60S ribosome subunit biogenesis protein NIP7 homolog
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 15 - 62 | 3.4e-18 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 18 - 76 | 1.3e-14 | Myb-like DNA-binding domain |
| Myb_DNA-binding | PF00249 | 68 - 113 | 1.5e-16 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 72 - 120 | 1.8e-08 | Myb-like DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 125 |
| AccB1I | GGYRCC | 1 cut(s) | 101 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 111 |
| AccI | GTMKAC | 1 cut(s) | 286 |
| AclWI | GGATC | 2 cut(s) | 15, 28 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcuI | CTGAAG | 1 cut(s) | 573 |
| AfaI | GTAC | 3 cut(s) | 86, 403, 412 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 111 |
| AgsI | TTSAA | 3 cut(s) | 92, 142, 178 |
| AhlI | ACTAGT | 1 cut(s) | 398 |
| AjnI | CCWGG | 2 cut(s) | 50, 292 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 359, 391 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 37 |
| AluBI | AGCT | 3 cut(s) | 253, 371, 595 |
| AluI | AGCT | 3 cut(s) | 253, 371, 595 |
| Alw21I | GWGCWC | 1 cut(s) | 463 |
| Alw26I | GTCTC | 3 cut(s) | 181, 389, 443 |
| AlwI | GGATC | 2 cut(s) | 15, 28 |
| AoxI | GGCC | 1 cut(s) | 295 |
| ApeKI | GCWGC | 2 cut(s) | 614, 617 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 505, 533 |
| AspLEI | GCGC | 1 cut(s) | 391 |
| AsuHPI | GGTGA | 1 cut(s) | 589 |
| BaeGI | GKGCMC | 1 cut(s) | 683 |
| BamHI | GGATCC | 1 cut(s) | 20 |
| BanI | GGYRCC | 1 cut(s) | 101 |
| BbsI | GAAGAC | 3 cut(s) | 122, 236, 609 |
| Bbv12I | GWGCWC | 1 cut(s) | 463 |
| BbvI | GCAGC | 2 cut(s) | 601, 604 |
| BccI | CCATC | 2 cut(s) | 165, 506 |
| BciT130I | CCWGG | 2 cut(s) | 52, 294 |
| BcoDI | GTCTC | 3 cut(s) | 181, 389, 443 |
| BcuI | ACTAGT | 1 cut(s) | 398 |
| BfaI | CTAG | 1 cut(s) | 399 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BfuAI | ACCTGC | 1 cut(s) | 125 |
| BisI | GCNGC | 2 cut(s) | 615, 618 |
| BlsI | GCNGC | 2 cut(s) | 616, 619 |
| BmcAI | AGTACT | 1 cut(s) | 412 |
| Bme1390I | CCNGG | 2 cut(s) | 52, 294 |
| BmiI | GGNNCC | 4 cut(s) | 6, 22, 49, 103 |
| BmrFI | CCNGG | 2 cut(s) | 52, 294 |
| BpiI | GAAGAC | 3 cut(s) | 122, 236, 609 |
| BpmI | CTGGAG | 1 cut(s) | 447 |
| BpuEI | CTTGAG | 1 cut(s) | 611 |
| Bsa29I | ATCGAT | 1 cut(s) | 145 |
| BsaI | GGTCTC | 2 cut(s) | 181, 443 |
| BsaJI | CCNNGG | 4 cut(s) | 97, 292, 609, 648 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 409, 412, 439, 442 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 111 |
| Bse118I | RCCGGY | 1 cut(s) | 281 |
| Bse1I | ACTGG | 1 cut(s) | 329 |
| Bse3DI | GCAATG | 1 cut(s) | 648 |
