Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004325.1

Orthogroup ID

OG0006805

Physical Location & Seq

Genomic Coordinates Reverse (-)

156575 .. 158212

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004325.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ctgcgaataatatcggggagggtgaaagatgaagactacaatcccaaaagtgtctccattaacgatcatcagataactggtcctgctcagttgcgcaaaatatgcggatttgttgcacaagaagataatctgcttcccctactgactgtgaaagagactttgctgttcactgccaagtttcggcttaaaggcattgatgcaagagagagggaagagagggtggagagtttaatgcaagagcttggtcttctccatgtctcgaatagctttgtgggagatgaagaaaacagagggatatctggtggagaaaggaaaagggtatctataggtgtcgatatgattcatgatccacctattttgcttcttgatgagccaacttcaggcctagacagcacttcggcacttcaagttatagagcttctttctataatggccaaatcaaagcaaagaaccgtggttttatcaatacaccaaccaagctatagaattcttcatcacatctccaactttttgatcctctcccatggttctgttgtccataatgggaacattgaattactcgaagaaactataggtaatcttggaatgcaagttccattgcagctcaatgccctagaatttgccatggaagttataaaaaccctggaagattcatattccaaaagcactagtgatcatcaccctcatgctacagaaaacaaagaaccatactcctacccttcattgccagaaatagaaattggcagagatcaacacgatcaaaccaaaaccatgggtgactatttctctaatttatatgagatcatgtttctctgctcaagattttggaaaataatttacagaacgaagcagctgcttttggccagaacactgcaagctcttgttggaggttttggcttggcaagcgtgtacatgaaaatgaggaaagatgaagcaggcgtagcagagcgactaggcctctttgctttcagtctaagttttctactctcttccacagttgaggcattaccgatattccttcaagagcggcgagttttaatgaaagaagcctcaaggggggcttacaagatctcctcttacatgattgccaacaccattgtcttcctaccctttttatttgcagtggctcttctgttttctgttcctgtgtattggattgtaggtctcaatccttctgtggctgctttcgcatttttcactttcgtggtttggctcattgtgctgatggctagttctctagtgctctttctcagcgcagtttctcccgacttcatttcaggaaactcgcttatctgcacagtgcttggagccttcttcctcttctctggctacttcattccgaaagagagcataccaaaatactggctcttcatgtactatgtttccatttacaggtatccattggacacattgctgacaaacgagtattggagtattagtagcgagtgtttctcttggcatgctaatgatcaatttccctccgagtgtgtgctcaccggcaatgatgtgttgaagagtcggggacttgacaaggacaccaggtggatcaatgtagggatcatgtttggcttctttgtgttttatcgcatgctttgttggatcattctttgtcgaagggcttcaaaaacaacaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

545

Amino Acids

61.82

Weight (kDa)

