Rh1AG123600

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006805
Physical Location & Seq
Forward (+)
23091381 .. 23092631
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG123600.1

Sequence Viewer

Length: 1053 bp
ATGCAAATTCCATTGCAGCTCAATGCCCTAGAATCTGCCATGGAAGTTATAAAAACCCTGGAAGATTCATATTCCAGAAGCACTAGTGATCATCACCCTCATGCTACAGAAAACAAAGAACCATGCTCTTACCCTTCATTGCCACAAATAGAAATCGGCAGAGATCAACATGATCAAACCAAAAACATGGGTGATTATTTCTCTAATTTATATGAGATCATGTTTCTCTGCTCAAGATTTTGGAAGATAATTTACAGAACGAAGCAGCTGCTTCTGGCCAGAACACTGCAAGCTCTTGTTGGAGGTTTTGGCTTGGCAAGCGTGTACATAAAAATGAGGAAAGATGAAGAAGGCGTAGCAGAGCGACTAGGCCTCTTTGCTTTCAGTCTAAGTTTTCTACTCTCTTCCACAGTTGAAGCATTACCGATATTCCTTCAAGAGCGGCGAGTTTTAATGAAAGAAGCCTCAAGGGGGGCTTACAAGATCTCCTCTTACATGATTGCCAACACCATTGTCTTCCTACCCTTTTTATTTGCAGTGGCTCTTCTGTTTGCTGTTCCTGTGTATTGGCTTGTAGGCCTCAATCCTTCTGTGGCTGCTTTTGCATTTTTCACTTTCGTGGTTTGGCTCATTGTGTTGATGGCTAGTTCTCTAGTGCTCTTTCTCAGTGCAGTCTCTCCCGATTTCATTTCAGGAAACTCGCTTATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCTGGCTACTTCATTCCGAAAGAGAGCATACCAAAATACTGGCTCTTCATGTACTATGTTTCCATTTACAGGTATCCGTTGGACACATTGCTGACAAACGAGTATTGGAGTATTAGTAGCGAGTGTTTCTCTTGGCATGCTAATGATCAATTTCCCTCCGAGTGTTTGCTCACTGGCAATGATGTGCTGAAGAGTCGGGGACTTGACAAGGACACCAGGTGGATCAATGTAGGGATCATGTTTGGTTTCTTTGTGTTTAATCGAGTGCTCTGTTGGATCATTCTTTGTCGAAGGGCTTCGAAAACAACAATTTAA

Protein Analysis

350

Amino Acids

40.07

Weight (kDa)

