Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Forward (+)

24432245 .. 24434565

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1177300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGACCTTTAGACGAGACTGAGACCACGACAGTGTTTGAAAAGCTGTTCAAGTTTACAGGCAACAACCTCAAGAACATTGTCGAGAATCCGTCTCATGAAGGCCCAGACCCGGGTCCAGGTCGTTACTGCTTTCGCCTCCACAAGAACAAAGTTTACTATGTTAGCGAATCACTAGTAAAGCGTGCTACAAATATAGCTCGGACCCAGTTAGTCTCTCTTGGCACCTGTATTGGTAGGTTCACTCATGGTGGTAAGTTCCATTTAACCGTTCAGTGTCTGAGCTTATTGGCATCAAATGCTAAACACAAGGTCTGGCTCAAACCTACCTCCGAGATGTCGTTCTTGTATGGAAACCATGTTTTGAAAGGTGGTTTGGGGAGGATTACAGAGAATATTGTGCCGGGTGATGGGGTGGTTGTATTTTCAATGTCAGATGTGCCTTTGGGTTTTGGGATTGCTGCCAAGTCTACTCAAGATTGTAGGAAGTTGGACCCCAATGGAATTGTGGTGCTTCACCAGACTGATATTGGAGAGTACTTGAGGATGGAGGATGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

188

Amino Acids

20.76

Weight (kDa)

8.66

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
pre-PUA_NIP7	PF17833	1 - 91	1.2e-22	NIP7/UPF0113, pre-PUA domain
UPF0113	PF03657	104 - 182	2.3e-21	UPF0113 PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	470
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	4 cut(s)	112, 113, 119, 410
AgsI	TTSAA	4 cut(s)	41, 52, 367, 429
AhlI	ACTAGT	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	4 cut(s)	46, 200, 285, 559
AluI	AGCT	4 cut(s)	46, 200, 285, 559
Alw26I	GTCTC	4 cut(s)	11, 17, 99, 220
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	461
AspS9I	GGNCC	4 cut(s)	104, 116, 204, 493
AsuC2I	CCSGG	3 cut(s)	113, 114, 405
AsuHPI	GGTGA	2 cut(s)	419, 509
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	3 cut(s)	116, 204, 493
BanI	GGYRCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	404, 541
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	3 cut(s)	113, 114, 405
BcoDI	GTCTC	4 cut(s)	11, 17, 99, 220
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	4 cut(s)	113, 114, 120, 405
Bme18I	GGWCC	3 cut(s)	116, 204, 493
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	104, 116, 204, 493
BmiI	GGNNCC	4 cut(s)	117, 206, 226, 495
BmrFI	CCNGG	4 cut(s)	113, 114, 120, 405
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	114
BpuEI	CTTGAG	3 cut(s)	56, 459, 562
BpuMI	CCSGG	3 cut(s)	113, 114, 405
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 113, 119, 410
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	552, 559
BseLI	CCNNNNNNNGG	4 cut(s)	112, 113, 119, 410
BseMII	CTCAG	2 cut(s)	12, 272
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	113, 404
BslI	CCNNNNNNNGG	4 cut(s)	112, 113, 119, 410
BsmAI	GTCTC	4 cut(s)	11, 17, 99, 220
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	112
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	13, 273
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	117, 206, 226, 495
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	34, 271
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	21, 281
BstF5I	GGATG	2 cut(s)	552, 559
BstMAI	GTCTC	4 cut(s)	11, 17, 99, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSCI	CCNGG	4 cut(s)	111, 112, 118, 403
BstV1I	GCAGC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	552, 559
BtsIMutI	CAGTG	2 cut(s)	39, 281
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	4 cut(s)	104, 116, 204, 493
Cfr9I	CCCGGG	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	98, 248, 359
CviJI	RGCY	6 cut(s)	46, 105, 200, 285, 319, 559
CviKI_1	RGCY	6 cut(s)	46, 105, 200, 285, 319, 559
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	2 cut(s)	21, 281
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	3 cut(s)	116, 204, 493
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	3 cut(s)	101, 251, 362
FaiI	YATR	6 cut(s)	99, 162, 197, 249, 351, 360
FatI	CATG	3 cut(s)	97, 247, 358
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	113, 404
Hin1II	CATG	3 cut(s)	101, 251, 362
HinfI	GANTC	2 cut(s)	88, 170
HpaII	CCGG	2 cut(s)	113, 404
HphI	GGTGA	2 cut(s)	419, 509
Hpy166II	GTNNAC	4 cut(s)	57, 157, 243, 471
Hpy188I	TCNGA	4 cut(s)	204, 282, 334, 436
Hpy188III	TCNNGA	4 cut(s)	73, 85, 98, 476
Hpy8I	GTNNAC	4 cut(s)	57, 157, 243, 471
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	34, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	21, 281
Hsp92II	CATG	3 cut(s)	101, 251, 362
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	125
MluCI	AATT	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	6 cut(s)	80, 149, 340, 375, 537, 544
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	2 cut(s)	113, 404
MspR9I	CCNGG	4 cut(s)	113, 114, 120, 405
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	3 cut(s)	113, 114, 405
NlaIII	CATG	3 cut(s)	101, 251, 362
NlaIV	GGNNCC	4 cut(s)	117, 206, 226, 495
OliI	CACNNNNGTG	1 cut(s)	32
PagI	TCATGA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	88, 170
PkrI	GCNGC	1 cut(s)	463
PshAI	GACNNNNGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	4 cut(s)	117, 206, 226, 495
PspPI	GGNCC	4 cut(s)	104, 116, 204, 493
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PstNI	CAGNNNCTG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	1 cut(s)	462
Sau96I	GGNCC	4 cut(s)	104, 116, 204, 493
ScaI	AGTACT	1 cut(s)	539
ScrFI	CCNGG	4 cut(s)	113, 114, 120, 405
SfaNI	GCATC	1 cut(s)	302
SinI	GGWCC	3 cut(s)	116, 204, 493
SmaI	CCCGGG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	71, 474, 541
SmoI	CTYRAG	3 cut(s)	71, 474, 541
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	1 cut(s)	504
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	4 cut(s)	111, 112, 118, 403
TaaI	ACNGT	2 cut(s)	34, 271
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	504
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	88, 170
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	2 cut(s)	39, 281
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	81
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	2 cut(s)	39, 281
VpaK11BI	GGWCC	3 cut(s)	116, 204, 493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	505, 527
XmaI	CCCGGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.