Rh1BG064300

THO complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
9683161 .. 9698516
15356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG064300.1

Sequence Viewer

Length: 1419 bp
ATGGAAGTGTTCAGAACTGCGATACTGCAACCAGGACCTCCTGAAACCTTTGCATTACAGACGGTTCAGCAAGTTATAAAGCCTCAGAAAGGGACCAAGTTAGTGCAAGATGAGAATCAACTGTTGGAAAATATCCTCCGGACATTGCTACAGGAACTAGTGTCTTCTGCAGTACAGTCCGGGGAGCAGATAATGCAGTATGGTCAATCAATTGATGATGGAGAAGCTGCAAGAGGACATATTCCACGTCTTCTAGATGTCGTGCTGTATCTTTGTGAGAAAGAGCACGTGGAAGGTGGCATGATATTTCAGCTACTGGAAGACTTGACAGAGATGTCTACGATGAGAAACTGCAAAGACGTTTTCGGTTATATAGAGAGTAAGCAAGATATATTAGGAAAGCAAGAGCTTTTTGCCAGAGGAAAACTTGTGATGTTGAGAACATGCAATCAACTTCTTCGTCGTCTATCAAAGGCAAATGACGTGGTTTTTTGCGGACGAATTCTAATGTTTCTAGCACACTTTTTCCCATTGTCTGAGCGCTCAGCTGTGAATATCAAAGGAGTTTTTAACACATCTAATGAAACGAAGTATGAGAAAGATGCCCCTGATGGAATATCCATCGATTTCAACTTCTACAAGACCTTCTGGAGCTTACAGGAACACTTTTGTAACCCTCCTTCCTTAACTGTTGCTCCTACAAAGTGGCAGAAATTTTCATCCAGTTTAATGGTTGTCCTAAATACCTTTGAAGCTCAACCATTAAGTGATGAAGAGGGAGATGCCAATAATTTGGAGGAGTCAGCAAATTTCAGCATAAAGTATCTTACAAGTAGTAAGCTGATGGGTTTGGAGTTAAAGGATCCGAGTTTCCGACGACACATTCTTGTGCAGTGCCTCATATTGTTCGATTATCTGAAGGCCCCAGGAAAAAGTGAAAAAGATTTGCCTTCTGAAAGCATGAAAGAAGAAATAAATTCTTATGAGCAGCATGTGAAGAAACTGCTTAAAATGACTCCACCAAAGGGGGAAAGTTTTCTTAATAAAATTGAGCATATATTAGAACGTGAAAAGAATTGGGTATGGTGGAAACGTGATGGTTGCCCTCCATTTGAGAAGCAGCCAATAGAGAAGAAAACGGTTCAAGATGGAGCCAAAAAGCGAAAGCCGAGGTGGAGATTGGGAAATAAAGAACTCTCCCAGTTGTGGAAGTGGGCAGATCAGAATCCGAATGCTTTAACTGATCCTCAATGTCTTCAGACCCCTGCCATCTCTGAGTATTGGAAACCCTTGGCTGAGGACATGGATCCAGCAGCTGGAATAGAAGCTGAATATCACCACAAAAATAACCGAGTTTACTGCTGGAAAGGTCTTCGATTTTCAGCTAGACAAGACTTGGAAGGATTTTCTAAAGTATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

54.36

Weight (kDa)

