Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006805

Physical Location & Seq

Genomic Coordinates Reverse (-)

25253854 .. 25255275

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCAGCACCTTGCTTTGAAGAACCAAACATGAATGGAGATGACTCGGTGATTCTTTTTTCTACCTCAGACTCCCCTGAACAATATACCACCACCCCTTCCTCTTCTTCCTACCACTCATCACCACCATCACCCCAACATTGCATTAACCCAACTTACAATCTCACTGTACATAACCTCTCCTACACTTATCTCCCAAATAGGGGCATACCACTTTCAGTTTCTCAACTGCTGCAAAAGCCTAAGCCTGTTGCCATACTCAAGTCAGTCTCTTTTGTTGCAAAAAGTTGTGAAATACTTGCCATTGTTGGCCCTAGTGGCACTGGAAAATCTACCCTCCTGCGAATAATATCGGGGAGGGTGAAAGATGAAGACTACAATCCCAAAAGTGTCTCCATTAACGATCATCAGATAACTAGTCCTGCTCAGTTGCGCAAAATATGCGGATTTGTTGCACAAGAAGATAATCTGCTTCCCCTACTGACTGTGAAGGAGACTTTGATGTTCACTGCTAAGTTTCGACTTAAAGGCATTGCTGCAAAAGAGAGGGAAGAGAGGGTGGAGAGCTTAATGCAAGAGCTTGGTCTTCTCCATGTCTCCGATAGCTATGTGGGAGATGAAGAGAATAGAGGGATATCTGGTGGAGAAAGGAAAAGGGTATCTATAGGTGTCGATATGATTCATGATCCACCTATTTTGCTTCTTGATGAGCCGACTTCAGGCCTAGACAGCACTTCGGCTCTTCAAGTTATAGAGCTTCTTTCTATAATGGCCAAATCAAAGCAAAGAACCGTGGTTTTATCAATACACCAACCAAGCTATAGAATTCTTCATCACATCTCCAACTTTCTGATCCTCTCTCATGGTTCTGTTGTCCATAATGGGAGCATTGAATTACTCGAAGAAACTATAGGTAATCTTGGAATGCAAATTCCATTGCAGCTCAATGCCCTAGAATTTGCCATGGAAGTTATAAAAACCCTGGAAGATTCATATTCCAGAAGCACTAGTGATCATCACCCTCATGCTACAGAAAACAAAGAACCATGCTCCTACCCTTCATTGCCAGAAATAGAAATCGGCAGAGATCAACATGATCAAACCAAAAACATTGGTGATTATTTCTCTAATTTATATGAGATCATGTTTCTCTGCTCAAGATTTTGGAAGATAATTTACAGAACGAAGCAGCTGCTTCTGGCCAGAACACTGCAAGCTCTTGTTGGAGGTTTTGGCTTGGCAAGCGTGTACATGAAAATGAGGAAAGATGAAGAAGGCGTAGCAGAGCGACTAGGCCTCTTTGCTTTCAGTCTAAGTTTTCTACTCTCTTCCACAGTTGAAGCATTACCGATATTCCTTCAAGAGCGGCGAGTTTTAATGAAAGAAGCCTCAAGGGGGCTTACAAGATCTCCTCTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

473

Amino Acids

52.6

Weight (kDa)

