Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006805

Physical Location & Seq

Genomic Coordinates Forward (+)

23443713 .. 23444312

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAAGAAGCCTCAAGGGGGGCTTACAAGATCTCCTCTTACATGATTGCCAACACCATTGTCTTCCTACCCTTTTTATTTGCAGTGGCTCTTCTGTTTGCTGTTCCTGTGTATTGGCTTGTAGGCCTCTATCCTTCTGTGGCTGCTTTCGCATTTTTCACTTTCGTGGTTTGGCTCATTGTGTTGATGGCTAGTTCTCTAGTGCTCTTTCTCAGTGCAGTCTCACCCGATTTCATTTCAGGAAACTCGCTTATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCTGGCTACTTCATTCCGAAAGAGAGCATACCAAAATACTGGCTCTTCATGTACTATGTTTCCATTTACAGGTATCCGTTGGACACATTGCTGACAAACGAGTATTGCAGTATTAGTAGCGAGTGTTTCTCTTGGCATGCTAATGATCAATTTCCCTCCGAGTGTTTGCTCACTGGCAATGATGTGCTGAAGAGTCGGGGACTTGACAAGGACACCAGGTGGATCAATGTAGGGATCATGTTTGGTTTCTTTGTGTTTTATCGAGTGCTCTGTTGGATCATTCTTTGTCGAAGGGCTTCGAAAACAACAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

199

Amino Acids

22.77

Weight (kDa)

8.5

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	2 - 130	1.7e-30	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19410 AT5G19410
fragaria_vesca	FvH4_5g29200
malus_domestica	MD11G1185400.v1.1
prunus_persica	Prupe.4G266200_v2.0.a1
pyrus_communis	pycom12g08770
rosa_chinensis	RchiOBHm_Chr1g0332261 RchiOBHm_Chr1g0332281 RchiOBHm_Chr7g0221951
rosa_laevigata	RLG00000002108 RLG00000029681
rosa_multiflora	Rmu_sc0000834.1_g000025 Rmu_sc0003422.1_g000001 Rmu_sc0004325.1_g000028
rosa_roxburghii	Rroxscaffold_3G00237570
rosa_rugosa	Rorug01G0099800 Rorug07G0204400
rosa_samantha	Rh1AG123500 Rh1AG123600 Rh1DG128800 Rh7AG345200 Rh7BG335700 Rh7CG362600 Rh7DG342700
rosa_wichuraiana	Rw1G010060 Rw7G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	515, 527, 569
AcuI	CTGAAG	1 cut(s)	494
AdeI	CACNNNGTG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	18, 354
AjnI	CCWGG	1 cut(s)	500
AleI	CACNNNNGTG	1 cut(s)	164
Alw21I	GWGCWC	2 cut(s)	207, 555
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	3 cut(s)	515, 527, 569
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	207, 555
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	502
BciVI	GTATCC	1 cut(s)	369
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	192, 200
BfuI	GTATCC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
Bpu14I	TTCGAA	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 354
Bse1I	ACTGG	2 cut(s)	329, 463
Bse3DI	GCAATG	2 cut(s)	371, 469
BseBI	CCWGG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	18, 354
BseMI	GCAATG	2 cut(s)	371, 469
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	329, 463
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	2 cut(s)	237, 241
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	207, 555
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	18, 354
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	207, 555
Bsp143I	GATC	5 cut(s)	30, 430, 507, 519, 561
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	3 cut(s)	515, 527, 569
BspQI	GCTCTTC	2 cut(s)	96, 335
BspT104I	TTCGAA	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	371, 469
BsrI	ACTGG	2 cut(s)	329, 463
BssMI	GATC	5 cut(s)	30, 430, 507, 519, 561
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	4 cut(s)	96, 287, 335, 470
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	212
BstKTI	GATC	5 cut(s)	33, 433, 510, 522, 564
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	5 cut(s)	30, 430, 507, 519, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 220, 456
Cac8I	GCNNGC	1 cut(s)	423
CsiI	ACCWGGT	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	4 cut(s)	43, 334, 422, 523
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	5 cut(s)	32, 432, 509, 521, 563
DpnII	GATC	5 cut(s)	30, 430, 507, 519, 561
DraIII	CACNNNGTG	1 cut(s)	504
Eam1104I	CTCTTC	4 cut(s)	96, 287, 335, 470
EarI	CTCTTC	4 cut(s)	96, 287, 335, 470
Eco147I	AGGCCT	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	500
FaeI	CATG	4 cut(s)	46, 337, 425, 526
FaiI	YATR	6 cut(s)	44, 314, 335, 342, 423, 524
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	4 cut(s)	42, 333, 421, 522
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	192, 200
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	46, 337, 425, 526
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	303, 445
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	144, 283, 570
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	83, 218, 258, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	46, 337, 425, 526
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	30, 430, 507, 519, 561
LguI	GCTCTTC	2 cut(s)	96, 335
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	8 cut(s)	120, 225, 273, 310, 340, 444, 487, 514
Lsp1109I	GCAGC	1 cut(s)	130
MabI	ACCWGGT	1 cut(s)	500
MaeI	CTAG	2 cut(s)	192, 200
MalI	GATC	5 cut(s)	32, 432, 509, 521, 563
MboI	GATC	5 cut(s)	30, 430, 507, 519, 561
MboII	GAAGA	6 cut(s)	55, 83, 268, 274, 322, 487
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	207, 555
MluCI	AATT	2 cut(s)	434, 594
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	2 cut(s)	345, 539
MnlI	CCTC	5 cut(s)	22, 46, 137, 290, 451
MroXI	GAANNNNTTC	1 cut(s)	580
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	2 cut(s)	164, 426
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	5 cut(s)	30, 430, 507, 519, 561
NlaIII	CATG	4 cut(s)	46, 337, 425, 526
NlaIV	GGNNCC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	584
OliI	CACNNNNGTG	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	2 cut(s)	96, 335
PdmI	GAANNNNTTC	1 cut(s)	580
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	164, 426
SapI	GCTCTTC	2 cut(s)	96, 335
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	5 cut(s)	30, 430, 507, 519, 561
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	2 cut(s)	207, 555
SetI	ASST	2 cut(s)	359, 506
SexAI	ACCWGGT	1 cut(s)	500
SfuI	TTCGAA	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	164, 426
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	2 cut(s)	434, 594
SseBI	AGGCCT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	192, 200
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	3 cut(s)	547, 574, 584
TasI	AATT	2 cut(s)	434, 594
TatI	WGTACW	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TscAI	CASTG	3 cut(s)	90, 220, 463
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	17, 223, 286, 322
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	90, 220, 463
XceI	RCATGY	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	580
XspI	CTAG	2 cut(s)	192, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.