Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Forward (+)

26576949 .. 26579288

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1218500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATGGTGCTGTGTCTAGGAATTATCAGCAGTACAGAACCTTAGGAGACTTAACACGGACAAAGATGAGACCTTTAGACGAGACTGAGACCACGACGGTGTTTGAAAAGCTGTTCAAGTTTACAGGCAACAACCTCAAAAACATTGTTGAGAACCCTTCTCATGAAGGCCCAGACCCTGGTTCAGGTCGTTACTGTTTTCGCCTCCACAAGAACAAAGTTTACTATGTTAGCGAGTCACTAGTAAAGCGTGCTACAAATATAGCTCGGACTCAGTTAGTCTCCCTTGGCACCTGTATCGGTAGGTTCACTCATGGTGGCAAGTTCCATTTAACTGTTCAATGTCTGAGTTTATTGGCATCAAATGCTAAACACAAGGTCTGGCTCAAACCTACCTCCGAGATGTCATTCTTGTACGGAAACCATGTTTTGAAAGGTGGTTTGGGGAGGATTACAGAGAATATTGTGCCGGGTGATGGGGTGGTTGTGTTTTCAATGTCAGATGTGCCTTTGGGTTTCGGGATTGCTGCCAAGTCTACTCAAGATTGTAGGAAGTTGGACCCCAATGGAATTGTGGTGCTTCACCAGACTGATATTGGAGAGTACTTGAGGATGGAGGATGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

9.16

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
pre-PUA_NIP7	PF17833	23 - 113	1.6e-22	NIP7/UPF0113, pre-PUA domain
UPF0113	PF03657	126 - 204	2.9e-21	UPF0113 PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	536
AfaI	GTAC	3 cut(s)	35, 416, 605
AfiI	CCNNNNNNNGG	3 cut(s)	179, 185, 476
AgsI	TTSAA	5 cut(s)	107, 118, 341, 433, 495
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	112, 266, 625
AluI	AGCT	3 cut(s)	112, 266, 625
Alw26I	GTCTC	5 cut(s)	42, 64, 77, 83, 286
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	170, 559
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	485, 575
AvaII	GGWCC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	470, 607
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	5 cut(s)	42, 64, 77, 83, 286
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	2 cut(s)	18, 242
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	2 cut(s)	180, 471
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	170, 559
BmiI	GGNNCC	2 cut(s)	292, 561
BmrFI	CCNGG	2 cut(s)	180, 471
BmsI	GCATC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	525, 628
BpuMI	CCSGG	1 cut(s)	471
BsaI	GGTCTC	2 cut(s)	64, 83
BsaJI	CCNNGG	2 cut(s)	178, 286
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 185, 476
Bse21I	CCTNAGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	178, 286
BseGI	GGATG	2 cut(s)	618, 625
BseLI	CCNNNNNNNGG	3 cut(s)	179, 185, 476
BseMII	CTCAG	3 cut(s)	78, 287, 338
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	179, 185, 476
BsmAI	GTCTC	5 cut(s)	42, 64, 77, 83, 286
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	2 cut(s)	64, 83
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	79, 286, 339
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	292, 561
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	2 cut(s)	64, 83
BssECI	CCNNGG	2 cut(s)	178, 286
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	100, 197, 337
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	4 cut(s)	43, 87, 273, 347
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	618, 625
BstMAI	GTCTC	5 cut(s)	42, 64, 77, 83, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	178, 469
BstV1I	GCAGC	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	618, 625
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	170, 559
Csp6I	GTAC	3 cut(s)	34, 415, 604
CviAII	CATG	3 cut(s)	164, 314, 425
CviJI	RGCY	5 cut(s)	112, 171, 266, 385, 625
CviKI_1	RGCY	5 cut(s)	112, 171, 266, 385, 625
CviQI	GTAC	3 cut(s)	34, 415, 604
DdeI	CTNAG	4 cut(s)	43, 87, 273, 347
Eco130I	CCWWGG	1 cut(s)	286
Eco31I	GGTCTC	2 cut(s)	64, 83
Eco47I	GGWCC	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	167, 317, 428
FaiI	YATR	5 cut(s)	165, 228, 263, 315, 426
FatI	CATG	3 cut(s)	163, 313, 424
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	625
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	2 cut(s)	18, 242
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	3 cut(s)	167, 317, 428
HinfI	GANTC	2 cut(s)	236, 271
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	485, 575
Hpy166II	GTNNAC	4 cut(s)	123, 223, 309, 537
Hpy188I	TCNGA	4 cut(s)	270, 348, 400, 502
Hpy188III	TCNNGA	3 cut(s)	164, 520, 542
Hpy8I	GTNNAC	4 cut(s)	123, 223, 309, 537
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	161, 168
HpyCH4III	ACNGT	3 cut(s)	100, 197, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	4 cut(s)	43, 87, 273, 347
Hsp92II	CATG	3 cut(s)	167, 317, 428
LpnPI	CCDG	9 cut(s)	111, 165, 171, 186, 192, 307, 367, 483, 599
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	2 cut(s)	18, 242
MaeIII	GTNAC	2 cut(s)	191, 237
MluCI	AATT	2 cut(s)	22, 570
MlyI	GAGTC	2 cut(s)	245, 265
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	6 cut(s)	146, 215, 406, 441, 603, 610
MseI	TTAA	2 cut(s)	53, 332
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	180, 471
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	471
NlaIII	CATG	3 cut(s)	167, 317, 428
NlaIV	GGNNCC	2 cut(s)	292, 561
NmuCI	GTSAC	1 cut(s)	237
OliI	CACNNNNGTG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	244, 265
PpsI	GAGTC	2 cut(s)	244, 265
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	292, 561
PspPI	GGNCC	2 cut(s)	170, 559
PsrI	GAACNNNNNNTAC	2 cut(s)	206, 238
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	35, 416, 605
RsaNI	GTAC	3 cut(s)	34, 415, 604
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	53, 332
SatI	GCNGC	1 cut(s)	528
Sau96I	GGNCC	2 cut(s)	170, 559
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	2 cut(s)	245, 265
ScrFI	CCNGG	2 cut(s)	180, 471
SfaNI	GCATC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	540, 607
SmoI	CTYRAG	2 cut(s)	540, 607
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	2 cut(s)	22, 570
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	18, 242
StyD4I	CCNGG	2 cut(s)	178, 469
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	100, 197, 337
TasI	AATT	2 cut(s)	22, 570
TatI	WGTACW	2 cut(s)	33, 603
Tru1I	TTAA	2 cut(s)	53, 332
Tru9I	TTAA	2 cut(s)	53, 332
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	17, 180
TspGWI	ACGGA	2 cut(s)	73, 432
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	559
XagI	CCTNNNNNAGG	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	2 cut(s)	571, 593
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	2 cut(s)	18, 242
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.