Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Forward (+)

16615007 .. 16620393

Gene Structure 5387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGACGAGACGATGATGGACGAGGACGTGTGGGTGGACGAGGTGTCAGCGTCCGACTCATTTTCTTTTAATGTGCCCTATCCAGAAAAGATCGACAGGGATGCTTGGAGTACACAGCTGGTTCCGGAATTTGCTAAGCTTGGCTTAGTATGCACATGGTGGAATGAGCATGAAATGGGATGCACAATCGATCCAACAATAGACATTCCACGCTCGGATGTCTTTCTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGGCAAAGTCGACATTGAAAGTACTGTCGGGCGATGAGTGGTTAATCACTAGAGACTTTGAAGACGAGATTAGTCAGGATCCAGTGCGTGAACGGTTCGACAATTTTATTTCCAAATATGAAAAATTCATGAAGGAGGTTGGTCAGCGGTTCCCCTGTGAACTTAAACATAATGAACATTGTATTGCTTTTGTGGCAAATGCACGAATATTTGAAATTATGGCGGTTCTCGTGTGGCAAGTAGTTGTGCACGGTCATTTGGATGTTGAACAAGAGCTCAATAGTTTGTTGGAGTTTTATGAGAGGCCTTCCGGATTTGAACATAATCCATGCACTGATTCGGGGCCTGGACATGATGATATATATGATGGAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

214

Amino Acids

24.72

Weight (kDa)

