RchiOBHm_Chr1g0328821

khg kdpg

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014787
Physical Location & Seq
Forward (+)
18258997 .. 18264543
5547 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGTTTAAGAGCTCACCACCTCCGTTGCCCTGCCGGCCACATCGCCTTAGGGTTTGTTGCTCGTCAATCCAGAAAACGTTGACTGAAGTTGATAGCTCAGGCGTCATCGCATGTCTTCGCGCCAACAGTGCAGAGCTGGCATTTGAAGCTGCTTGTGCTGCTCTTGAAGGCGGCATTTCAGTTCTTGAGATTGTGATGTCGACACCAGGTGTGTTTGAGGTTCTACAGCAGCTGGTACATATCTACCCTACGAGAGTCCTAGGAGTAGGGACAGTACTGAACATTGAGGATGCGGAAAGGGCAGTGACAGCTGGAGCCAAGTTTTTTATGAGTCCTGTTATAGTGAAGGATATTATGGATGATTTTCGGTATGGGGATGTTTTGTACATACCTGGAGTTATGACTCCAACAGAGATTTTGTCTGCCTATGATGCTGGTGCAAAAATTGTGAAGATTTATCCTGTTTCTGCATTAGGCGGCATACACTATATATCAGCCATCAAGAAACCTTTTCCTCACATCTCAATGGTTGCTTCTCAAGGCATAACAATAGGTTCAGCTGGGGAATATATTGCTAAGGGAGCATCTTCAGTTGTTTTATCAGATGCCATATTTGATAAAGAAGCAATGGGTCAAAAGAATTTCAATAGAATACATCAACTCGCGAACATGGCAGCTTTGCAGTGCAAGGAAGCAGTAGATCGGAAGAAAAACCTCATGCTGATCAATAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldolase

Protein Analysis

245

Amino Acids

26.33

Weight (kDa)

