Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006805

Physical Location & Seq

Genomic Coordinates Forward (+)

23442388 .. 23443432

Gene Structure 1045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACTTGGGGCATAACACTTTCAGTTTCTCAACTGCTGCAAAAGCCTAAGCCTGTTGCCATACTCAAGTCAGTCTGTTTTGTTGCAAAAAGTAGTGAAATACTTGCCATTGTTGGCCCGAGTGGCACCGGAAAATCTACCCTCCTGCGGATAATATCGGGGAGGGTGAAAGATGAAGACTACAATCCCAAAAGTGTCTCCATTAATGATCATCAGATAACTAGTCCTGCTCAGTTGCGCAAAATATGTGGATTTGTTGCACAAGAAGATAATCTGCTTCCCCTACTGACTGTGAAGGAGACTTTGATGTTCACTGCTAAGTTTCGACTTAAAGGCATTGATGCAAAAGAGAGGGTGGAGAGCTTAATGCAAGAGCTTGGTCTTCTCCATGTCTCCGATAGCTATGTGGGAGATGAAGAGAATAGAGGGATATCTGGTGGAGAAAGGAAAAGGGTATCTACAGGTGTCGATATGATTCATGATCCACCTATTTTGCTTCTTGATGAGCCGACTTCAGGCCTAGACAGCACTTCGGCACTTCAAGTTATAGAGCTTCTTTCTATAATGGCCAAATCAAAGCAAAGAACCGTGCTTTTATCAATACACCAACCAAGCTATAGAATTCTTCATCACATCTCCAACTTTCTGATCCTCTCCCATGGTTCTGTTGTCCATAATGGGAGCATTGAATTACTCGAAGAAACTATAGGTAATCTTGGAATGCAAATTCCATTGCAGCTCAATGCCCTAGAATTTGCCATGGAAGTTATAAAAACCCTGGAAGATTCATATTCCAGAAGCACTAGTGATCATCACCCTAAACCCTCATGCTACAGAAAACAAAGAACCATGCTCCTACCCTTCATTGCCAGAAATAGAAATCGGCAGAGATCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

299

Amino Acids

33.21

Weight (kDa)