4.38

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	278
AccIII	TCCGGA	2 cut(s)	124, 578
AciI	CCGC	2 cut(s)	415, 491
AclWI	GGATC	3 cut(s)	185, 341, 354
AcsI	RAATTY	2 cut(s)	128, 392
AdeI	CACNNNGTG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	112, 291
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	286, 329, 482, 536, 587
AhdI	GACNNNNNGTC	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	3 cut(s)	118, 139, 544
AluI	AGCT	3 cut(s)	118, 139, 544
Alw21I	GWGCWC	2 cut(s)	519, 546
Alw26I	GTCTC	2 cut(s)	2, 315
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	3 cut(s)	185, 341, 354
Aor13HI	TCCGGA	2 cut(s)	124, 578
AoxI	GGCC	2 cut(s)	572, 611
ApaLI	GTGCAC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	128, 392
AspS9I	GGNCC	1 cut(s)	611
BaeGI	GKGCMC	2 cut(s)	78, 519
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	235, 546
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	519, 546
BccI	CCATC	2 cut(s)	10, 629
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	2, 315
BfaI	CTAG	2 cut(s)	318, 643
BlpI	GCTNAGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	615
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	5 cut(s)	123, 348, 419, 612, 640
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	3 cut(s)	91, 170, 229
BpiI	GAAGAC	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	124, 578
Bse1I	ACTGG	1 cut(s)	350
BseAI	TCCGGA	2 cut(s)	124, 578
BseBI	CCWGG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	5 cut(s)	106, 185, 223, 244, 535
BseMII	CTCAG	2 cut(s)	218, 248
BseNI	ACTGG	1 cut(s)	350
BseSI	GKGCMC	2 cut(s)	78, 519
BshFI	GGCC	2 cut(s)	574, 613
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	519, 546
BsiSI	CCGG	2 cut(s)	125, 579
BsmAI	GTCTC	2 cut(s)	2, 315
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	574, 613
Bsp1286I	GDGCHC	4 cut(s)	78, 235, 519, 546
Bsp13I	TCCGGA	2 cut(s)	124, 578
Bsp143I	GATC	3 cut(s)	90, 190, 346
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	2 cut(s)	415, 491
BspANI	GGCC	2 cut(s)	574, 613
BspCNI	CTCAG	2 cut(s)	219, 247
BspDI	ATCGAT	1 cut(s)	189
BspEI	TCCGGA	2 cut(s)	124, 578
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	5 cut(s)	123, 348, 419, 612, 640
BspPI	GGATC	3 cut(s)	185, 341, 354
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	90, 190, 346
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	294, 363, 521
BstDEI	CTNAG	4 cut(s)	135, 145, 227, 234
BstF5I	GGATG	5 cut(s)	106, 185, 223, 244, 535
BstKTI	GATC	3 cut(s)	93, 193, 349
BstMAI	GTCTC	2 cut(s)	2, 315
BstMBI	GATC	3 cut(s)	90, 190, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 239, 248, 461
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstSLI	GKGCMC	2 cut(s)	78, 519
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	574, 613
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	315
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	5 cut(s)	106, 185, 223, 244, 535
BtsIMutI	CAGTG	2 cut(s)	357, 600
CciI	TCATGA	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	611
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	111, 290
CviAII	CATG	5 cut(s)	156, 170, 397, 597, 620
CviJI	RGCY	7 cut(s)	118, 139, 144, 233, 544, 574, 613
CviKI_1	RGCY	7 cut(s)	118, 139, 144, 233, 544, 574, 613
CviQI	GTAC	2 cut(s)	111, 290
DdeI	CTNAG	4 cut(s)	135, 145, 227, 234
DpnI	GATC	3 cut(s)	92, 192, 348
DpnII	GATC	3 cut(s)	90, 190, 346
DraIII	CACNNNGTG	1 cut(s)	159
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	235, 546
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	235, 546
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	5 cut(s)	159, 173, 400, 600, 623
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	5 cut(s)	155, 169, 396, 596, 619
FblI	GTMKAC	1 cut(s)	278
FokI	GGATG	5 cut(s)	113, 192, 230, 251, 542
FriOI	GRGCYC	2 cut(s)	235, 546
FspBI	CTAG	2 cut(s)	318, 643
HaeIII	GGCC	2 cut(s)	574, 613
HapII	CCGG	2 cut(s)	125, 579
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	159, 173, 400, 600, 623
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	2 cut(s)	56, 605
HpaII	CCGG	2 cut(s)	125, 579
Hpy166II	GTNNAC	6 cut(s)	37, 113, 279, 359, 428, 517
Hpy188I	TCNGA	3 cut(s)	55, 217, 228
Hpy188III	TCNNGA	6 cut(s)	83, 125, 236, 344, 397, 579
Hpy8I	GTNNAC	6 cut(s)	37, 113, 279, 359, 428, 517
HpyAV	CCTTC	2 cut(s)	394, 585
HpyCH4III	ACNGT	3 cut(s)	294, 363, 521
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	5 cut(s)	153, 183, 470, 517, 600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 239, 248, 461
HpyF3I	CTNAG	4 cut(s)	135, 145, 227, 234
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	159, 173, 400, 600, 623
Kpn2I	TCCGGA	2 cut(s)	124, 578
Kzo9I	GATC	3 cut(s)	90, 190, 346
LweI	GCATC	3 cut(s)	91, 170, 229
MaeI	CTAG	2 cut(s)	318, 643
MaeII	ACGT	1 cut(s)	27
MalI	GATC	3 cut(s)	92, 192, 348
MboI	GATC	3 cut(s)	90, 190, 346
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	4 cut(s)	78, 235, 519, 546
MluCI	AATT	4 cut(s)	128, 370, 392, 483
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	3 cut(s)	78, 218, 537
MnlI	CCTC	5 cut(s)	16, 34, 222, 397, 564
MroI	TCCGGA	2 cut(s)	124, 578
MseI	TTAA	3 cut(s)	69, 311, 432
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	118, 415
MspI	CCGG	2 cut(s)	125, 579
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	4 cut(s)	150, 239, 248, 461
NdeII	GATC	3 cut(s)	90, 190, 346
NlaIII	CATG	5 cut(s)	159, 173, 400, 600, 623
NlaIV	GGNNCC	5 cut(s)	123, 348, 419, 612, 640
NmeAIII	GCCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	605
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	5 cut(s)	123, 348, 419, 612, 640
PspPI	GGNCC	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	112, 291
RsaNI	GTAC	2 cut(s)	111, 290
RseI	CAYNNNNRTG	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	69, 311, 432
Sau3AI	GATC	3 cut(s)	90, 190, 346
Sau96I	GGNCC	1 cut(s)	611
ScaI	AGTACT	1 cut(s)	291
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	4 cut(s)	78, 235, 519, 546
SetI	ASST	7 cut(s)	30, 45, 120, 141, 408, 546, 644
SfaNI	GCATC	3 cut(s)	91, 170, 229
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	4 cut(s)	128, 370, 392, 483
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	2 cut(s)	415, 491
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	2 cut(s)	318, 643
SstI	GAGCTC	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	294, 363, 521
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	93, 189, 278, 366
TasI	AATT	4 cut(s)	128, 370, 392, 483
TatI	WGTACW	2 cut(s)	110, 289
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	3 cut(s)	69, 311, 432
Tru9I	TTAA	3 cut(s)	69, 311, 432
TscAI	CASTG	2 cut(s)	357, 607
TspDTI	ATGAA	6 cut(s)	186, 244, 385, 402, 413, 456
TspRI	CASTG	2 cut(s)	357, 607
VneI	GTGCAC	1 cut(s)	515
XapI	RAATTY	2 cut(s)	128, 392
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	2 cut(s)	318, 643
ZrmI	AGTACT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.