| BseBI | CCWGG | 2 cut(s) | 52, 294 |
| BseCI | ATCGAT | 1 cut(s) | 145 |
| BseDI | CCNNGG | 4 cut(s) | 97, 292, 609, 648 |
| BseGI | GGATG | 1 cut(s) | 517 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 111 |
| BseMI | GCAATG | 1 cut(s) | 648 |
| BseMII | CTCAG | 2 cut(s) | 158, 176 |
| BseNI | ACTGG | 1 cut(s) | 329 |
| BseRI | GAGGAG | 1 cut(s) | 417 |
| BseSI | GKGCMC | 1 cut(s) | 683 |
| BseXI | GCAGC | 2 cut(s) | 601, 604 |
| BshFI | GGCC | 1 cut(s) | 297 |
| BshNI | GGYRCC | 1 cut(s) | 101 |
| BshVI | ATCGAT | 1 cut(s) | 145 |
| BsiHKAI | GWGCWC | 1 cut(s) | 463 |
| BsiSI | CCGG | 1 cut(s) | 282 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 111 |
| BsmAI | GTCTC | 3 cut(s) | 181, 389, 443 |
| BsmI | GAATGC | 1 cut(s) | 442 |
| BsnI | GGCC | 1 cut(s) | 297 |
| Bso31I | GGTCTC | 2 cut(s) | 181, 443 |
| Bsp1286I | GDGCHC | 2 cut(s) | 463, 683 |
| Bsp143I | GATC | 1 cut(s) | 20 |
| Bsp19I | CCATGG | 2 cut(s) | 97, 609 |
| BspANI | GGCC | 1 cut(s) | 297 |
| BspCNI | CTCAG | 2 cut(s) | 159, 177 |
| BspDI | ATCGAT | 1 cut(s) | 145 |
| BspLI | GGNNCC | 4 cut(s) | 6, 22, 49, 103 |
| BspMAI | CTGCAG | 1 cut(s) | 61 |
| BspMI | ACCTGC | 1 cut(s) | 125 |
| BspPI | GGATC | 2 cut(s) | 15, 28 |
| BspT107I | GGYRCC | 1 cut(s) | 101 |
| BspTNI | GGTCTC | 2 cut(s) | 181, 443 |
| BsrDI | GCAATG | 1 cut(s) | 648 |
| BsrFI | RCCGGY | 1 cut(s) | 281 |
| BsrI | ACTGG | 1 cut(s) | 329 |
| BssAI | RCCGGY | 1 cut(s) | 281 |
| BssECI | CCNNGG | 4 cut(s) | 97, 292, 609, 648 |
| BssMI | GATC | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 3 cut(s) | 97, 609, 648 |
| Bst2UI | CCWGG | 2 cut(s) | 52, 294 |
| Bst4CI | ACNGT | 1 cut(s) | 121 |
| Bst6I | CTCTTC | 1 cut(s) | 219 |
| BstDEI | CTNAG | 3 cut(s) | 167, 185, 675 |
| BstDSI | CCRYGG | 2 cut(s) | 97, 609 |
| BstF5I | GGATG | 1 cut(s) | 517 |
| BstHHI | GCGC | 1 cut(s) | 391 |
| BstKTI | GATC | 1 cut(s) | 23 |
| BstMAI | GTCTC | 3 cut(s) | 181, 389, 443 |
| BstMBI | GATC | 1 cut(s) | 20 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 131, 377, 386 |
| BstNI | CCWGG | 2 cut(s) | 52, 294 |
| BstSCI | CCNGG | 2 cut(s) | 50, 292 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstSLI | GKGCMC | 1 cut(s) | 683 |
| BstV1I | GCAGC | 2 cut(s) | 601, 604 |
| BstV2I | GAAGAC | 3 cut(s) | 122, 236, 609 |
| BstX2I | RGATCY | 1 cut(s) | 20 |
| BstYI | RGATCY | 1 cut(s) | 20 |
| Bsu15I | ATCGAT | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 297 |
| BsuTUI | ATCGAT | 1 cut(s) | 145 |
| BtgI | CCRYGG | 2 cut(s) | 97, 609 |
| BtsCI | GGATG | 1 cut(s) | 517 |
| BtsIMutI | CAGTG | 1 cut(s) | 549 |
| BveI | ACCTGC | 1 cut(s) | 125 |
