Rorug01G0063800

THO complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006099
Physical Location & Seq
Forward (+)
10455510 .. 10456133
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0063800.1

Sequence Viewer

Length: 624 bp
ATGGCTTCTGCAATCTCCAAGAATAAGAAAAACCACCAGGCTGCTGTTAAGGCACTAGACGATGCAGAGGCTTATTTCAAGCTCCAAAAGTTGGACTCTGCAATCAAAGAGGCTATGCAAGCGAAAAACCTCGACCCTAATTTGCCCAACGTCGACAATTTTATCACAGCATACAAGATTCATAGGGCCATGTCCTCCAAGAAAAACTGGTATGTGATTCTTGGCATCCCCGAATGTACGCATTTATTAACTATCAATAAAAGATATAAGGAATTGGCACTCGTGGTGCACCCTGATAAGAATGTCTCTGCTGCTGCTGAAGGTGCTTTCAAGCATGTTAAAGCTGCCTTGGACTTTCTCTCTGACCCGGTGAGAAAGAAGGATTACGACAGGTCTTTAATGTCCAAAAAGAAGACGTACGCTGCTGCTGCGGCAAGGAAAGCCACCGATTATAAGAATGCTGCGGCTGCTGCTGCAAAGGAGGCTGAGGCTGCTGCTGCCAGGAGTGAGATTAATGCACGCAAACGACGTTCTAGTGCGCCCATGAGTGAACTCGAGTATGGCATAAATCTAATAATGAAATACTCGCCAAAATACATGGAGCCAAAGTTCTGTGTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0030422 GO:0031047 GO:0031050 GO:0031503 GO:0032870 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035556 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699
KEGG Pathways
Metabolic & Signaling
ko03013 ko03040 map03013 map03040
Pfam Domains
Protein Families
efThoc1

Protein Analysis

207

Amino Acids

23.1

Weight (kDa)

9.68

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 130 2.3e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 91
AccI GTMKAC 1 cut(s) 153
AciI CCGC 2 cut(s) 431, 464
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 2 cut(s) 238, 419
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 79, 331
AjnI CCWGG 2 cut(s) 36, 500
AloI GAACNNNNNNTCC 1 cut(s) 593
AluBI AGCT 2 cut(s) 82, 344
AluI AGCT 2 cut(s) 82, 344
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 310
Alw44I GTGCAC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 1 cut(s) 186
ApaLI GTGCAC 1 cut(s) 287
AseI ATTAAT 1 cut(s) 513
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 291
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 291
BbvCI CCTCAGC 1 cut(s) 486
BciT130I CCWGG 2 cut(s) 38, 502
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 2 cut(s) 56, 534
Bme1390I CCNGG 3 cut(s) 38, 368, 502
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 3 cut(s) 38, 368, 502
BmsI GCATC 2 cut(s) 52, 234
BpiI GAAGAC 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 2 cut(s) 38, 502
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 291
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 368
BsiWI CGTACG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 291
BspACI CCGC 2 cut(s) 431, 464
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 603
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 348
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 38, 502
BstC8I GCNNGC 2 cut(s) 120, 520
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 310
BstNI CCWGG 2 cut(s) 38, 502
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 36, 366, 500
BstSLI GKGCMC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 120, 520
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 237, 418
CviAII CATG 4 cut(s) 190, 335, 544, 598
CviQI GTAC 2 cut(s) 237, 418
DdeI CTNAG 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 554
EcoRII CCWGG 2 cut(s) 36, 500
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 4 cut(s) 193, 338, 547, 601
FatI CATG 4 cut(s) 189, 334, 543, 597
FblI GTMKAC 1 cut(s) 153
FokI GGATG 1 cut(s) 212
FspBI CTAG 2 cut(s) 56, 534
GlaI GCGC 1 cut(s) 540
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 541
Hin1II CATG 4 cut(s) 193, 338, 547, 601
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 95, 178, 217
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 154, 289, 551
Hpy188I TCNGA 1 cut(s) 364
Hpy8I GTNNAC 3 cut(s) 154, 289, 551
Hpy99I CGWCG 2 cut(s) 155, 531
HpyAV CCTTC 2 cut(s) 314, 373
HpyCH4IV ACGT 3 cut(s) 150, 416, 529
HpyCH4V TGCA 7 cut(s) 11, 65, 101, 118, 289, 476, 518
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 3 cut(s) 150, 416, 529
Hsp92II CATG 4 cut(s) 193, 338, 547, 601
HspAI GCGC 1 cut(s) 539
LmnI GCTCC 2 cut(s) 87, 601
LpnPI CCDG 9 cut(s) 23, 50, 193, 306, 376, 381, 487, 514, 604
LweI GCATC 2 cut(s) 52, 234
MaeI CTAG 2 cut(s) 56, 534
MaeII ACGT 3 cut(s) 150, 416, 529
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 139, 157, 272
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 61, 103, 140, 205, 475, 481
MseI TTAA 5 cut(s) 48, 248, 339, 398, 513
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 3 cut(s) 38, 368, 502
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 38, 502
NciI CCSGG 1 cut(s) 368
NlaIII CATG 4 cut(s) 193, 338, 547, 601
NlaIV GGNNCC 1 cut(s) 603
NspI RCATGY 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 554
PcsI WCGNNNNNNNCGW 1 cut(s) 526
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 178, 217
Pfl23II CGTACG 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 91
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 513
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 36, 500
PspGI CCWGG 2 cut(s) 36, 500
PspLI CGTACG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 186
PspXI VCTCGAGB 1 cut(s) 554
RsaI GTAC 2 cut(s) 238, 419
RsaNI GTAC 2 cut(s) 237, 418
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 5 cut(s) 48, 248, 339, 398, 513
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 38, 368, 502
SduI GDGCHC 1 cut(s) 291
SetI ASST 8 cut(s) 84, 132, 153, 325, 346, 395, 419, 532
SfaNI GCATC 2 cut(s) 52, 234
Sfr274I CTCGAG 1 cut(s) 554
SlaI CTCGAG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 3 cut(s) 139, 157, 272
SsiI CCGC 2 cut(s) 431, 464
SspMI CTAG 2 cut(s) 56, 534
StyD4I CCNGG 3 cut(s) 36, 366, 500
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 3 cut(s) 153, 419, 532
TaqI TCGA 3 cut(s) 132, 153, 555
TasI AATT 3 cut(s) 139, 157, 272
TauI GCSGC 2 cut(s) 434, 467
TfiI GAWTC 2 cut(s) 178, 217
Tru1I TTAA 5 cut(s) 48, 248, 339, 398, 513
Tru9I TTAA 5 cut(s) 48, 248, 339, 398, 513
TspDTI ATGAA 2 cut(s) 170, 593
Van91I CCANNNNNTGG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 513
XceI RCATGY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 2 cut(s) 56, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.