Rh1AG123500

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006805
Physical Location & Seq
Forward (+)
23090617 .. 23091313
697 bp
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UTR
Exon/CDS
Intron
Rh1AG123500.1

Sequence Viewer

Length: 633 bp
ATGACTGGAGATGACTTGGTGATTCTCTTTTCTACCTCAAACTCCCCTGAACAATATACCACCACCCCGTCCTCTTCTTCCTACCACTCATCACCACCATCACCCCAACATTGCATTAACCCAACTTACAATCTCACTGTACACAACCTCTCCTACACTTATCTCCCAAATAGGGGCATAACACTTTCAGTTTCTCAACTGCTGCAAAAGCCTAAGCCTGTTGCCATACTCAAGTCAGTCTGTTTTGTTGCAAAAAGTTGTGAAATACTTGCCATTGTTGGCCCGAGCGGCACCGGAAAATCTACCCTCCTGCGGATAATATCGGGGAGGGTGAAAGATGAAGACTACAATCCCAAAAGTGTCTCCATTAATGATCATCAGATAACTAGTCCTGCTCAGTTGCGCAAAATATGTGGATTTGTTGCACAAGAAGATAATCTGCTTCCCCTACTGACTGTGAAGGAGACTTTGATGTTCACTGCTAAGTTTCGACTTAAAGGCATTGATGCAAAAGAGAGGGAAGAGAGGGTGGAGAGCTTAATGCAAGAGCTTGGTCTTCTCCACGTCTCCGATAGCTATGTGGGAGATGAAGAGAATAGAGGGATATCTGGTGGAGAAAGGAAAAGGGCCTAG

Protein Analysis

210

Amino Acids

23.11

Weight (kDa)

7.68

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 78 - 209 4.9e-20 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 288
AciI CCGC 2 cut(s) 288, 313
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 172, 173, 312
AhlI ACTAGT 1 cut(s) 386
AjiI CACGTC 1 cut(s) 565
AluBI AGCT 3 cut(s) 537, 550, 576
AluI AGCT 3 cut(s) 537, 550, 576
Alw26I GTCTC 3 cut(s) 367, 458, 571
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 2 cut(s) 280, 627
ApeKI GCWGC 1 cut(s) 202
AseI ATTAAT 1 cut(s) 369
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 2 cut(s) 281, 627
AsuHPI GGTGA 4 cut(s) 31, 84, 93, 343
AvaI CYCGRG 1 cut(s) 283
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 2 cut(s) 348, 548
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 106
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 3 cut(s) 367, 458, 571
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 2 cut(s) 387, 631
BglI GCCNNNNNGGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 203, 289
BlsI GCNGC 2 cut(s) 204, 290
BmeT110I CYCGRG 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 2 cut(s) 281, 627
BmiI GGNNCC 1 cut(s) 292
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 2 cut(s) 348, 548
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 173, 312
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 109
BseLI CCNNNNNNNGG 3 cut(s) 172, 173, 312
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 2 cut(s) 282, 629
BshNI GGYRCC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 172, 173, 312
BsmAI GTCTC 3 cut(s) 367, 458, 571
BsmBI CGTCTC 1 cut(s) 571
BsnI GGCC 2 cut(s) 282, 629
BsoBI CYCGRG 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 2 cut(s) 288, 313
BspANI GGCC 2 cut(s) 282, 629
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 292
BspT107I GGYRCC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 109
BsrGI TGTACA 1 cut(s) 139
BsrI ACTGG 1 cut(s) 10
BssMI GATC 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 139, 457
Bst6I CTCTTC 3 cut(s) 79, 516, 585
BstAUI TGTACA 1 cut(s) 139
BstDEI CTNAG 3 cut(s) 213, 396, 483
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 3 cut(s) 367, 458, 571
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 208, 288
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 2 cut(s) 348, 548
BsuRI GGCC 2 cut(s) 282, 629
BtrI CACGTC 1 cut(s) 565
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 135, 477
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 281, 627
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviJI RGCY 7 cut(s) 211, 217, 282, 537, 550, 576, 629
CviKI_1 RGCY 7 cut(s) 211, 217, 282, 537, 550, 576, 629
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 3 cut(s) 213, 396, 483
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 79, 516, 585
EarI CTCTTC 3 cut(s) 79, 516, 585
Eco32I GATATC 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 627
EcoRV GATATC 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 571
FaiI YATR 5 cut(s) 57, 179, 227, 412, 579
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 203, 289
Fsp4HI GCNGC 2 cut(s) 203, 289
FspBI CTAG 2 cut(s) 387, 631
FspI TGCGCA 1 cut(s) 404
GlaI GCGC 1 cut(s) 404
GluI GCNGC 2 cut(s) 203, 289
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 282, 629
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 405
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 294
HphI GGTGA 4 cut(s) 31, 84, 93, 343
Hpy166II GTNNAC 2 cut(s) 142, 477
Hpy188I TCNGA 2 cut(s) 381, 571
Hpy8I GTNNAC 2 cut(s) 142, 477
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 2 cut(s) 139, 457
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 6 cut(s) 114, 205, 251, 425, 509, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 288
HpyF3I CTNAG 3 cut(s) 213, 396, 483
HpySE526I ACGT 1 cut(s) 564
HspAI GCGC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 60, 231, 307, 323, 405, 594
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 387, 631
MaeII ACGT 1 cut(s) 564
MalI GATC 1 cut(s) 375
MbiI CCGCTC 1 cut(s) 288
MboI GATC 1 cut(s) 373
MboII GAAGA 7 cut(s) 66, 69, 353, 443, 533, 548, 602
MnlI CCTC 8 cut(s) 46, 82, 158, 317, 321, 510, 519, 593
MseI TTAA 4 cut(s) 117, 369, 495, 539
MspI CCGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 208, 288
NdeII GATC 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 404
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 204, 290
PshBI ATTAAT 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 281, 627
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 117, 369, 495, 539
SatI GCNGC 2 cut(s) 203, 289
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 2 cut(s) 281, 627
SetI ASST 6 cut(s) 38, 150, 539, 552, 567, 578
SfaNI GCATC 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 386
SsiI CCGC 2 cut(s) 288, 313
SspMI CTAG 2 cut(s) 387, 631
TaaI ACNGT 2 cut(s) 139, 457
TaiI ACGT 1 cut(s) 567
TaqI TCGA 1 cut(s) 490
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 4 cut(s) 117, 369, 495, 539
Tru9I TTAA 4 cut(s) 117, 369, 495, 539
TscAI CASTG 2 cut(s) 142, 484
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 354, 603
TspRI CASTG 2 cut(s) 142, 484
VspI ATTAAT 1 cut(s) 369
XspI CTAG 2 cut(s) 387, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.