| CfoI | GCGC | 1 cut(s) | 391 |
| Cfr10I | RCCGGY | 1 cut(s) | 281 |
| ClaI | ATCGAT | 1 cut(s) | 145 |
| Csp6I | GTAC | 3 cut(s) | 85, 402, 411 |
| CviAII | CATG | 2 cut(s) | 98, 610 |
| CviQI | GTAC | 3 cut(s) | 85, 402, 411 |
| DdeI | CTNAG | 3 cut(s) | 167, 185, 675 |
| DpnI | GATC | 1 cut(s) | 22 |
| DpnII | GATC | 1 cut(s) | 20 |
| Eam1104I | CTCTTC | 1 cut(s) | 219 |
| EarI | CTCTTC | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 3 cut(s) | 97, 609, 648 |
| Eco31I | GGTCTC | 2 cut(s) | 181, 443 |
| Eco57I | CTGAAG | 1 cut(s) | 573 |
| EcoRI | GAATTC | 1 cut(s) | 328 |
| EcoRII | CCWGG | 2 cut(s) | 50, 292 |
| EcoT14I | CCWWGG | 3 cut(s) | 97, 609, 648 |
| EcoT22I | ATGCAT | 1 cut(s) | 442 |
| ErhI | CCWWGG | 3 cut(s) | 97, 609, 648 |
| FaeI | CATG | 2 cut(s) | 101, 613 |
| FaiI | YATR | 8 cut(s) | 38, 99, 131, 212, 249, 564, 611, 685 |
| FatI | CATG | 2 cut(s) | 97, 609 |
| FblI | GTMKAC | 1 cut(s) | 286 |
| Fnu4HI | GCNGC | 2 cut(s) | 615, 618 |
| FokI | GGATG | 1 cut(s) | 524 |
| Fsp4HI | GCNGC | 2 cut(s) | 615, 618 |
| FspBI | CTAG | 1 cut(s) | 399 |
| GlaI | GCGC | 1 cut(s) | 390 |
| GluI | GCNGC | 2 cut(s) | 615, 618 |
| GsuI | CTGGAG | 1 cut(s) | 447 |
| HaeIII | GGCC | 1 cut(s) | 297 |
| HapII | CCGG | 1 cut(s) | 282 |
| HhaI | GCGC | 1 cut(s) | 391 |
| Hin1II | CATG | 2 cut(s) | 101, 613 |
| Hin6I | GCGC | 1 cut(s) | 389 |
| HinP1I | GCGC | 1 cut(s) | 389 |
| HincII | GTYRAC | 1 cut(s) | 665 |
| HindII | GTYRAC | 1 cut(s) | 665 |
| HinfI | GANTC | 3 cut(s) | 142, 288, 661 |
| HpaII | CCGG | 1 cut(s) | 282 |
| HphI | GGTGA | 1 cut(s) | 589 |
| Hpy166II | GTNNAC | 4 cut(s) | 287, 529, 580, 665 |
| Hpy188I | TCNGA | 3 cut(s) | 217, 260, 511 |
| Hpy188III | TCNNGA | 2 cut(s) | 199, 590 |
| Hpy8I | GTNNAC | 4 cut(s) | 287, 529, 580, 665 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 1 cut(s) | 548 |
| HpyCH4III | ACNGT | 1 cut(s) | 121 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 80, 162, 440 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 131, 377, 386 |
| HpyF3I | CTNAG | 3 cut(s) | 167, 185, 675 |
| Hsp92II | CATG | 2 cut(s) | 101, 613 |
| HspAI | GCGC | 1 cut(s) | 389 |
| Kzo9I | GATC | 1 cut(s) | 20 |
| LmnI | GCTCC | 3 cut(s) | 10, 47, 466 |
| Lsp1109I | GCAGC | 2 cut(s) | 601, 604 |
| MaeI | CTAG | 1 cut(s) | 399 |
| MaeIII | GTNAC | 1 cut(s) | 515 |
| MalI | GATC | 1 cut(s) | 22 |
| MboI | GATC | 1 cut(s) | 20 |
| MboII | GAAGA | 9 cut(s) | 74, 77, 127, 236, 236, 370, 491, 494, 614 |
| MflI | RGATCY | 1 cut(s) | 20 |
| MhlI | GDGCHC | 2 cut(s) | 463, 683 |
| MluCI | AATT | 1 cut(s) | 328 |
| MlyI | GAGTC | 2 cut(s) | 282, 670 |