6.55

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
efThoc1 PF11957 83 - 472 7.4e-96 THO complex subunit 1 transcription elongation factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AasI GACNNNNNNGTC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 1316
AccI GTMKAC 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 138
AciI CCGC 1 cut(s) 495
AclWI GGATC 5 cut(s) 857, 870, 1238, 1301, 1314
AcsI RAATTY 4 cut(s) 501, 713, 808, 976
AcuI CTGAAG 2 cut(s) 938, 1241
AcvI CACGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 174
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
AgsI TTSAA 3 cut(s) 631, 752, 1145
AhlI ACTAGT 1 cut(s) 157
AjiI CACGTC 2 cut(s) 248, 484
AjnI CCWGG 2 cut(s) 31, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 5 cut(s) 857, 870, 1238, 1301, 1314
AlwNI CAGNNNCTG 2 cut(s) 316, 1316
Aor13HI TCCGGA 1 cut(s) 138
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 1 cut(s) 921
ApeKI GCWGC 4 cut(s) 227, 988, 1120, 1313
ApoI RAATTY 4 cut(s) 501, 713, 808, 976
Asp700I GAANNNNTTC 1 cut(s) 1035
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 3 cut(s) 35, 93, 922
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 1328
AvaII GGWCC 2 cut(s) 35, 93
BamHI GGATCC 2 cut(s) 862, 1306
BarI GAAGNNNNNNTAC 2 cut(s) 664, 696
BbrPI CACGTG 1 cut(s) 289
BbsI GAAGAC 5 cut(s) 156, 242, 327, 1247, 1364
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 1296
BbvI GCAGC 4 cut(s) 214, 1000, 1132, 1325
BccI CCATC 7 cut(s) 212, 605, 629, 838, 1091, 1142, 1277
BcgI CGANNNNNNTGC 2 cut(s) 1341, 1375
BciT130I CCWGG 2 cut(s) 33, 927
BcnI CCSGG 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 4 cut(s) 158, 254, 515, 1386
BfmI CTRYAG 2 cut(s) 149, 168
BfoI RGCGCY 1 cut(s) 544
BisI GCNGC 4 cut(s) 228, 989, 1121, 1314
BlpI GCTNAGC 1 cut(s) 544
BlsI GCNGC 4 cut(s) 229, 990, 1122, 1315
Bme1390I CCNGG 3 cut(s) 33, 181, 927
Bme18I GGWCC 2 cut(s) 35, 93
BmgBI CACGTC 2 cut(s) 248, 484
BmgT120I GGNCC 3 cut(s) 35, 93, 922
BmiI GGNNCC 5 cut(s) 94, 864, 924, 1153, 1308
BmrFI CCNGG 3 cut(s) 33, 181, 927
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 2 cut(s) 592, 772
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 5 cut(s) 156, 242, 327, 1247, 1364
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 1 cut(s) 1296
Bpu1102I GCTNAGC 1 cut(s) 544
BpuMI CCSGG 1 cut(s) 181
Bsa29I ATCGAT 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 289
BsaBI GATNNNNATC 2 cut(s) 114, 1224
BsaJI CCNNGG 4 cut(s) 180, 925, 1169, 1290
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
Bse1I ACTGG 3 cut(s) 321, 723, 1201
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 2 cut(s) 114, 1224
BseAI TCCGGA 1 cut(s) 138
BseBI CCWGG 2 cut(s) 33, 927
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 180, 925, 1169, 1290
BseGI GGATG 1 cut(s) 719
BseJI GATNNNNATC 2 cut(s) 114, 1224
BseLI CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 5 cut(s) 98, 528, 558, 1266, 1287
BseNI ACTGG 3 cut(s) 321, 723, 1201
BseRI GAGGAG 1 cut(s) 812
BseXI GCAGC 4 cut(s) 214, 1000, 1132, 1325
BsgI GTGCAG 1 cut(s) 911
BshFI GGCC 1 cut(s) 923
BshVI ATCGAT 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 139, 180
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 4 cut(s) 89, 1025, 1206, 1316
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 1 cut(s) 923
Bsp1286I GDGCHC 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 138
Bsp143I GATC 4 cut(s) 862, 1219, 1243, 1306
Bsp1720I GCTNAGC 1 cut(s) 544