6.12

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	87 - 240	8.5e-29	ABC transporter
ABC2_membrane	PF01061	380 - 470	5e-12	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19410 AT5G19410
fragaria_vesca	FvH4_5g29200
malus_domestica	MD11G1185400.v1.1
prunus_persica	Prupe.4G266200_v2.0.a1
pyrus_communis	pycom12g08770
rosa_chinensis	RchiOBHm_Chr1g0332261 RchiOBHm_Chr1g0332281 RchiOBHm_Chr7g0221951
rosa_laevigata	RLG00000002108 RLG00000029681
rosa_multiflora	Rmu_sc0000834.1_g000025 Rmu_sc0003422.1_g000001 Rmu_sc0004325.1_g000028
rosa_roxburghii	Rroxscaffold_3G00237570
rosa_rugosa	Rorug01G0099800 Rorug07G0204400
rosa_samantha	Rh1AG123500 Rh1AG123600 Rh1DG128800 Rh7AG345200 Rh7BG335700 Rh7CG362600 Rh7DG342700
rosa_wichuraiana	Rw1G010060 Rw7G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	974
Acc16I	TGCGCA	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	1366
AciI	CCGC	2 cut(s)	444, 1366
AclWI	GGATC	2 cut(s)	680, 847
AcoI	YGGCCR	2 cut(s)	771, 1200
AcsI	RAATTY	3 cut(s)	825, 930, 956
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	2 cut(s)	171, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	202, 203, 719, 1395
AgsI	TTSAA	5 cut(s)	20, 746, 893, 1340, 1361
AhlI	ACTAGT	2 cut(s)	416, 1007
AjnI	CCWGG	1 cut(s)	981
AluBI	AGCT	8 cut(s)	567, 580, 606, 757, 819, 943, 1192, 1217
AluI	AGCT	8 cut(s)	567, 580, 606, 757, 819, 943, 1192, 1217
Alw26I	GTCTC	4 cut(s)	274, 397, 488, 601
AlwI	GGATC	2 cut(s)	680, 847
AoxI	GGCC	5 cut(s)	310, 721, 771, 1200, 1294
ApeKI	GCWGC	6 cut(s)	5, 232, 536, 940, 1189, 1192
ApoI	RAATTY	3 cut(s)	825, 930, 956
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	6 cut(s)	61, 114, 123, 373, 1010, 1127
BalI	TGGCCA	2 cut(s)	773, 1202
BarI	GAAGNNNNNNTAC	2 cut(s)	1160, 1192
BbsI	GAAGAC	2 cut(s)	378, 578
BbvI	GCAGC	6 cut(s)	17, 219, 523, 952, 1179, 1201
BccI	CCATC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	1174, 1208
BciT130I	CCWGG	1 cut(s)	983
BclI	TGATCA	2 cut(s)	1012, 1096
BcoDI	GTCTC	4 cut(s)	274, 397, 488, 601
BcuI	ACTAGT	2 cut(s)	416, 1007
BfaI	CTAG	6 cut(s)	315, 417, 725, 953, 1008, 1292
BfmI	CTRYAG	4 cut(s)	663, 820, 909, 1029
BglI	GCCNNNNNGGC	1 cut(s)	318
BglII	AGATCT	1 cut(s)	1406
BisI	GCNGC	7 cut(s)	6, 233, 537, 941, 1190, 1193, 1367
BlsI	GCNGC	7 cut(s)	7, 234, 538, 942, 1191, 1194, 1368
Bme1390I	CCNGG	1 cut(s)	983
BmgT120I	GGNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	983
BpiI	GAAGAC	2 cut(s)	378, 578
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	3 cut(s)	245, 1141, 1375
BsaJI	CCNNGG	3 cut(s)	792, 963, 981
BsaXI	ACNNNNNCTCC	1 cut(s)	1393
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 203, 719, 1395
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	4 cut(s)	139, 531, 935, 1061
BseBI	CCWGG	1 cut(s)	983
BseDI	CCNNGG	3 cut(s)	792, 963, 981
BseLI	CCNNNNNNNGG	4 cut(s)	202, 203, 719, 1395
BseMI	GCAATG	4 cut(s)	139, 531, 935, 1061
BseMII	CTCAG	2 cut(s)	81, 440
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	1401
BseXI	GCAGC	6 cut(s)	17, 219, 523, 952, 1179, 1201
BshFI	GGCC	5 cut(s)	312, 723, 773, 1202, 1296