| MmeI | TCCRAC | 1 cut(s) | 549 |
| MnlI | CCTC | 4 cut(s) | 102, 197, 220, 438 |
| Mph1103I | ATGCAT | 1 cut(s) | 442 |
| MroXI | GAANNNNTTC | 2 cut(s) | 505, 533 |
| MseI | TTAA | 1 cut(s) | 443 |
| MspI | CCGG | 1 cut(s) | 282 |
| MspR9I | CCNGG | 2 cut(s) | 52, 294 |
| Mva1269I | GAATGC | 1 cut(s) | 442 |
| MvaI | CCWGG | 2 cut(s) | 52, 294 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 131, 377, 386 |
| NcoI | CCATGG | 2 cut(s) | 97, 609 |
| NdeII | GATC | 1 cut(s) | 20 |
| NlaIII | CATG | 2 cut(s) | 101, 613 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 22, 49, 103 |
| NsiI | ATGCAT | 1 cut(s) | 442 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 528 |
| PctI | GAATGC | 1 cut(s) | 442 |
| PdmI | GAANNNNTTC | 2 cut(s) | 505, 533 |
| PfeI | GAWTC | 1 cut(s) | 142 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 111 |
| PkrI | GCNGC | 2 cut(s) | 616, 619 |
| PleI | GAGTC | 2 cut(s) | 282, 669 |
| PpsI | GAGTC | 2 cut(s) | 282, 669 |
| Psp6I | CCWGG | 2 cut(s) | 50, 292 |
| PspGI | CCWGG | 2 cut(s) | 50, 292 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 22, 49, 103 |
| PstI | CTGCAG | 1 cut(s) | 61 |
| PsuI | RGATCY | 1 cut(s) | 20 |
| RsaI | GTAC | 3 cut(s) | 86, 403, 412 |
| RsaNI | GTAC | 3 cut(s) | 85, 402, 411 |
| SaqAI | TTAA | 1 cut(s) | 443 |
| SatI | GCNGC | 2 cut(s) | 615, 618 |
| Sau3AI | GATC | 1 cut(s) | 20 |
| ScaI | AGTACT | 1 cut(s) | 412 |
| SchI | GAGTC | 2 cut(s) | 282, 670 |
| ScrFI | CCNGG | 2 cut(s) | 52, 294 |
| SduI | GDGCHC | 2 cut(s) | 463, 683 |
| SetI | ASST | 8 cut(s) | 36, 113, 139, 186, 255, 269, 373, 597 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 590 |
| SmoI | CTYRAG | 1 cut(s) | 590 |
| SpeI | ACTAGT | 1 cut(s) | 398 |
| Sse9I | AATT | 1 cut(s) | 328 |
| SspMI | CTAG | 1 cut(s) | 399 |
| StyD4I | CCNGG | 2 cut(s) | 50, 292 |
| StyI | CCWWGG | 3 cut(s) | 97, 609, 648 |
| TaaI | ACNGT | 1 cut(s) | 121 |
| TaqI | TCGA | 3 cut(s) | 145, 383, 522 |
| TaqII | GACCGA | 1 cut(s) | 205 |
| TasI | AATT | 1 cut(s) | 328 |
| TatI | WGTACW | 2 cut(s) | 84, 410 |
| TfiI | GAWTC | 1 cut(s) | 142 |
| Tru1I | TTAA | 1 cut(s) | 443 |
| Tru9I | TTAA | 1 cut(s) | 443 |
| TscAI | CASTG | 1 cut(s) | 556 |
| TseI | GCWGC | 2 cut(s) | 614, 617 |
| TspDTI | ATGAA | 5 cut(s) | 53, 236, 237, 324, 615 |
| TspGWI | ACGGA | 1 cut(s) | 33 |
| TspRI | CASTG | 1 cut(s) | 556 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 111 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XmiI | GTMKAC | 1 cut(s) | 286 |
| XmnI | GAANNNNTTC | 2 cut(s) | 505, 533 |
| XspI | CTAG | 1 cut(s) | 399 |
| ZrmI | AGTACT | 1 cut(s) | 412 |
| Zsp2I | ATGCAT | 1 cut(s) | 442 |