6.39

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19410 AT5G19410
fragaria_vesca	FvH4_5g29200
malus_domestica	MD11G1185400.v1.1
prunus_persica	Prupe.4G266200_v2.0.a1
pyrus_communis	pycom12g08770
rosa_chinensis	RchiOBHm_Chr1g0332261 RchiOBHm_Chr1g0332281 RchiOBHm_Chr7g0221951
rosa_laevigata	RLG00000002108 RLG00000029681
rosa_multiflora	Rmu_sc0000834.1_g000025 Rmu_sc0003422.1_g000001 Rmu_sc0004325.1_g000028
rosa_roxburghii	Rroxscaffold_3G00237570
rosa_rugosa	Rorug01G0099800 Rorug07G0204400
rosa_samantha	Rh1AG123500 Rh1AG123600 Rh1DG128800 Rh7AG345200 Rh7BG335700 Rh7CG362600 Rh7DG342700
rosa_wichuraiana	Rw1G010060 Rw7G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
Acc16I	TGCGCA	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	1027
AciI	CCGC	2 cut(s)	105, 1027
AclWI	GGATC	5 cut(s)	341, 508, 1553, 1565, 1607
AcoI	YGGCCR	2 cut(s)	432, 861
AcsI	RAATTY	2 cut(s)	486, 617
AcuI	CTGAAG	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	1542
AfaI	GTAC	2 cut(s)	911, 1376
AfiI	CCNNNNNNNGG	4 cut(s)	180, 380, 1056, 1392
AgsI	TTSAA	5 cut(s)	407, 554, 1022, 1513, 1623
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	2 cut(s)	642, 1538
AjuI	GAANNNNNNNTTGG	2 cut(s)	723, 755
AleI	CACNNNNGTG	1 cut(s)	1202
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	7 cut(s)	241, 267, 418, 480, 604, 853, 878
AluI	AGCT	7 cut(s)	241, 267, 418, 480, 604, 853, 878
Alw21I	GWGCWC	2 cut(s)	1245, 1494
Alw26I	GTCTC	4 cut(s)	58, 149, 262, 1169
AlwI	GGATC	5 cut(s)	341, 508, 1553, 1565, 1607
AoxI	GGCC	4 cut(s)	382, 432, 861, 955
ApeKI	GCWGC	4 cut(s)	601, 850, 853, 1181
ApoI	RAATTY	2 cut(s)	486, 617
Asp700I	GAANNNNTTC	1 cut(s)	1618
AspLEI	GCGC	2 cut(s)	96, 1256
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	4 cut(s)	34, 671, 788, 1486
AvaII	GGWCC	1 cut(s)	80
BalI	TGGCCA	2 cut(s)	434, 863
BbsI	GAAGAC	3 cut(s)	39, 239, 1093
Bbv12I	GWGCWC	2 cut(s)	1245, 1494
BbvI	GCAGC	4 cut(s)	613, 840, 862, 1168
BccI	CCATC	1 cut(s)	1219
BcgI	CGANNNNNNTGC	2 cut(s)	835, 869
BciT130I	CCWGG	2 cut(s)	644, 1540
BciVI	GTATCC	1 cut(s)	1407
BclI	TGATCA	2 cut(s)	673, 1468
BcoDI	GTCTC	4 cut(s)	58, 149, 262, 1169
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	6 cut(s)	386, 614, 669, 953, 1230, 1238
BfmI	CTRYAG	4 cut(s)	324, 481, 570, 690
BfuI	GTATCC	1 cut(s)	1407
BglII	AGATCT	1 cut(s)	1068
BisI	GCNGC	5 cut(s)	602, 851, 854, 1028, 1182
BlsI	GCNGC	5 cut(s)	603, 852, 855, 1029, 1183
Bme1390I	CCNGG	2 cut(s)	644, 1540
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	1309
BmrFI	CCNGG	2 cut(s)	644, 1540
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	3 cut(s)	39, 239, 1093
BplI	GAGNNNNNCTC	2 cut(s)	1436, 1468
