNNTGG 2 cut(s) 730, 793
BstYI RGATCY 2 cut(s) 862, 1306
BsuRI GGCC 3 cut(s) 36, 923, 1619
BtgI CCRYGG 1 cut(s) 1653
BtrI CACGTC 2 cut(s) 248, 484
BtsCI GGATG 4 cut(s) 719, 1774, 1786, 1794
BtsI GCAGTG 2 cut(s) 177, 899
BtsIMutI CAGTG 4 cut(s) 177, 899, 1272, 1638
Cac8I GCNNGC 1 cut(s) 1106
CaiI CAGNNNCTG 1 cut(s) 1316
CfoI GCGC 3 cut(s) 543, 1514, 1543
Cfr13I GGNCC 5 cut(s) 35, 93, 922, 1503, 1617
Csp6I GTAC 1 cut(s) 1442
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 5 cut(s) 301, 444, 961, 992, 1303
CviQI GTAC 1 cut(s) 1442
DdeI CTNAG 7 cut(s) 84, 537, 544, 1275, 1296, 1601, 1761
DpnI GATC 4 cut(s) 864, 1221, 1245, 1308
DpnII GATC 4 cut(s) 862, 1219, 1243, 1306
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Eco130I CCWWGG 2 cut(s) 1290, 1672
Eco47I GGWCC 2 cut(s) 93, 1503
Eco47III AGCGCT 1 cut(s) 542
Eco57I CTGAAG 3 cut(s) 938, 1241, 1485
Eco72I CACGTG 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoO109I RGGNCCY 3 cut(s) 35, 922, 1617
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 2 cut(s) 31, 925
EcoT14I CCWWGG 2 cut(s) 1290, 1672
ErhI CCWWGG 2 cut(s) 1290, 1672
FaeI CATG 5 cut(s) 304, 447, 964, 995, 1306
FaqI GGGAC 2 cut(s) 106, 1654
FatI CATG 5 cut(s) 300, 443, 960, 991, 1302
FauI CCCGC 1 cut(s) 1113
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 5 cut(s) 989, 1121, 1314, 1539, 1575
FokI GGATG 4 cut(s) 706, 1781, 1793, 1801
Fsp4HI GCNGC 5 cut(s) 989, 1121, 1314, 1539, 1575
FspBI CTAG 6 cut(s) 158, 254, 515, 1386, 1448, 1515
FspI TGCGCA 1 cut(s) 1542
GlaI GCGC 3 cut(s) 542, 1513, 1542
GluI GCNGC 5 cut(s) 989, 1121, 1314, 1539, 1575
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 3 cut(s) 36, 923, 1619
HapII CCGG 3 cut(s) 139, 1785, 1811
HhaI GCGC 3 cut(s) 543, 1514, 1543
Hin1II CATG 5 cut(s) 304, 447, 964, 995, 1306
Hin6I GCGC 3 cut(s) 541, 1512, 1541
HinP1I GCGC 3 cut(s) 541, 1512, 1541
HinfI GANTC 6 cut(s) 115, 224, 800, 1015, 1225, 1599
HpaII CCGG 3 cut(s) 139, 1785, 1811
HphI GGTGA 2 cut(s) 1328, 1604
Hpy166II GTNNAC 3 cut(s) 339, 497, 1357
Hpy188III TCNNGA 8 cut(s) 41, 139, 254, 649, 1145, 1448, 1463, 1733
Hpy8I GTNNAC 3 cut(s) 339, 497, 1357
Hpy99I CGWCG 2 cut(s) 465, 879
HpyAV CCTTC 8 cut(s) 287, 655, 690, 913, 960, 1394, 1427, 1589
HpyCH4III ACNGT 5 cut(s) 64, 123, 691, 1141, 1657
HpyCH4IV ACGT 9 cut(s) 247, 288, 360, 483, 1066, 1093, 1252, 1471, 1667
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 1574, 1625
HpyF3I CTNAG 7 cut(s) 84, 537, 544, 1275, 1296, 1601, 1761
HpySE526I ACGT 9 cut(s) 247, 288, 360, 483, 1066, 1093, 1252, 1471, 1667
Hsp92II CATG 5 cut(s) 304, 447, 964, 995, 1306
HspAI GCGC 3 cut(s) 541, 1512, 1541
Kpn2I TCCGGA 1 cut(s) 138
KpnI GGTACC 1 cut(s) 1445
Kzo9I GATC 4 cut(s) 862, 1219, 1243, 1306
LmnI GCTCC 5 cut(s) 184, 651, 700, 1151, 1633
Lsp1109I GCAGC 5 cut(s) 1000, 1132, 1325, 1525, 1561
LweI GCATC 7 cut(s) 592, 772, 1552, 1747, 1759, 1771, 1816
MaeI CTAG 6 cut(s) 158, 254, 515, 1386, 1448, 1515
MaeII ACGT 9 cut(s) 247, 288, 360, 483, 1066, 1093, 1252, 1471, 1667
MaeIII GTNAC 1 cut(s) 671
MalI GATC 4 cut(s) 864, 1221, 1245, 1308
MboI GATC 4 cut(s) 862, 1219, 1243, 1306
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 2 cut(s) 862, 1306