BspACI CCGC 1 cut(s) 495
BspANI GGCC 1 cut(s) 923
BspCNI CTCAG 5 cut(s) 97, 529, 557, 1267, 1288
BspDI ATCGAT 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 138
BspLI GGNNCC 5 cut(s) 94, 864, 924, 1153, 1308
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 5 cut(s) 857, 870, 1238, 1301, 1314
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 3 cut(s) 321, 723, 1201
BssECI CCNNGG 4 cut(s) 180, 925, 1169, 1290
BssMI GATC 4 cut(s) 862, 1219, 1243, 1306
BssT1I CCWWGG 1 cut(s) 1290
Bst2UI CCWGG 2 cut(s) 33, 927
Bst4CI ACNGT 5 cut(s) 64, 123, 177, 691, 1141
Bst6I CTCTTC 1 cut(s) 768
BstAPI GCANNNNNTGC 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 289
BstDEI CTNAG 5 cut(s) 84, 537, 544, 1275, 1296
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 719
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 4 cut(s) 865, 1222, 1246, 1309
BstMBI GATC 4 cut(s) 862, 1219, 1243, 1306
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 2 cut(s) 33, 927
BstNSI RCATGY 2 cut(s) 447, 995
BstSCI CCNGG 3 cut(s) 31, 179, 925
BstSFI CTRYAG 2 cut(s) 149, 168
BstV1I GCAGC 4 cut(s) 214, 1000, 1132, 1325
BstV2I GAAGAC 5 cut(s) 156, 242, 327, 1247, 1364
BstX2I RGATCY 2 cut(s) 862, 1306
BstXI CCANNNNNNTGG 2 cut(s) 730, 793
BstYI RGATCY 2 cut(s) 862, 1306
Bsu15I ATCGAT 1 cut(s) 624
BsuRI GGCC 1 cut(s) 923
BsuTUI ATCGAT 1 cut(s) 624
BtrI CACGTC 2 cut(s) 248, 484
BtsCI GGATG 1 cut(s) 719
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 1 cut(s) 899
CaiI CAGNNNCTG 2 cut(s) 316, 1316
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 3 cut(s) 35, 93, 922
ClaI ATCGAT 1 cut(s) 624
Csp6I GTAC 1 cut(s) 173
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 5 cut(s) 301, 444, 961, 992, 1303
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 5 cut(s) 84, 537, 544, 1275, 1296
DpnI GATC 4 cut(s) 864, 1221, 1245, 1308
DpnII GATC 4 cut(s) 862, 1219, 1243, 1306
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 1290
Eco47I GGWCC 2 cut(s) 35, 93
Eco47III AGCGCT 1 cut(s) 542
Eco57I CTGAAG 2 cut(s) 938, 1241
Eco72I CACGTG 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoO109I RGGNCCY 2 cut(s) 35, 922
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 2 cut(s) 31, 925
EcoT14I CCWWGG 1 cut(s) 1290
ErhI CCWWGG 1 cut(s) 1290
FaeI CATG 5 cut(s) 304, 447, 964, 995, 1306
FaqI GGGAC 1 cut(s) 106
FatI CATG 5 cut(s) 300, 443, 960, 991, 1302
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 4 cut(s) 228, 989, 1121, 1314
FokI GGATG 1 cut(s) 706
Fsp4HI GCNGC 4 cut(s) 228, 989, 1121, 1314
FspBI CTAG 4 cut(s) 158, 254, 515, 1386
GlaI GCGC 1 cut(s) 542
GluI GCNGC 4 cut(s) 228, 989, 1121, 1314
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 1 cut(s) 923
HapII CCGG 2 cut(s) 139, 180
HhaI GCGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 304, 447, 964, 995, 1306
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HinfI GANTC 4 cut(s) 115, 800, 1015, 1225
HpaII CCGG 2 cut(s) 139, 180
HphI GGTGA 1 cut(s) 1328
Hpy166II GTNNAC 2 cut(s) 339, 1357
Hpy188III TCNNGA 5 cut(s) 41, 139, 254, 649, 1145
Hpy8I GTNNAC 2 cut(s) 339, 1357
Hpy99I CGWCG 2 cut(s) 465, 879
HpyAV CCTTC 6 cut(s) 287, 655, 690, 913, 960, 1394
HpyCH4III ACNGT 5 cut(s) 64, 123, 177, 691, 1141
HpyCH4IV ACGT 6 cut(s) 247, 288, 360, 483, 1066, 1093
HpyCH4V TGCA 9 cut(s) 28, 53, 106, 170, 196, 230, 354, 447, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 5 cut(s) 84, 537, 544, 1275, 1296
HpySE526I ACGT 6 cut(s) 247, 288, 360, 483, 1066, 1093