BpuEI	CTTGAG	2 cut(s)	802, 1036
BsaI	GGTCTC	1 cut(s)	1169
BsaJI	CCNNGG	5 cut(s)	453, 523, 624, 642, 771
BsaXI	ACNNNNNCTCC	4 cut(s)	1055, 1085, 1423, 1453
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 380, 1056, 1392
Bse118I	RCCGGY	1 cut(s)	1496
Bse1I	ACTGG	2 cut(s)	82, 1367
Bse3DI	GCAATG	4 cut(s)	596, 722, 1409, 1507
BseBI	CCWGG	2 cut(s)	644, 1540
BseDI	CCNNGG	5 cut(s)	453, 523, 624, 642, 771
BseLI	CCNNNNNNNGG	4 cut(s)	180, 380, 1056, 1392
BseMI	GCAATG	4 cut(s)	596, 722, 1409, 1507
BseMII	CTCAG	2 cut(s)	101, 1264
BseNI	ACTGG	2 cut(s)	82, 1367
BseRI	GAGGAG	1 cut(s)	1063
BseXI	GCAGC	4 cut(s)	613, 840, 862, 1168
BsgI	GTGCAG	1 cut(s)	1279
BshFI	GGCC	4 cut(s)	384, 434, 863, 957
BsiHKAI	GWGCWC	2 cut(s)	1245, 1494
BsiSI	CCGG	1 cut(s)	1497
BslFI	GGGAC	1 cut(s)	1536
BslI	CCNNNNNNNGG	4 cut(s)	180, 380, 1056, 1392
BsmAI	GTCTC	4 cut(s)	58, 149, 262, 1169
BsmFI	GGGAC	1 cut(s)	1536
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	4 cut(s)	384, 434, 863, 957
Bso31I	GGTCTC	1 cut(s)	1169
Bsp1286I	GDGCHC	2 cut(s)	1245, 1494
Bsp1407I	TGTACA	1 cut(s)	909
Bsp19I	CCATGG	3 cut(s)	523, 624, 771
BspACI	CCGC	2 cut(s)	105, 1027
BspANI	GGCC	4 cut(s)	384, 434, 863, 957
BspCNI	CTCAG	2 cut(s)	100, 1263
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	1309
BspPI	GGATC	5 cut(s)	341, 508, 1553, 1565, 1607
BspQI	GCTCTTC	2 cut(s)	1134, 1373
BspTNI	GGTCTC	1 cut(s)	1169
BsrBI	CCGCTC	1 cut(s)	1027
BsrDI	GCAATG	4 cut(s)	596, 722, 1409, 1507
BsrFI	RCCGGY	1 cut(s)	1496
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	82, 1367
BssAI	RCCGGY	1 cut(s)	1496
BssECI	CCNNGG	5 cut(s)	453, 523, 624, 642, 771
BssT1I	CCWWGG	3 cut(s)	523, 624, 771
Bst2UI	CCWGG	2 cut(s)	644, 1540
Bst4CI	ACNGT	4 cut(s)	148, 454, 997, 1300
Bst6I	CTCTTC	6 cut(s)	207, 994, 1134, 1325, 1373, 1508
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	909
BstC8I	GCNNGC	5 cut(s)	876, 904, 937, 1461, 1589
BstDEI	CTNAG	3 cut(s)	87, 974, 1250
BstDSI	CCRYGG	4 cut(s)	453, 523, 624, 771
BstHHI	GCGC	2 cut(s)	96, 1256
BstMAI	GTCTC	4 cut(s)	58, 149, 262, 1169
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 390, 903, 941, 1187, 1219
BstNI	CCWGG	2 cut(s)	644, 1540
BstNSI	RCATGY	2 cut(s)	1463, 1591
BstSCI	CCNGG	2 cut(s)	642, 1538
BstSFI	CTRYAG	4 cut(s)	324, 481, 570, 690
BstV1I	GCAGC	4 cut(s)	613, 840, 862, 1168
BstV2I	GAAGAC	3 cut(s)	39, 239, 1093
BstX2I	RGATCY	1 cut(s)	1068
BstXI	CCANNNNNNTGG	2 cut(s)	772, 1362
BstYI	RGATCY	1 cut(s)	1068
BsuI	GTATCC	1 cut(s)	1407
BsuRI	GGCC	4 cut(s)	384, 434, 863, 957
BtgI	CCRYGG	4 cut(s)	453, 523, 624, 771
BtsI	GCAGTG	3 cut(s)	168, 869, 1128
BtsIMutI	CAGTG	4 cut(s)	168, 869, 1128, 1305