BslI	CCNNNNNNNGG	4 cut(s)	202, 203, 719, 1395
BsmAI	GTCTC	4 cut(s)	274, 397, 488, 601
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	5 cut(s)	312, 723, 773, 1202, 1296
Bsp1407I	TGTACA	2 cut(s)	169, 1248
Bsp143I	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	2 cut(s)	444, 1366
BspANI	GGCC	5 cut(s)	312, 723, 773, 1202, 1296
BspCNI	CTCAG	2 cut(s)	80, 439
BspHI	TCATGA	1 cut(s)	682
BspPI	GGATC	2 cut(s)	680, 847
BspQI	GCTCTTC	1 cut(s)	747
BsrBI	CCGCTC	1 cut(s)	1366
BsrDI	GCAATG	4 cut(s)	139, 531, 935, 1061
BsrGI	TGTACA	2 cut(s)	169, 1248
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	792, 963, 981
BssMI	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
BssT1I	CCWWGG	1 cut(s)	963
Bst2UI	CCWGG	1 cut(s)	983
Bst4CI	ACNGT	4 cut(s)	169, 487, 793, 1336
Bst6I	CTCTTC	5 cut(s)	109, 546, 615, 747, 1333
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstAUI	TGTACA	2 cut(s)	169, 1248
BstC8I	GCNNGC	2 cut(s)	1215, 1243
BstDEI	CTNAG	5 cut(s)	67, 243, 426, 513, 1313
BstDSI	CCRYGG	2 cut(s)	792, 963
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	8 cut(s)	406, 688, 855, 1015, 1090, 1099, 1143, 1409
BstMAI	GTCTC	4 cut(s)	274, 397, 488, 601
BstMBI	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 318, 441, 729, 1242
BstNI	CCWGG	1 cut(s)	983
BstSCI	CCNGG	1 cut(s)	981
BstSFI	CTRYAG	4 cut(s)	663, 820, 909, 1029
BstV1I	GCAGC	6 cut(s)	17, 219, 523, 952, 1179, 1201
BstV2I	GAAGAC	2 cut(s)	378, 578
BstX2I	RGATCY	1 cut(s)	1406
BstYI	RGATCY	1 cut(s)	1406
BsuRI	GGCC	5 cut(s)	312, 723, 773, 1202, 1296
BtgI	CCRYGG	2 cut(s)	792, 963
BtsI	GCAGTG	2 cut(s)	507, 1208
BtsIMutI	CAGTG	4 cut(s)	165, 321, 507, 1208
Cac8I	GCNNGC	2 cut(s)	1215, 1243
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	170, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	678, 713
CviQI	GTAC	2 cut(s)	170, 1249
DdeI	CTNAG	5 cut(s)	67, 243, 426, 513, 1313
DpnI	GATC	8 cut(s)	405, 687, 854, 1014, 1089, 1098, 1142, 1408
DpnII	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
EaeI	YGGCCR	2 cut(s)	771, 1200
Eam1104I	CTCTTC	5 cut(s)	109, 546, 615, 747, 1333
EarI	CTCTTC	5 cut(s)	109, 546, 615, 747, 1333
Eco130I	CCWWGG	1 cut(s)	963
Eco147I	AGGCCT	2 cut(s)	723, 1296
Eco32I	GATATC	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	981
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	963
ErhI	CCWWGG	1 cut(s)	963
FbaI	TGATCA	2 cut(s)	1012, 1096
Fnu4HI	GCNGC	7 cut(s)	6, 233, 537, 941, 1190, 1193, 1367
Fsp4HI	GCNGC	7 cut(s)	6, 233, 537, 941, 1190, 1193, 1367
FspBI	CTAG	6 cut(s)	315, 417, 725, 953, 1008, 1292
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	7 cut(s)	6, 233, 537, 941, 1190, 1193, 1367
HaeIII	GGCC	5 cut(s)	312, 723, 773, 1202, 1296
HhaI	GCGC	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	5 cut(s)	44, 52, 71, 679, 989
HphI	GGTGA	6 cut(s)	61, 114, 123, 373, 1010, 1127
Hpy166II	GTNNAC	2 cut(s)	507, 1249
Hpy188I	TCNGA	4 cut(s)	70, 411, 601, 852
Hpy188III	TCNNGA	5 cut(s)	683, 704, 999, 1158, 1361
Hpy8I	GTNNAC	2 cut(s)	507, 1249
HpyAV	CCTTC	5 cut(s)	108, 484, 1068, 1268, 1367
HpyCH4III	ACNGT	4 cut(s)	169, 487, 793, 1336