7.56

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 72 - 281 1.6e-48 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 442
AciI CCGC 1 cut(s) 442
AclWI GGATC 3 cut(s) 968, 980, 1022
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 947
AdeI CACNNNGTG 1 cut(s) 957
AfaI GTAC 2 cut(s) 326, 791
AfiI CCNNNNNNNGG 2 cut(s) 471, 807
AgsI TTSAA 2 cut(s) 416, 437
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 57, 953
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 3 cut(s) 19, 268, 293
AluI AGCT 3 cut(s) 19, 268, 293
Alw21I GWGCWC 2 cut(s) 660, 1008
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 3 cut(s) 968, 980, 1022
AoxI GGCC 3 cut(s) 276, 370, 577
ApeKI GCWGC 4 cut(s) 16, 265, 268, 596
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 1033
AsuHPI GGTGA 2 cut(s) 86, 203
AsuII TTCGAA 1 cut(s) 1037
BalI TGGCCA 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbsI GAAGAC 1 cut(s) 508
Bbv12I GWGCWC 2 cut(s) 660, 1008
BbvI GCAGC 4 cut(s) 28, 255, 277, 583
BccI CCATC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 2 cut(s) 59, 955
BciVI GTATCC 1 cut(s) 822
BclI TGATCA 3 cut(s) 88, 172, 883
BcoDI GTCTC 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 5 cut(s) 29, 84, 368, 645, 653
BfmI CTRYAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 822
BglII AGATCT 1 cut(s) 483
BisI GCNGC 5 cut(s) 17, 266, 269, 443, 597
BlsI GCNGC 5 cut(s) 18, 267, 270, 444, 598
Bme1390I CCNGG 2 cut(s) 59, 955
BmiI GGNNCC 1 cut(s) 724
BmrFI CCNGG 2 cut(s) 59, 955
BpiI GAAGAC 1 cut(s) 508
BplI GAGNNNNNCTC 2 cut(s) 851, 883
Bpu14I TTCGAA 1 cut(s) 1037
BpuEI CTTGAG 2 cut(s) 217, 451
BsaJI CCNNGG 2 cut(s) 39, 57
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 838, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 807
Bse1I ACTGG 2 cut(s) 782, 916
Bse3DI GCAATG 4 cut(s) 11, 137, 824, 922
BseBI CCWGG 2 cut(s) 59, 955
BseDI CCNNGG 2 cut(s) 39, 57
BseLI CCNNNNNNNGG 2 cut(s) 471, 807
BseMI GCAATG 4 cut(s) 11, 137, 824, 922
BseMII CTCAG 1 cut(s) 679
BseNI ACTGG 2 cut(s) 782, 916
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 4 cut(s) 28, 255, 277, 583
BsgI GTGCAG 2 cut(s) 690, 694
BshFI GGCC 3 cut(s) 278, 372, 579
BsiHKAI GWGCWC 2 cut(s) 660, 1008
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 2 cut(s) 471, 807
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 3 cut(s) 278, 372, 579
Bsp119I TTCGAA 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 660, 1008
Bsp1407I TGTACA 1 cut(s) 324
Bsp143I GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 442
BspANI GGCC 3 cut(s) 278, 372, 579
BspCNI CTCAG 1 cut(s) 678
BspLI GGNNCC 1 cut(s) 724
BspPI GGATC 3 cut(s) 968, 980, 1022
BspQI GCTCTTC 2 cut(s) 549, 788
BspT104I TTCGAA 1 cut(s) 1037
BsrBI CCGCTC 1 cut(s) 442
BsrDI GCAATG 4 cut(s) 11, 137, 824, 922
BsrGI TGTACA 1 cut(s) 324
BsrI ACTGG 2 cut(s) 782, 916
BssECI CCNNGG 2 cut(s) 39, 57
BssMI GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 59, 955
Bst4CI ACNGT 2 cut(s) 412, 715
Bst6I CTCTTC 5 cut(s) 409, 549, 740, 788, 923
BstAUI TGTACA 1 cut(s) 324
BstBI TTCGAA 1 cut(s) 1037
BstC8I GCNNGC 3 cut(s) 291, 319, 876
BstDEI CTNAG 2 cut(s) 389, 665
BstDSI CCRYGG 1 cut(s) 39
BstKTI GATC 9 cut(s) 91, 166, 175, 219, 486, 886, 963, 975, 1017
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
BstMWI GCNNNNNNNGC 2 cut(s) 318, 602
BstNI CCWGG 2 cut(s) 59, 955
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 57, 953
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 28, 255, 277, 583
BstV2I GAAGAC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 483
BstXI CCANNNNNNTGG 2 cut(s) 187, 777
BstYI RGATCY 1 cut(s) 483
BsuI GTATCC 1 cut(s) 822
BsuRI GGCC 3 cut(s) 278, 372, 579
BtgI CCRYGG 1 cut(s) 39
BtsI GCAGTG 2 cut(s) 284, 543
BtsIMutI CAGTG 4 cut(s) 284, 543, 673, 909
Cac8I GCNNGC 3 cut(s) 291, 319, 876
CsiI ACCWGGT 1 cut(s) 953
Csp6I GTAC 2 cut(s) 325, 790
CviQI GTAC 2 cut(s) 325, 790
DdeI CTNAG 2 cut(s) 389, 665
DpnI GATC 9 cut(s) 90, 165, 174, 218, 485, 885, 962, 974, 1016
DpnII GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
DraIII CACNNNGTG 1 cut(s) 957
