Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009429

Physical Location & Seq

Genomic Coordinates Reverse (-)

21320465 .. 21327583

Gene Structure 7119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCATCAACGCTTCCCCAGCTCTCTTCTCATCCAAATCCGACCATTCCTTGTGTTTTCGTCGGTCCGACCCCCACCCCAATTTCCCAAAATTCGACCGTTGCAGCTTTCCTCGACATTACCCTCCAAGACTGAGCAGCTACGCTACGAATGCTTCATTACTAAGACCCAAAGCCTCTCAGAATACAAGAAAGCCCATGCTTCCTCCTTACAATGTGCTCATCACCGGTTCAACCAAAGGTATTGGTTTTGCTCTGGCCAAAGAGTTCCTCAGATCAGGAGATAACGTCGTGATTTGCTCTAGATCAGCTGAACGAGTTGAATCTGCTGTTCAGAGCCTTAGAGAAGATTTTGGCGAGCAGCGTGTGTGGGGTACTAAATGTGATGTTAGGGAAGGGAAAGATGTGAAGGACTTAGTGGCCTTTGCACAAAAGAACCTGAAATACATTGATATATGGATTAATAATGCAGGATCAAATGCTTATAGTTATAAACCCCTGGCAGAGGCTTCAGATGAAGATCTTATTGAAGTTGTCACCACAAATACACTTGGTTTGATGATATGTTGTCGTGAGGCAATAAAGATGATGTTGGACCAGCCTCGAGGTGGTCATGTTTTCAACATCGATGGAGCTGGTTCTGATGGAAGACCAACCCCAAGGTTTGCTGCATATGGAGCAACAAAGCGTAGTGTGGTGCATTTGACAAAATCATTACAGGCAGAATTACAGATGCAAGATGTCAAGCAAGTCATAGTGCATAACTTGTCGCCAGGGATGGTTACAACTGATCTTCTCATGTCTGGTGCAACTACAAAGCAGGCAAAGTTTTTCATCAATGTTCTGGCAGAACCAGCTGAAGTGGTTGCCGAGTATCTTGTTCCAAATATAAGATCCATCCCTACCAAGGGATCAATGAAGCCCACTTACATCCGTTTCCTAACAGGGATGAAAGCCTACTCCCAGATATTCTCAAGACTTGCTTTTGGTGCAAGAAGGAACAGATATTTGCTCGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0010304 GO:0015994 GO:0015996 GO:0016491 GO:0016614 GO:0016616 GO:0019439 GO:0019538 GO:0030163 GO:0033013 GO:0033015 GO:0034256 GO:0034641 GO:0042440 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Myb_DNA-binding adh_short

Protein Analysis

340

Amino Acids

37.81

Weight (kDa)

