Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Forward (+)

8977895 .. 8978944

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCGTCCTTTAGACGAGACCGAGACAACCGTCGTCTTCGAGAAGCTCTTCAAATTCGTCGGCAACAACCTCAAGAAGATCGTCGAGAACCCATCAGACGAAGGACCCGAATCTACACCCGGCAGCTACTGCTTCCGCCTCCAGAAAAACAGAGTCTACTACGTCAGCGAAGCCCTCGTGAAGCGAGCCACAAACATCTCCAGGAAAAACCTAGTCTCCTTCGGAACCTGCATCGGGAAATACACTCACGCCGGTAGTTTCCATCTGACGATTATGTCACTCAATATCTTGGCGGCGAATGCTAAACACAAGGTATGGCTTAAACCCACTTCGGAGATGTCGTTTCTTTATGGGAACCATGTCTTGAAAGGTGGATTAGGGAGGATTACTGATAGTATTGTTCCTGGAGATGGTGTTGTTGTGTTCTCGATGTCTGATGTTCCGTTAGGGTTTGGGATTGCTGCGAAGAGTACACAGGATTGTAGGAAATTGGATCCTAATGGTATTGTTGTGCTTCATCAGGCTGATATTGGAGAGTATTTGAGGGGTGAAGATGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

187

Amino Acids

20.61

Weight (kDa)

8.38

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
pre-PUA_NIP7	PF17833	1 - 91	8e-22	NIP7/UPF0113, pre-PUA domain
UPF0113	PF03657	104 - 182	4e-21	UPF0113 PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
Acc36I	ACCTGC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	2 cut(s)	136, 293
AclWI	GGATC	2 cut(s)	488, 501
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	234, 410
AgsI	TTSAA	2 cut(s)	52, 367
AjnI	CCWGG	2 cut(s)	200, 403
AluBI	AGCT	2 cut(s)	46, 126
AluI	AGCT	2 cut(s)	46, 126
Alw26I	GTCTC	3 cut(s)	11, 17, 220
AlwI	GGATC	2 cut(s)	488, 501
AlwNI	CAGNNNCTG	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	123, 461
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	493
BauI	CACGAG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	135, 448
BccI	CCATC	3 cut(s)	100, 270, 404
BciT130I	CCWGG	2 cut(s)	202, 405
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	11, 17, 220
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	124, 294, 462
BlsI	GCNGC	3 cut(s)	125, 295, 463
Bme1390I	CCNGG	3 cut(s)	120, 202, 405
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	4 cut(s)	106, 226, 356, 495
BmrFI	CCNGG	3 cut(s)	120, 202, 405
BmsI	GCATC	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	3 cut(s)	125, 184, 426
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	6 cut(s)	200, 230, 326, 356, 399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 410
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	202, 405
BseLI	CCNNNNNNNGG	2 cut(s)	234, 410
BseXI	GCAGC	2 cut(s)	135, 448
BsiSI	CCGG	2 cut(s)	120, 252
BslI	CCNNNNNNNGG	2 cut(s)	234, 410
BsmAI	GTCTC	3 cut(s)	11, 17, 220
BsmI	GAATGC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	78, 493
BspACI	CCGC	2 cut(s)	136, 293
BspLI	GGNNCC	4 cut(s)	106, 226, 356, 495
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	488, 501
BspQI	GCTCTTC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	2 cut(s)	78, 493
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	202, 405
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	53, 461
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	81, 496
BstMAI	GTCTC	3 cut(s)	11, 17, 220
BstMBI	GATC	2 cut(s)	78, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 299
BstNI	CCWGG	2 cut(s)	202, 405
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	118, 200, 403
BstV1I	GCAGC	2 cut(s)	135, 448
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	6 cut(s)	46, 126, 173, 188, 319, 524
CviKI_1	RGCY	6 cut(s)	46, 126, 173, 188, 319, 524
CviQI	GTAC	1 cut(s)	471
DpnI	GATC	2 cut(s)	80, 495
DpnII	GATC	2 cut(s)	78, 493
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	53, 461
EarI	CTCTTC	2 cut(s)	53, 461
EciI	GGCGGA	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	200, 403
FaeI	CATG	1 cut(s)	362
FaiI	YATR	4 cut(s)	275, 316, 351, 360
FalI	AAGNNNNNCTT	1 cut(s)	543
FatI	CATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	124, 294, 462
Fsp4HI	GCNGC	3 cut(s)	124, 294, 462
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	3 cut(s)	124, 294, 462
GsuI	CTGGAG	3 cut(s)	125, 184, 426
HapII	CCGG	2 cut(s)	120, 252
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	2 cut(s)	110, 153
HpaII	CCGG	2 cut(s)	120, 252
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	157, 473
Hpy188I	TCNGA	5 cut(s)	97, 224, 267, 334, 436
Hpy188III	TCNNGA	8 cut(s)	40, 73, 85, 142, 178, 235, 364, 427
Hpy8I	GTNNAC	2 cut(s)	157, 473
Hpy99I	CGWCG	3 cut(s)	35, 62, 86
HpyAV	CCTTC	2 cut(s)	95, 229
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 299
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	78, 493
LguI	GCTCTTC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	135, 448
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	2 cut(s)	80, 495
MboI	GATC	2 cut(s)	78, 493
MboII	GAAGA	5 cut(s)	28, 40, 88, 478, 563
MflI	RGATCY	1 cut(s)	493
MluCI	AATT	2 cut(s)	53, 488
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	80, 149, 185, 375, 537
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	321
MspI	CCGG	2 cut(s)	120, 252
MspR9I	CCNGG	3 cut(s)	120, 202, 405
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	202, 405
MwoI	GCNNNNNNNGC	2 cut(s)	129, 299
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	78, 493
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	4 cut(s)	106, 226, 356, 495
NmuCI	GTSAC	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 338
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	110
PfoI	TCCNGGA	2 cut(s)	200, 403
PkrI	GCNGC	3 cut(s)	125, 295, 463
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	200, 403
PspGI	CCWGG	2 cut(s)	200, 403
PspN4I	GGNNCC	4 cut(s)	106, 226, 356, 495
PspPI	GGNCC	1 cut(s)	104
PspPPI	RGGWCCY	1 cut(s)	104
PstNI	CAGNNNCTG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	124, 294, 462
Sau3AI	GATC	2 cut(s)	78, 493
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	120, 202, 405
SetI	ASST	9 cut(s)	48, 72, 128, 165, 213, 230, 315, 373, 561
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	53, 488
SsiI	CCGC	2 cut(s)	136, 293
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	118, 200, 403
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	39, 84, 428
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	53, 488
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	2 cut(s)	123, 461
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.