HpyCH4V	TGCA	9 cut(s)	144, 235, 281, 455, 539, 574, 928, 940, 1213
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 318, 441, 729, 1242
HpyF3I	CTNAG	5 cut(s)	67, 243, 426, 513, 1313
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	2 cut(s)	1012, 1096
Kzo9I	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
LguI	GCTCTTC	1 cut(s)	747
LmnI	GCTCC	2 cut(s)	885, 1055
Lsp1109I	GCAGC	6 cut(s)	17, 219, 523, 952, 1179, 1201
MaeI	CTAG	6 cut(s)	315, 417, 725, 953, 1008, 1292
MalI	GATC	8 cut(s)	405, 687, 854, 1014, 1089, 1098, 1142, 1408
MbiI	CCGCTC	1 cut(s)	1366
MboI	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
MflI	RGATCY	1 cut(s)	1406
MlsI	TGGCCA	2 cut(s)	773, 1202
MluCI	AATT	6 cut(s)	825, 893, 930, 956, 1129, 1173
MluNI	TGGCCA	2 cut(s)	773, 1202
MlyI	GAGTC	2 cut(s)	38, 65
MmeI	TCCRAC	2 cut(s)	867, 1204
Mox20I	TGGCCA	2 cut(s)	773, 1202
MscI	TGGCCA	2 cut(s)	773, 1202
MseI	TTAA	5 cut(s)	147, 399, 525, 569, 1376
MslI	CAYNNNNRTG	2 cut(s)	1023, 1256
Msp20I	TGGCCA	2 cut(s)	773, 1202
MspA1I	CMGCKG	1 cut(s)	1192
MspR9I	CCNGG	1 cut(s)	983
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	1 cut(s)	983
MwoI	GCNNNNNNNGC	5 cut(s)	238, 318, 441, 729, 1242
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
NsbI	TGCGCA	1 cut(s)	434
PagI	TCATGA	1 cut(s)	682
PceI	AGGCCT	2 cut(s)	723, 1296
PciSI	GCTCTTC	1 cut(s)	747
PctI	GAATGC	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	52, 679, 989
PkrI	GCNGC	7 cut(s)	7, 234, 538, 942, 1191, 1194, 1368
PleI	GAGTC	2 cut(s)	38, 65
PpsI	GAGTC	2 cut(s)	38, 65
PsiI	TTATAA	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	981
PspGI	CCWGG	1 cut(s)	981
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	1406
PvuII	CAGCTG	1 cut(s)	1192
RsaI	GTAC	2 cut(s)	171, 1250
RsaNI	GTAC	2 cut(s)	170, 1249
RseI	CAYNNNNRTG	2 cut(s)	1023, 1256
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	5 cut(s)	147, 399, 525, 569, 1376
SatI	GCNGC	7 cut(s)	6, 233, 537, 941, 1190, 1193, 1367
Sau3AI	GATC	8 cut(s)	403, 685, 852, 1012, 1087, 1096, 1140, 1406
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	38, 65
ScrFI	CCNGG	1 cut(s)	983
SfcI	CTRYAG	4 cut(s)	663, 820, 909, 1029
SmiMI	CAYNNNNRTG	2 cut(s)	1023, 1256
SmlI	CTYRAG	3 cut(s)	260, 1156, 1390
SmoI	CTYRAG	3 cut(s)	260, 1156, 1390
SpeI	ACTAGT	2 cut(s)	416, 1007
Sse9I	AATT	6 cut(s)	825, 893, 930, 956, 1129, 1173
SseBI	AGGCCT	2 cut(s)	723, 1296
SsiI	CCGC	2 cut(s)	444, 1366
SspMI	CTAG	6 cut(s)	315, 417, 725, 953, 1008, 1292
StuI	AGGCCT	2 cut(s)	723, 1296
StyD4I	CCNGG	1 cut(s)	981
StyI	CCWWGG	1 cut(s)	963
TaaI	ACNGT	4 cut(s)	169, 487, 793, 1336
TaqI	TCGA	3 cut(s)	520, 672, 900
TasI	AATT	6 cut(s)	825, 893, 930, 956, 1129, 1173
TatI	WGTACW	2 cut(s)	169, 1248
TauI	GCSGC	1 cut(s)	1369
TfiI	GAWTC	3 cut(s)	52, 679, 989
Tru1I	TTAA	5 cut(s)	147, 399, 525, 569, 1376
Tru9I	TTAA	5 cut(s)	147, 399, 525, 569, 1376
TscAI	CASTG	4 cut(s)	172, 328, 514, 1215
TseI	GCWGC	6 cut(s)	5, 232, 536, 940, 1189, 1192
TspRI	CASTG	4 cut(s)	172, 328, 514, 1215
XapI	RAATTY	3 cut(s)	825, 930, 956
XspI	CTAG	6 cut(s)	315, 417, 725, 953, 1008, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.