9.48

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	72 - 270	1.2e-08	SDR-like rossmann domain
adh_short	PF00106	73 - 268	6.5e-43	short chain dehydrogenase
KR	PF08659	73 - 181	4.5e-07	KR domain
adh_short_C2	PF13561	79 - 271	4.9e-31	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04900
fragaria_vesca	FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100
malus_domestica	MD02G1262200.v1.1
prunus_persica	Prupe.2G064200_v2.0.a1 Prupe.2G064200_v2.0.a1
pyrus_communis	pycom02g22420
rosa_chinensis	RchiOBHm_Chr1g0331471
rosa_laevigata	RLG00000029735
rosa_multiflora	Rmu_sc0001567.1_g000007 Rmu_sc0003791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00319100
rosa_rugosa	Rorug01G0093100
rosa_samantha	Rh1AG118400 Rh1BG089100 Rh1CG113200 Rh1DG122400
rosa_wichuraiana	Rw1G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AbsI	CCTCGAGG	1 cut(s)	603
AclWI	GGATC	3 cut(s)	481, 888, 919
AcoI	YGGCCR	2 cut(s)	3, 258
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	2 cut(s)	495, 879
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	4 cut(s)	505, 608, 907, 908
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	234, 323, 530, 622
AjnI	CCWGG	2 cut(s)	498, 772
AluBI	AGCT	6 cut(s)	23, 108, 141, 311, 635, 857
AluI	AGCT	6 cut(s)	23, 108, 141, 311, 635, 857
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	3 cut(s)	481, 888, 919
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	3 cut(s)	3, 258, 420
ApeKI	GCWGC	4 cut(s)	105, 138, 361, 668
ApoI	RAATTY	1 cut(s)	92
AseI	ATTAAT	1 cut(s)	462
AsiGI	ACCGGT	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	66, 595
AsuHPI	GGTGA	2 cut(s)	217, 529
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	2 cut(s)	66, 595
BalI	TGGCCA	2 cut(s)	5, 260
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
BbsI	GAAGAC	1 cut(s)	655
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	117, 150, 373, 655
BccI	CCATC	5 cut(s)	14, 623, 638, 772, 905
BciT130I	CCWGG	2 cut(s)	500, 774
BfaI	CTAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	4 cut(s)	106, 139, 362, 669
BlsI	GCNGC	4 cut(s)	107, 140, 363, 670
Bme1390I	CCNGG	2 cut(s)	500, 774
Bme18I	GGWCC	2 cut(s)	66, 595
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	66, 595
BmrFI	CCNGG	2 cut(s)	500, 774
BmsI	GCATC	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	655
BpuEI	CTTGAG	1 cut(s)	958
Bsa29I	ATCGAT	1 cut(s)	627
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	498, 659, 773, 906
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	4 cut(s)	505, 608, 907, 908
Bse118I	RCCGGY	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	500, 774
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	4 cut(s)	498, 659, 773, 906
BseGI	GGATG	5 cut(s)	32, 783, 897, 930, 954
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	4 cut(s)	505, 608, 907, 908
BseMII	CTCAG	3 cut(s)	125, 194, 286
BseXI	GCAGC	4 cut(s)	117, 150, 373, 655
BseYI	CCCAGC	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	5, 260, 422
BshTI	ACCGGT	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	4 cut(s)	505, 608, 907, 908
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	5, 260, 422
BsoBI	CYCGRG	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
BspANI	GGCC	3 cut(s)	5, 260, 422
BspCNI	CTCAG	3 cut(s)	126, 193, 285
BspDI	ATCGAT	1 cut(s)	627
BspPI	GGATC	3 cut(s)	481, 888, 919
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	4 cut(s)	498, 659, 773, 906
BssMI	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
BssT1I	CCWWGG	2 cut(s)	659, 906
Bst2UI	CCWGG	2 cut(s)	500, 774
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	359, 822
BstDEI	CTNAG	6 cut(s)	134, 164, 180, 272, 341, 415
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	5 cut(s)	32, 783, 897, 930, 954
BstKTI	GATC	7 cut(s)	278, 308, 476, 523, 793, 896, 914
BstMBI	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 152, 677, 854, 989
BstNI	CCWGG	2 cut(s)	500, 774
BstSCI	CCNGG	2 cut(s)	498, 772
BstV1I	GCAGC	4 cut(s)	117, 150, 373, 655
BstV2I	GAAGAC	1 cut(s)	655
BstX2I	RGATCY	2 cut(s)	520, 893
BstYI	RGATCY	2 cut(s)	520, 893
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	5, 260, 422
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	32, 783, 897, 930, 954
Cac8I	GCNNGC	2 cut(s)	359, 822
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	66, 595
ClaI	ATCGAT	1 cut(s)	627
CpoI	CGGWCCG	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	375