7.61

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldolase PF01081 33 - 221 5.3e-34 KDPG and KHG aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04260 FvH4_7g04260 FvH4_7g04260
malus_domestica MD02G1272300.v1.1
prunus_persica Prupe.2G048500_v2.0.a1
pyrus_communis pycom02g23290
rosa_chinensis RchiOBHm_Chr1g0328821
rosa_laevigata RLG00000029917
rosa_multiflora Rmu_sc0004856.1_g000008
rosa_roxburghii Rroxscaffold_4G00321360
rosa_rugosa Rorug01G0075900 Rorug01G0075900
rosa_samantha Rh1AG095100 Rh1BG075600 Rh1CG092200 Rh1DG098300
rosa_wichuraiana Rw1G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AccII CGCG 2 cut(s) 120, 665
AciI CCGC 3 cut(s) 171, 293, 477
AclI AACGTT 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 2 cut(s) 105, 573
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 237, 276, 386
AgsI TTSAA 3 cut(s) 146, 167, 646
AjnI CCWGG 2 cut(s) 205, 391
AluBI AGCT 8 cut(s) 12, 96, 136, 149, 232, 311, 560, 677
AluI AGCT 8 cut(s) 12, 96, 136, 149, 232, 311, 560, 677
Alw21I GWGCWC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 4 cut(s) 149, 158, 229, 674
ApoI RAATTY 1 cut(s) 640
AspA2I CCTAGG 1 cut(s) 259
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 6
AvrII CCTAGG 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 47
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 136, 145, 241, 686
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 2 cut(s) 207, 393
BclI TGATCA 1 cut(s) 723
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 34
BisI GCNGC 6 cut(s) 150, 159, 172, 230, 478, 675
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 6 cut(s) 151, 160, 173, 231, 479, 676
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 2 cut(s) 207, 393
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 207, 393
BmsI GCATC 4 cut(s) 280, 421, 593, 595
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 2 cut(s) 333, 414
Bpu10I CCTNAGC 2 cut(s) 97, 576
BpuEI CTTGAG 2 cut(s) 206, 522
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 2 cut(s) 207, 393
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 3 cut(s) 295, 364, 382
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 4 cut(s) 136, 145, 241, 686
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 120, 665
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 2 cut(s) 700, 723
Bsp68I TCGCGA 1 cut(s) 665
BspACI CCGC 3 cut(s) 171, 293, 477
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 2 cut(s) 120, 665
BspLI GGNNCC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 700, 723
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 207, 393
Bst4CI ACNGT 2 cut(s) 128, 274
BstACI GRCGYC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 35, 138
BstDEI CTNAG 3 cut(s) 47, 97, 576
BstF5I GGATG 3 cut(s) 295, 364, 382
BstFNI CGCG 2 cut(s) 120, 665
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 703, 726
BstMBI GATC 2 cut(s) 700, 723
BstNI CCWGG 2 cut(s) 207, 393
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 205, 391
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 2 cut(s) 120, 665
BstV1I GCAGC 4 cut(s) 136, 145, 241, 686
BstV2I GAAGAC 1 cut(s) 107
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 37
BtgZI GCGATG 2 cut(s) 26, 91
BtsCI GGATG 3 cut(s) 295, 364, 382
BtsI GCAGTG 2 cut(s) 309, 689
BtsIMutI CAGTG 3 cut(s) 133, 309, 689
BtuMI TCGCGA 1 cut(s) 665
Cac8I GCNNGC 2 cut(s) 35, 138
CaiI CAGNNNCTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 33
CseI GACGC 1 cut(s) 91
CsiI ACCWGGT 1 cut(s) 205
Csp6I GTAC 3 cut(s) 236, 275, 385
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 3 cut(s) 111, 670, 718
CviQI GTAC 3 cut(s) 236, 275, 385
DdeI CTNAG 3 cut(s) 47, 97, 576
DpnI GATC 2 cut(s) 702, 725
DpnII GATC 2 cut(s) 700, 723
DraIII CACNNNGTG 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 105, 573
Eco81I CCTNAGG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 205, 391
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 114, 673, 721
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 110, 669, 717
FbaI TGATCA 1 cut(s) 723
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 6 cut(s) 150, 159, 172, 230, 478, 675
FokI GGATG 3 cut(s) 302, 371, 389
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 6 cut(s) 150, 159, 172, 230, 478, 675
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 121
GluI GCNGC 6 cut(s) 150, 159, 172, 230, 478, 675
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 2 cut(s) 333, 414
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 114, 673, 721
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 2 cut(s) 81, 201
HindII GTYRAC 2 cut(s) 81, 201
HinfI GANTC 3 cut(s) 255, 331, 403
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 81, 201
Hpy188I TCNGA 2 cut(s) 604, 705
Hpy188III TCNNGA 5 cut(s) 70, 164, 185, 502, 664
Hpy8I GTNNAC 2 cut(s) 81, 201
HpyAV CCTTC 2 cut(s) 161, 340
HpyCH4III ACNGT 2 cut(s) 128, 274
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 5 cut(s) 131, 440, 470, 682, 687
HpyF3I CTNAG 3 cut(s) 47, 97, 576
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 114, 673, 721
HspAI GCGC 1 cut(s) 120
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 723
Kzo9I GATC 2 cut(s) 700, 723
LmnI GCTCC 2 cut(s) 314, 581
Lsp1109I GCAGC 4 cut(s) 136, 145, 241, 686
LweI GCATC 4 cut(s) 280, 421, 593, 595
MabI ACCWGGT 1 cut(s) 205
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 702, 725
MboI GATC 2 cut(s) 700, 723
MboII GAAGA 4 cut(s) 107, 463, 579, 718
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 3 cut(s) 444, 640, 730
MlyI GAGTC 3 cut(s) 264, 340, 397
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 5 cut(s) 30, 211, 280, 525, 725
MroNI GCCGGC 1 cut(s) 33
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 3 cut(s) 232, 311, 560
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 207, 393
MvaI CCWGG 2 cut(s) 207, 393
MvnI CGCG 2 cut(s) 120, 665
NaeI GCCGGC 1 cut(s) 35
NdeII GATC 2 cut(s) 700, 723
NgoMIV GCCGGC 1 cut(s) 33
NlaIII CATG 3 cut(s) 114, 673, 721
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 665
NspI RCATGY 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 35
PkrI GCNGC 6 cut(s) 151, 160, 173, 231, 479, 676
PleI GAGTC 3 cut(s) 263, 339, 397
PpsI GAGTC 3 cut(s) 263, 339, 397
Psp124BI GAGCTC 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 205, 391
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 205, 391
PspN4I GGNNCC 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 232
PvuII CAGCTG 3 cut(s) 232, 311, 560
RruI TCGCGA 1 cut(s) 665
RsaI GTAC 3 cut(s) 237, 276, 386
RsaNI GTAC 3 cut(s) 236, 275, 385
RseI CAYNNNNRTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 14
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 6 cut(s) 150, 159, 172, 230, 478, 675
Sau3AI GATC 2 cut(s) 700, 723
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 3 cut(s) 264, 340, 397
ScrFI CCNGG 2 cut(s) 207, 393
SduI GDGCHC 1 cut(s) 14
SexAI ACCWGGT 1 cut(s) 205
SfaNI GCATC 4 cut(s) 280, 421, 593, 595
SfcI CTRYAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 185, 537
SmoI CTYRAG 2 cut(s) 185, 537
Sse9I AATT 3 cut(s) 444, 640, 730
SsiI CCGC 3 cut(s) 171, 293, 477
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 205, 391
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 128, 274
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 200
TasI AATT 3 cut(s) 444, 640, 730
TatI WGTACW 2 cut(s) 274, 384
TauI GCSGC 2 cut(s) 174, 480
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 3 cut(s) 133, 309, 689
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 4 cut(s) 149, 158, 229, 674
Tsp45I GTSAC 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 3 cut(s) 133, 309, 689
XapI RAATTY 1 cut(s) 640
XceI RCATGY 1 cut(s) 114
XmaJI CCTAGG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 200
XspI CTAG 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.