Cac8I	GCNNGC	5 cut(s)	876, 904, 937, 1461, 1589
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	96, 1256
Cfr10I	RCCGGY	1 cut(s)	1496
Cfr13I	GGNCC	1 cut(s)	80
CsiI	ACCWGGT	1 cut(s)	1538
Csp6I	GTAC	2 cut(s)	910, 1375
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviQI	GTAC	2 cut(s)	910, 1375
DdeI	CTNAG	3 cut(s)	87, 974, 1250
DraIII	CACNNNGTG	1 cut(s)	1542
EaeI	YGGCCR	2 cut(s)	432, 861
Eam1104I	CTCTTC	6 cut(s)	207, 994, 1134, 1325, 1373, 1508
EarI	CTCTTC	6 cut(s)	207, 994, 1134, 1325, 1373, 1508
Eco130I	CCWWGG	3 cut(s)	523, 624, 771
Eco147I	AGGCCT	2 cut(s)	384, 957
Eco31I	GGTCTC	1 cut(s)	1169
Eco32I	GATATC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	642, 1538
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	3 cut(s)	523, 624, 771
ErhI	CCWWGG	3 cut(s)	523, 624, 771
FalI	AAGNNNNNCTT	2 cut(s)	1045, 1077
FaqI	GGGAC	1 cut(s)	1536
FbaI	TGATCA	2 cut(s)	673, 1468
Fnu4HI	GCNGC	5 cut(s)	602, 851, 854, 1028, 1182
Fsp4HI	GCNGC	5 cut(s)	602, 851, 854, 1028, 1182
FspBI	CTAG	6 cut(s)	386, 614, 669, 953, 1230, 1238
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	2 cut(s)	95, 1255
GluI	GCNGC	5 cut(s)	602, 851, 854, 1028, 1182
HaeIII	GGCC	4 cut(s)	384, 434, 863, 957
HapII	CCGG	1 cut(s)	1497
HhaI	GCGC	2 cut(s)	96, 1256
Hin6I	GCGC	2 cut(s)	94, 1254
HinP1I	GCGC	2 cut(s)	94, 1254
HinfI	GANTC	3 cut(s)	340, 650, 1516
HpaII	CCGG	1 cut(s)	1497
HphI	GGTGA	4 cut(s)	34, 671, 788, 1486
Hpy166II	GTNNAC	2 cut(s)	168, 910
Hpy188I	TCNGA	3 cut(s)	72, 1341, 1483
Hpy188III	TCNNGA	7 cut(s)	259, 344, 365, 819, 1022, 1265, 1278
Hpy8I	GTNNAC	2 cut(s)	168, 910
HpyAV	CCTTC	5 cut(s)	729, 1028, 1182, 1321, 1608
HpyCH4III	ACNGT	4 cut(s)	148, 454, 997, 1300
HpyCH4V	TGCA	8 cut(s)	116, 200, 235, 589, 601, 874, 1121, 1296
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 390, 903, 941, 1187, 1219
HpyF3I	CTNAG	3 cut(s)	87, 974, 1250
HspAI	GCGC	2 cut(s)	94, 1254
Ksp22I	TGATCA	2 cut(s)	673, 1468
LguI	GCTCTTC	2 cut(s)	1134, 1373
LmnI	GCTCC	1 cut(s)	1307
Lsp1109I	GCAGC	4 cut(s)	613, 840, 862, 1168
LweI	GCATC	1 cut(s)	187
MabI	ACCWGGT	1 cut(s)	1538
MaeI	CTAG	6 cut(s)	386, 614, 669, 953, 1230, 1238
MaeIII	GTNAC	1 cut(s)	776
MbiI	CCGCTC	1 cut(s)	1027
MflI	RGATCY	1 cut(s)	1068
MhlI	GDGCHC	2 cut(s)	1245, 1494
MlsI	TGGCCA	2 cut(s)	434, 863
MluCI	AATT	8 cut(s)	486, 554, 617, 738, 790, 834, 1472, 1632
MluNI	TGGCCA	2 cut(s)	434, 863
MlyI	GAGTC	1 cut(s)	1525
MmeI	TCCRAC	3 cut(s)	528, 865, 1577
Mox20I	TGGCCA	2 cut(s)	434, 863
MroXI	GAANNNNTTC	1 cut(s)	1618
MscI	TGGCCA	2 cut(s)	434, 863
MseI	TTAA	5 cut(s)	60, 186, 230, 1037, 1636
MslI	CAYNNNNRTG	4 cut(s)	684, 917, 1202, 1464
Msp20I	TGGCCA	2 cut(s)	434, 863