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 5 cut(s) 409, 549, 740, 788, 923
EarI CTCTTC 5 cut(s) 409, 549, 740, 788, 923
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 2 cut(s) 372, 579
Eco57I CTGAAG 1 cut(s) 947
EcoRII CCWGG 2 cut(s) 57, 953
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FaqI GGGAC 1 cut(s) 951
FbaI TGATCA 3 cut(s) 88, 172, 883
Fnu4HI GCNGC 5 cut(s) 17, 266, 269, 443, 597
Fsp4HI GCNGC 5 cut(s) 17, 266, 269, 443, 597
FspBI CTAG 5 cut(s) 29, 84, 368, 645, 653
GluI GCNGC 5 cut(s) 17, 266, 269, 443, 597
HaeIII GGCC 3 cut(s) 278, 372, 579
HinfI GANTC 3 cut(s) 32, 65, 931
HphI GGTGA 2 cut(s) 86, 203
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 756, 898
Hpy188III TCNNGA 5 cut(s) 75, 234, 437, 680, 693
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 6 cut(s) 144, 344, 443, 597, 736, 1023
HpyCH4III ACNGT 2 cut(s) 412, 715
HpyCH4V TGCA 7 cut(s) 4, 16, 289, 536, 605, 671, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 602
HpyF3I CTNAG 2 cut(s) 389, 665
Ksp22I TGATCA 3 cut(s) 88, 172, 883
Kzo9I GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
LguI GCTCTTC 2 cut(s) 549, 788
LmnI GCTCC 1 cut(s) 722
Lsp1109I GCAGC 4 cut(s) 28, 255, 277, 583
MabI ACCWGGT 1 cut(s) 953
MaeI CTAG 5 cut(s) 29, 84, 368, 645, 653
MalI GATC 9 cut(s) 90, 165, 174, 218, 485, 885, 962, 974, 1016
MbiI CCGCTC 1 cut(s) 442
MboI GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 660, 1008
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 5 cut(s) 6, 205, 249, 887, 1047
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 3 cut(s) 280, 798, 992
MnlI CCTC 9 cut(s) 108, 296, 330, 383, 475, 499, 590, 743, 904
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 1033
MscI TGGCCA 1 cut(s) 278
MseI TTAA 3 cut(s) 452, 996, 1051
MslI CAYNNNNRTG 4 cut(s) 99, 332, 617, 879
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 59, 955
MvaI CCWGG 2 cut(s) 59, 955
MwoI GCNNNNNNNGC 2 cut(s) 318, 602
NcoI CCATGG 1 cut(s) 39
NdeII GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
NlaIV GGNNCC 1 cut(s) 724
NspI RCATGY 1 cut(s) 878
NspV TTCGAA 1 cut(s) 1037
OliI CACNNNNGTG 1 cut(s) 617
PaeI GCATGC 1 cut(s) 878
PceI AGGCCT 2 cut(s) 372, 579
PciSI GCTCTTC 2 cut(s) 549, 788
PdmI GAANNNNTTC 1 cut(s) 1033
PfeI GAWTC 2 cut(s) 32, 65
PkrI GCNGC 5 cut(s) 18, 267, 270, 444, 598
PleI GAGTC 1 cut(s) 939
PpsI GAGTC 1 cut(s) 939
PsiI TTATAA 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 57, 953
PspGI CCWGG 2 cut(s) 57, 953
PspN4I GGNNCC 1 cut(s) 724
PsuI RGATCY 1 cut(s) 483
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 326, 791
RsaNI GTAC 2 cut(s) 325, 790
RseI CAYNNNNRTG 4 cut(s) 99, 332, 617, 879
SapI GCTCTTC 2 cut(s) 549, 788
SaqAI TTAA 3 cut(s) 452, 996, 1051
SatI GCNGC 5 cut(s) 17, 266, 269, 443, 597
Sau3AI GATC 9 cut(s) 88, 163, 172, 216, 483, 883, 960, 972, 1014
SchI GAGTC 1 cut(s) 940
ScrFI CCNGG 2 cut(s) 59, 955
SduI GDGCHC 2 cut(s) 660, 1008
SetI ASST 6 cut(s) 21, 270, 295, 307, 812, 959
SexAI ACCWGGT 1 cut(s) 953
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 1037
SmiMI CAYNNNNRTG 4 cut(s) 99, 332, 617, 879
SmlI CTYRAG 2 cut(s) 232, 466
SmoI CTYRAG 2 cut(s) 232, 466
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 878
Sse9I AATT 5 cut(s) 6, 205, 249, 887, 1047
SseBI AGGCCT 2 cut(s) 372, 579
SsiI CCGC 1 cut(s) 442
SspMI CTAG 5 cut(s) 29, 84, 368, 645, 653
StuI AGGCCT 2 cut(s) 372, 579
StyD4I CCNGG 2 cut(s) 57, 953
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 412, 715
TaqI TCGA 3 cut(s) 1000, 1027, 1037
TasI AATT 5 cut(s) 6, 205, 249, 887, 1047
TatI WGTACW 2 cut(s) 324, 789
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 2 cut(s) 32, 65
Tru1I TTAA 3 cut(s) 452, 996, 1051
Tru9I TTAA 3 cut(s) 452, 996, 1051
TscAI CASTG 4 cut(s) 291, 543, 673, 916
TseI GCWGC 4 cut(s) 16, 265, 268, 596
TspDTI ATGAA 7 cut(s) 57, 126, 360, 470, 676, 739, 775
TspGWI ACGGA 1 cut(s) 804
TspRI CASTG 4 cut(s) 291, 543, 673, 916
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 1033
XspI CTAG 5 cut(s) 29, 84, 368, 645, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.