Hsp92II CATG 5 cut(s) 304, 447, 964, 995, 1306
HspAI GCGC 1 cut(s) 541
Kpn2I TCCGGA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 862, 1219, 1243, 1306
LmnI GCTCC 4 cut(s) 184, 651, 700, 1151
Lsp1109I GCAGC 4 cut(s) 214, 1000, 1132, 1325
LweI GCATC 2 cut(s) 592, 772
MaeI CTAG 4 cut(s) 158, 254, 515, 1386
MaeII ACGT 6 cut(s) 247, 288, 360, 483, 1066, 1093
MaeIII GTNAC 1 cut(s) 671
MalI GATC 4 cut(s) 864, 1221, 1245, 1308
MboI GATC 4 cut(s) 862, 1219, 1243, 1306
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 2 cut(s) 862, 1306
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 8 cut(s) 210, 501, 713, 790, 808, 976, 1047, 1075
MlyI GAGTC 2 cut(s) 809, 1009
MmeI TCCRAC 2 cut(s) 105, 898
MroI TCCGGA 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 1035
MseI TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
MslI CAYNNNNRTG 1 cut(s) 887
MspA1I CMGCKG 2 cut(s) 548, 1316
MspI CCGG 2 cut(s) 139, 180
MspR9I CCNGG 3 cut(s) 33, 181, 927
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 2 cut(s) 33, 927
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 181
NdeII GATC 4 cut(s) 862, 1219, 1243, 1306
NlaIII CATG 5 cut(s) 304, 447, 964, 995, 1306
NlaIV GGNNCC 5 cut(s) 94, 864, 924, 1153, 1308
NmeAIII GCCGAG 1 cut(s) 1194
NspI RCATGY 2 cut(s) 447, 995
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 115, 1225
PflMI CCANNNNNTGG 1 cut(s) 1316
PkrI GCNGC 4 cut(s) 229, 990, 1122, 1315
PleI GAGTC 2 cut(s) 808, 1009
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
PpsI GAGTC 2 cut(s) 808, 1009
Ppu21I YACGTR 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 31, 925
PspCI CACGTG 1 cut(s) 289
PspGI CCWGG 2 cut(s) 31, 925
PspN4I GGNNCC 5 cut(s) 94, 864, 924, 1153, 1308
PspPI GGNCC 3 cut(s) 35, 93, 922
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 2 cut(s) 316, 1316
PsuI RGATCY 2 cut(s) 862, 1306
PvuII CAGCTG 2 cut(s) 548, 1316
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 887
SaqAI TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
SatI GCNGC 4 cut(s) 228, 989, 1121, 1314
Sau3AI GATC 4 cut(s) 862, 1219, 1243, 1306
Sau96I GGNCC 3 cut(s) 35, 93, 922
SchI GAGTC 2 cut(s) 809, 1009
ScrFI CCNGG 3 cut(s) 33, 181, 927
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 2 cut(s) 592, 772
SfcI CTRYAG 2 cut(s) 149, 168
SinI GGWCC 2 cut(s) 35, 93
SmiMI CAYNNNNRTG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 8 cut(s) 210, 501, 713, 790, 808, 976, 1047, 1075
SsiI CCGC 1 cut(s) 495
SspMI CTAG 4 cut(s) 158, 254, 515, 1386
StyD4I CCNGG 3 cut(s) 31, 179, 925
StyI CCWWGG 1 cut(s) 1290
TaaI ACNGT 5 cut(s) 64, 123, 177, 691, 1141
TaiI ACGT 6 cut(s) 250, 291, 363, 486, 1069, 1096
TaqI TCGA 3 cut(s) 624, 909, 1375
TasI AATT 8 cut(s) 210, 501, 713, 790, 808, 976, 1047, 1075
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 2 cut(s) 115, 1225
Tru1I TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
Tru9I TTAA 8 cut(s) 570, 686, 728, 764, 857, 1008, 1041, 1238
TscAI CASTG 1 cut(s) 899
TseI GCWGC 4 cut(s) 227, 988, 1120, 1313
TspDTI ATGAA 4 cut(s) 597, 708, 786, 977
TspRI CASTG 1 cut(s) 899
Van91I CCANNNNNTGG 1 cut(s) 1316
VpaK11BI GGWCC 2 cut(s) 35, 93
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 4 cut(s) 501, 713, 808, 976
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 2 cut(s) 447, 995
XmiI GTMKAC 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 4 cut(s) 158, 254, 515, 1386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.