CspAI	ACCGGT	1 cut(s)	227
CspI	CGGWCCG	1 cut(s)	66
CviAII	CATG	3 cut(s)	199, 614, 799
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	6 cut(s)	134, 164, 180, 272, 341, 415
DpnI	GATC	7 cut(s)	277, 307, 475, 522, 792, 895, 913
DpnII	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
EaeI	YGGCCR	2 cut(s)	3, 258
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	659, 906
Eco47I	GGWCC	2 cut(s)	66, 595
Eco57I	CTGAAG	2 cut(s)	495, 879
Eco88I	CYCGRG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	498, 772
EcoT14I	CCWWGG	2 cut(s)	659, 906
ErhI	CCWWGG	2 cut(s)	659, 906
FaeI	CATG	3 cut(s)	202, 617, 802
FalI	AAGNNNNNCTT	2 cut(s)	967, 999
FatI	CATG	3 cut(s)	198, 613, 798
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	106, 139, 362, 669
FokI	GGATG	5 cut(s)	19, 790, 884, 917, 961
Fsp4HI	GCNGC	4 cut(s)	106, 139, 362, 669
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	4 cut(s)	106, 139, 362, 669
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	5, 260, 422
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	3 cut(s)	202, 617, 802
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	217, 529
Hpy188I	TCNGA	7 cut(s)	43, 70, 183, 275, 336, 514, 643
Hpy188III	TCNNGA	5 cut(s)	279, 292, 303, 572, 975
Hpy99I	CGWCG	2 cut(s)	66, 293
HpyAV	CCTTC	3 cut(s)	389, 403, 990
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	9 cut(s)	105, 428, 470, 671, 700, 736, 760, 809, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 152, 677, 854, 989
HpyF3I	CTNAG	6 cut(s)	134, 164, 180, 272, 341, 415
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	202, 617, 802
Kzo9I	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
LmnI	GCTCC	2 cut(s)	632, 677
Lsp1109I	GCAGC	4 cut(s)	117, 150, 373, 655
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	535, 781
MalI	GATC	7 cut(s)	277, 307, 475, 522, 792, 895, 913
MboI	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
MboII	GAAGA	5 cut(s)	19, 359, 530, 660, 785
MflI	RGATCY	2 cut(s)	520, 893
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	2 cut(s)	5, 260
MluCI	AATT	3 cut(s)	82, 92, 725
MluNI	TGGCCA	2 cut(s)	5, 260
MmeI	TCCRAC	3 cut(s)	66, 93, 573
MnlI	CCTC	9 cut(s)	123, 135, 187, 216, 281, 499, 568, 599, 612
Mox20I	TGGCCA	2 cut(s)	5, 260
MscI	TGGCCA	2 cut(s)	5, 260
MseI	TTAA	2 cut(s)	462, 1021
Msp20I	TGGCCA	2 cut(s)	5, 260
MspA1I	CMGCKG	2 cut(s)	311, 857
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	500, 774
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	2 cut(s)	500, 774
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 152, 677, 854, 989
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
NlaIII	CATG	3 cut(s)	202, 617, 802
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	603
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	323
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	107, 140, 363, 670
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	498, 772
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	2 cut(s)	498, 772
PspPI	GGNCC	2 cut(s)	66, 595
PspXI	VCTCGAGB	1 cut(s)	603
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PsuI	RGATCY	2 cut(s)	520, 893
PvuII	CAGCTG	2 cut(s)	311, 857
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
Rsr2I	CGGWCCG	1 cut(s)	66
RsrII	CGGWCCG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	462, 1021
SatI	GCNGC	4 cut(s)	106, 139, 362, 669
Sau3AI	GATC	7 cut(s)	275, 305, 473, 520, 790, 893, 911
Sau96I	GGNCC	2 cut(s)	66, 595
ScrFI	CCNGG	2 cut(s)	500, 774
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	603
SinI	GGWCC	2 cut(s)	66, 595
SlaI	CTCGAG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	603, 973
SmoI	CTYRAG	2 cut(s)	603, 973
Sse9I	AATT	3 cut(s)	82, 92, 725
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	498, 772
StyI	CCWWGG	2 cut(s)	659, 906
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	5 cut(s)	96, 115, 604, 627, 1014
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	82, 92, 725
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	462, 1021
Tru9I	TTAA	2 cut(s)	462, 1021
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	4 cut(s)	105, 138, 361, 668
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	5 cut(s)	147, 531, 823, 932, 965
TspGWI	ACGGA	1 cut(s)	923
VpaK11BI	GGWCC	2 cut(s)	66, 595
VspI	ATTAAT	1 cut(s)	462
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XhoI	CTCGAG	1 cut(s)	603
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.