8.9

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	23 - 172	3.7e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19410 AT5G19410
fragaria_vesca	FvH4_5g29200
malus_domestica	MD11G1185400.v1.1
prunus_persica	Prupe.4G266200_v2.0.a1
pyrus_communis	pycom12g08770
rosa_chinensis	RchiOBHm_Chr1g0332261 RchiOBHm_Chr1g0332281 RchiOBHm_Chr7g0221951
rosa_laevigata	RLG00000002108 RLG00000029681
rosa_multiflora	Rmu_sc0000834.1_g000025 Rmu_sc0003422.1_g000001 Rmu_sc0004325.1_g000028
rosa_roxburghii	Rroxscaffold_3G00237570
rosa_rugosa	Rorug01G0099800 Rorug07G0204400
rosa_samantha	Rh1AG123500 Rh1AG123600 Rh1DG128800 Rh7AG345200 Rh7BG335700 Rh7CG362600 Rh7DG342700
rosa_wichuraiana	Rw1G010060 Rw7G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
Acc16I	TGCGCA	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	2 cut(s)	476, 643
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	3 cut(s)	621, 726, 752
AcuI	CTGAAG	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	147, 515
AgsI	TTSAA	2 cut(s)	542, 689
AhlI	ACTAGT	2 cut(s)	221, 803
AjnI	CCWGG	1 cut(s)	777
AluBI	AGCT	6 cut(s)	363, 376, 402, 553, 615, 739
AluI	AGCT	6 cut(s)	363, 376, 402, 553, 615, 739
Alw26I	GTCTC	3 cut(s)	202, 293, 397
AlwI	GGATC	2 cut(s)	476, 643
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	115, 517, 567
ApeKI	GCWGC	2 cut(s)	37, 736
ApoI	RAATTY	3 cut(s)	621, 726, 752
AseI	ATTAAT	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	178, 806
AvaI	CYCGRG	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	183, 374
BbvI	GCAGC	2 cut(s)	24, 748
BciT130I	CCWGG	1 cut(s)	779
BclI	TGATCA	2 cut(s)	208, 808
BcoDI	GTCTC	3 cut(s)	202, 293, 397
BcuI	ACTAGT	2 cut(s)	221, 803
BfaI	CTAG	4 cut(s)	222, 521, 749, 804
BfmI	CTRYAG	4 cut(s)	459, 616, 705, 832
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	38, 737
BlsI	GCNGC	2 cut(s)	39, 738
Bme1390I	CCNGG	1 cut(s)	779
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	183, 374
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	658, 759, 777
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 515
Bse3DI	GCAATG	2 cut(s)	731, 864
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	3 cut(s)	658, 759, 777
BseLI	CCNNNNNNNGG	2 cut(s)	147, 515
BseMI	GCAATG	2 cut(s)	731, 864
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	24, 748
BshFI	GGCC	3 cut(s)	117, 519, 569
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	147, 515
BsmAI	GTCTC	3 cut(s)	202, 293, 397
BsmI	GAATGC	1 cut(s)	726
BsnI	GGCC	3 cut(s)	117, 519, 569
BsoBI	CYCGRG	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	208, 481, 648, 808, 890
Bsp19I	CCATGG	2 cut(s)	658, 759
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	3 cut(s)	117, 519, 569
BspCNI	CTCAG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	476, 643
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	731, 864
BssECI	CCNNGG	3 cut(s)	658, 759, 777
BssMI	GATC	5 cut(s)	208, 481, 648, 808, 890
BssT1I	CCWWGG	2 cut(s)	658, 759
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	292, 589
Bst6I	CTCTTC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	48, 231, 318
BstDSI	CCRYGG	2 cut(s)	658, 759
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	5 cut(s)	211, 484, 651, 811, 893
BstMAI	GTCTC	3 cut(s)	202, 293, 397
BstMBI	GATC	5 cut(s)	208, 481, 648, 808, 890
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 123, 525
BstNI	CCWGG	1 cut(s)	779
BstSCI	CCNGG	1 cut(s)	777
BstSFI	CTRYAG	4 cut(s)	459, 616, 705, 832
BstV1I	GCAGC	2 cut(s)	24, 748
BstV2I	GAAGAC	2 cut(s)	183, 374
BsuRI	GGCC	3 cut(s)	117, 519, 569
BtgI	CCRYGG	2 cut(s)	658, 759
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	116
CspCI	CAANNNNNGTGG	4 cut(s)	229, 264, 474, 509
CviAII	CATG	7 cut(s)	389, 479, 659, 760, 828, 850, 897
DdeI	CTNAG	3 cut(s)	48, 231, 318
DpnI	GATC	5 cut(s)	210, 483, 650, 810, 892
DpnII	GATC	5 cut(s)	208, 481, 648, 808, 890
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	658, 759
Eco147I	AGGCCT	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	777
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	658, 759
ErhI	CCWWGG	2 cut(s)	658, 759
FaeI	CATG	7 cut(s)	392, 482, 662, 763, 831, 853, 900
FatI	CATG	7 cut(s)	388, 478, 658, 759, 827, 849, 896
FbaI	TGATCA	2 cut(s)	208, 808
Fnu4HI	GCNGC	2 cut(s)	38, 737
Fsp4HI	GCNGC	2 cut(s)	38, 737
FspBI	CTAG	4 cut(s)	222, 521, 749, 804
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	38, 737
HaeIII	GGCC	3 cut(s)	117, 519, 569
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	7 cut(s)	392, 482, 662, 763, 831, 853, 900
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	475, 785
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	178, 806
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	3 cut(s)	216, 397, 648
Hpy188III	TCNNGA	3 cut(s)	479, 500, 795
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	289, 871
HpyCH4III	ACNGT	2 cut(s)	292, 589
HpyCH4V	TGCA	7 cut(s)	40, 86, 260, 344, 370, 724, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 123, 525
HpyF3I	CTNAG	3 cut(s)	48, 231, 318
Hsp92II	CATG	7 cut(s)	392, 482, 662, 763, 831, 853, 900
HspAI	GCGC	1 cut(s)	238
Ksp22I	TGATCA	2 cut(s)	208, 808
Kzo9I	GATC	5 cut(s)	208, 481, 648, 808, 890
LmnI	GCTCC	2 cut(s)	681, 858
Lsp1109I	GCAGC	2 cut(s)	24, 748
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	4 cut(s)	222, 521, 749, 804
MalI	GATC	5 cut(s)	210, 483, 650, 810, 892
MboI	GATC	5 cut(s)	208, 481, 648, 808, 890
MboII	GAAGA	7 cut(s)	188, 278, 374, 428, 617, 710, 794
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	4 cut(s)	621, 689, 726, 752
MluNI	TGGCCA	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	6 cut(s)	152, 156, 345, 419, 662, 835
Mox20I	TGGCCA	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	3 cut(s)	204, 330, 365
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	779
MwoI	GCNNNNNNNGC	3 cut(s)	43, 123, 525
NcoI	CCATGG	2 cut(s)	658, 759
NdeII	GATC	5 cut(s)	208, 481, 648, 808, 890
NlaIII	CATG	7 cut(s)	392, 482, 662, 763, 831, 853, 900
NlaIV	GGNNCC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	239
PagI	TCATGA	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	475, 785
PkrI	GCNGC	2 cut(s)	39, 738
PshBI	ATTAAT	1 cut(s)	204
PsiI	TTATAA	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	204, 330, 365
SatI	GCNGC	2 cut(s)	38, 737
Sau3AI	GATC	5 cut(s)	208, 481, 648, 808, 890
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	779
SetI	ASST	9 cut(s)	365, 378, 404, 466, 490, 555, 617, 712, 741
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	4 cut(s)	459, 616, 705, 832
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SpeI	ACTAGT	2 cut(s)	221, 803
Sse9I	AATT	4 cut(s)	621, 689, 726, 752
SseBI	AGGCCT	1 cut(s)	519
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	4 cut(s)	222, 521, 749, 804
StuI	AGGCCT	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	777
StyI	CCWWGG	2 cut(s)	658, 759
TaaI	ACNGT	2 cut(s)	292, 589
TaqI	TCGA	3 cut(s)	325, 468, 696
TasI	AATT	4 cut(s)	621, 689, 726, 752
TfiI	GAWTC	2 cut(s)	475, 785
Tru1I	TTAA	3 cut(s)	204, 330, 365
Tru9I	TTAA	3 cut(s)	204, 330, 365
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	37, 736
TspDTI	ATGAA	6 cut(s)	189, 429, 467, 617, 777, 853
TspRI	CASTG	1 cut(s)	319
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	3 cut(s)	621, 726, 752
XspI	CTAG	4 cut(s)	222, 521, 749, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.