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 9 cut(s) 210, 501, 713, 790, 808, 976, 1047, 1075, 1412
MlyI GAGTC 3 cut(s) 809, 1009, 1593
MmeI TCCRAC 3 cut(s) 105, 898, 1728
MroI TCCGGA 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 1035
MseI TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
MslI CAYNNNNRTG 1 cut(s) 887
MspA1I CMGCKG 3 cut(s) 548, 1316, 1574
MspI CCGG 3 cut(s) 139, 1785, 1811
MspR9I CCNGG 3 cut(s) 33, 927, 1786
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 2 cut(s) 33, 927
MvnI CGCG 1 cut(s) 1512
MwoI GCNNNNNNNGC 3 cut(s) 193, 1574, 1625
NciI CCSGG 1 cut(s) 1786
NdeII GATC 4 cut(s) 862, 1219, 1243, 1306
NlaIII CATG 5 cut(s) 304, 447, 964, 995, 1306
NlaIV GGNNCC 9 cut(s) 94, 864, 924, 1153, 1308, 1443, 1618, 1629, 1809
NmeAIII GCCGAG 2 cut(s) 1194, 1798
NsbI TGCGCA 1 cut(s) 1542
NspI RCATGY 2 cut(s) 447, 995
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 3 cut(s) 115, 224, 1225
PflMI CCANNNNNTGG 1 cut(s) 1316
PkrI GCNGC 5 cut(s) 990, 1122, 1315, 1540, 1576
PleI GAGTC 3 cut(s) 808, 1009, 1593
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
PpsI GAGTC 3 cut(s) 808, 1009, 1593
Ppu21I YACGTR 1 cut(s) 289
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 31, 925
PspCI CACGTG 1 cut(s) 289
PspGI CCWGG 2 cut(s) 31, 925
PspN4I GGNNCC 9 cut(s) 94, 864, 924, 1153, 1308, 1443, 1618, 1629, 1809
PspPI GGNCC 5 cut(s) 35, 93, 922, 1503, 1617
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 1316
PsuI RGATCY 2 cut(s) 862, 1306
PvuII CAGCTG 3 cut(s) 548, 1316, 1574
RsaI GTAC 1 cut(s) 1443
RsaNI GTAC 1 cut(s) 1442
RseI CAYNNNNRTG 1 cut(s) 887
SaqAI TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
SatI GCNGC 5 cut(s) 989, 1121, 1314, 1539, 1575
Sau3AI GATC 4 cut(s) 862, 1219, 1243, 1306
Sau96I GGNCC 5 cut(s) 35, 93, 922, 1503, 1617
SchI GAGTC 3 cut(s) 809, 1009, 1593
ScrFI CCNGG 3 cut(s) 33, 927, 1786
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 7 cut(s) 592, 772, 1552, 1747, 1759, 1771, 1816
SfcI CTRYAG 2 cut(s) 149, 168
SinI GGWCC 2 cut(s) 93, 1503
SmiMI CAYNNNNRTG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 9 cut(s) 210, 501, 713, 790, 808, 976, 1047, 1075, 1412
SsiI CCGC 2 cut(s) 1106, 1650
SspMI CTAG 6 cut(s) 158, 254, 515, 1386, 1448, 1515
StyD4I CCNGG 3 cut(s) 31, 925, 1784
StyI CCWWGG 2 cut(s) 1290, 1672
TaaI ACNGT 5 cut(s) 64, 123, 691, 1141, 1657
TaiI ACGT 9 cut(s) 250, 291, 363, 486, 1069, 1096, 1255, 1474, 1670
TaqI TCGA 2 cut(s) 909, 1375
TasI AATT 9 cut(s) 210, 501, 713, 790, 808, 976, 1047, 1075, 1412
TfiI GAWTC 3 cut(s) 115, 224, 1225
Tru1I TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
Tru9I TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
TscAI CASTG 4 cut(s) 177, 899, 1279, 1645
TseI GCWGC 5 cut(s) 988, 1120, 1313, 1538, 1574
TspDTI ATGAA 4 cut(s) 597, 786, 977, 1710
TspRI CASTG 4 cut(s) 177, 899, 1279, 1645
Van91I CCANNNNNTGG 1 cut(s) 1316
VpaK11BI GGWCC 2 cut(s) 93, 1503
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 5 cut(s) 501, 713, 808, 976, 1412
XbaI TCTAGA 2 cut(s) 253, 1447
XceI RCATGY 2 cut(s) 447, 995
XmiI GTMKAC 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 6 cut(s) 158, 254, 515, 1386, 1448, 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.