MspA1I	CMGCKG	1 cut(s)	853
MspI	CCGG	1 cut(s)	1497
MspR9I	CCNGG	2 cut(s)	644, 1540
Mva1269I	GAATGC	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	644, 1540
MwoI	GCNNNNNNNGC	6 cut(s)	102, 390, 903, 941, 1187, 1219
NcoI	CCATGG	3 cut(s)	523, 624, 771
NlaIV	GGNNCC	1 cut(s)	1309
NmuCI	GTSAC	1 cut(s)	776
NsbI	TGCGCA	1 cut(s)	95
NspI	RCATGY	2 cut(s)	1463, 1591
OliI	CACNNNNGTG	1 cut(s)	1202
PaeI	GCATGC	2 cut(s)	1463, 1591
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	2 cut(s)	384, 957
PciSI	GCTCTTC	2 cut(s)	1134, 1373
PctI	GAATGC	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	1618
PfeI	GAWTC	2 cut(s)	340, 650
PkrI	GCNGC	5 cut(s)	603, 852, 855, 1029, 1183
PleI	GAGTC	1 cut(s)	1524
PpsI	GAGTC	1 cut(s)	1524
PsiI	TTATAA	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	642, 1538
PspGI	CCWGG	2 cut(s)	642, 1538
PspN4I	GGNNCC	1 cut(s)	1309
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	1068
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	2 cut(s)	911, 1376
RsaNI	GTAC	2 cut(s)	910, 1375
RseI	CAYNNNNRTG	4 cut(s)	684, 917, 1202, 1464
SapI	GCTCTTC	2 cut(s)	1134, 1373
SaqAI	TTAA	5 cut(s)	60, 186, 230, 1037, 1636
SatI	GCNGC	5 cut(s)	602, 851, 854, 1028, 1182
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	1525
ScrFI	CCNGG	2 cut(s)	644, 1540
SduI	GDGCHC	2 cut(s)	1245, 1494
SexAI	ACCWGGT	1 cut(s)	1538
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	4 cut(s)	324, 481, 570, 690
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	4 cut(s)	684, 917, 1202, 1464
SmlI	CTYRAG	2 cut(s)	817, 1051
SmoI	CTYRAG	2 cut(s)	817, 1051
SpeI	ACTAGT	1 cut(s)	668
SphI	GCATGC	2 cut(s)	1463, 1591
Sse9I	AATT	8 cut(s)	486, 554, 617, 738, 790, 834, 1472, 1632
SseBI	AGGCCT	2 cut(s)	384, 957
SsiI	CCGC	2 cut(s)	105, 1027
SspMI	CTAG	6 cut(s)	386, 614, 669, 953, 1230, 1238
StuI	AGGCCT	2 cut(s)	384, 957
StyD4I	CCNGG	2 cut(s)	642, 1538
StyI	CCWWGG	3 cut(s)	523, 624, 771
TaaI	ACNGT	4 cut(s)	148, 454, 997, 1300
TaqI	TCGA	4 cut(s)	260, 333, 561, 1612
TasI	AATT	8 cut(s)	486, 554, 617, 738, 790, 834, 1472, 1632
TatI	WGTACW	2 cut(s)	909, 1374
TauI	GCSGC	1 cut(s)	1030
TfiI	GAWTC	2 cut(s)	340, 650
Tru1I	TTAA	5 cut(s)	60, 186, 230, 1037, 1636
Tru9I	TTAA	5 cut(s)	60, 186, 230, 1037, 1636
TscAI	CASTG	4 cut(s)	175, 876, 1128, 1305
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	4 cut(s)	601, 850, 853, 1181
Tsp45I	GTSAC	1 cut(s)	776
TspRI	CASTG	4 cut(s)	175, 876, 1128, 1305
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	486, 617
XceI	RCATGY	2 cut(s)	1463, 1591
XmnI	GAANNNNTTC	1 cut(s)	1618
XspI	CTAG	6 cut(s)	386, 614, 669, 953, 1230, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.