Rorug03G0205900

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000085
Physical Location & Seq
Reverse (-)
18241549 .. 18244842
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0205900.1

Sequence Viewer

Length: 1008 bp
ATGCAAAGTCCAGCAGAGAAAAAACCAGGCGTCTACACCTACGTGAGTCAATGGCCAATCTACTCCTTGGCTTGGTCAGTTCGCCAAGACAAGCCTTCACGCCTCGCCATAGGAAGCTTCATCGAAGAGTACAGCAACAAGGTCGAACTCGTCCAATTCAACCCGTCCACCTCCGACTTCACCACTGATAATCGCCTCATTTTCGACCACCCATATGCCCCCACAAACGTCATGTTCTTCCCTTCCGGGGCGGCCACCAATCCAGACCTCATAGCCACCTCCGGTGACTACTTACGCATTTGGGAGATCCATGACGACCGAATTGAGCTCAGGTCCCTGCTCAATGGGAACATGAGCAGCGAGTTCAACTCGGCCATAACATCATTTGATTGGGCCGAGTTTGACACTCGACGTGTGGCAACATCAAGTGTCGACACAACCTGTACGATTTGGGACATTGAAAGGGAGGCCGTGGACACCCAACTGGTAGCTCATGACAAAGAAGTAAATGACATTTCTTGGGGTGGATTCAATGTATTTGCTTCTGCTTCTGGGGATGGCACTGTTCGGATATTTGACCTAAGAGACAAAGAGAGGTCGACCATAGTATACGAGAACCCTGCTCAAGATGGGTCATTGTTGAGGCTAGAATGGAACAAACAAGACCCAAGGTTCATAGCCACGGTTGGAATGGATAGCAACAGGGTGGTGATATTGGACATTAGGTTTCCCACAGCACCATTGATGGAGCTCAAAAAGCATGGAGCTAGTGTGAATGCCATTTCTTGGTCGCCACGCATGGGGCACCAGCTATGTTCTGTGAGTGATGATTCAAGGGCTATGATATGGGAGGTGGTGAGATCCGGATTTGGATCCGATGGGGCGGACATGGAGCCGGAGATGTGGTATGGAGTGACGGCTCAGATTAATCAAGTGCGGTGGTCACCTGTGGAGTTGGATTGGGTTGCCATTGCTTTCTTGAACAAGTTGCAGCTATTGAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

335

Amino Acids

37.9

Weight (kDa)

4.78

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_EIPR1 PF23609 34 - 283 2.4e-09 EIPR1 beta-propeller
Beta-prop_WDR3_1st PF25173 104 - 205 7.5e-10 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 118 - 287 7.3e-12 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 120 - 316 4e-21 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 123 - 202 7e-10 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 125 - 265 2.4e-16 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 125 - 199 3.1e-11 WDR5 beta-propeller domain
WD40_Gbeta PF25391 134 - 203 2.2e-07 G protein beta WD-40 repeat protein
Beta-prop_RIG_2nd PF23775 161 - 286 5.3e-06 RIG second beta-propeller
Beta-prop_THOC3 PF25174 215 - 285 2.8e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 804
AccB7I CCANNNNNTGG 1 cut(s) 786
AccI GTMKAC 4 cut(s) 33, 432, 599, 609
AccIII TCCGGA 1 cut(s) 863
AciI CCGC 3 cut(s) 251, 884, 937
AclWI GGATC 4 cut(s) 301, 855, 867, 880
AcoI YGGCCR 3 cut(s) 53, 252, 372
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 131, 445
AfiI CCNNNNNNNGG 4 cut(s) 72, 247, 786, 800
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 7 cut(s) 160, 367, 461, 532, 834, 982, 1000
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 1 cut(s) 25
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 7 cut(s) 117, 328, 491, 751, 767, 811, 994
AluI AGCT 7 cut(s) 117, 328, 491, 751, 767, 811, 994
Alw21I GWGCWC 2 cut(s) 330, 753
Alw26I GTCTC 1 cut(s) 579
AlwI GGATC 4 cut(s) 301, 855, 867, 880
Aor13HI TCCGGA 1 cut(s) 863
AoxI GGCC 5 cut(s) 53, 252, 372, 393, 468
ApeKI GCWGC 2 cut(s) 357, 991
AseI ATTAAT 1 cut(s) 927
AspS9I GGNCC 2 cut(s) 333, 393
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 5 cut(s) 172, 296, 721, 868, 936
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 807
BalI TGGCCA 1 cut(s) 55
BamHI GGATCC 1 cut(s) 872
BanI GGYRCC 1 cut(s) 804
BanII GRGCYC 2 cut(s) 330, 753
Bbv12I GWGCWC 2 cut(s) 330, 753
BbvI GCAGC 2 cut(s) 369, 1003
BccI CCATC 4 cut(s) 551, 623, 739, 872
BceAI ACGGC 2 cut(s) 455, 933
BcgI CGANNNNNNTGC 4 cut(s) 124, 158, 602, 636
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 2 cut(s) 647, 768
BisI GCNGC 3 cut(s) 252, 358, 992
BlsI GCNGC 3 cut(s) 253, 359, 993
Bme1390I CCNGG 2 cut(s) 27, 247
Bme18I GGWCC 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 333, 393
BmiI GGNNCC 4 cut(s) 335, 806, 874, 894
BmrFI CCNGG 2 cut(s) 27, 247
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 871
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 5 cut(s) 66, 246, 471, 668, 681
BsaWI WCCGGW 2 cut(s) 281, 863
BsaXI ACNNNNNCTCC 4 cut(s) 756, 786, 890, 920
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 247, 786, 800
Bse1I ACTGG 1 cut(s) 489
Bse3DI GCAATG 1 cut(s) 969
Bse8I GATNNNNATC 1 cut(s) 871
BseAI TCCGGA 1 cut(s) 863
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 5 cut(s) 66, 246, 471, 668, 681
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 871
BseLI CCNNNNNNNGG 4 cut(s) 72, 247, 786, 800
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 2 cut(s) 343, 935
BseNI ACTGG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 807
BseXI GCAGC 2 cut(s) 369, 1003
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 5 cut(s) 55, 254, 374, 395, 470
BshNI GGYRCC 1 cut(s) 804
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 330, 753
BsiSI CCGG 4 cut(s) 246, 282, 864, 896
BslFI GGGAC 2 cut(s) 319, 467
BslI CCNNNNNNNGG 4 cut(s) 72, 247, 786, 800
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 319, 467
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 5 cut(s) 55, 254, 374, 395, 470
Bsp1286I GDGCHC 3 cut(s) 330, 753, 807
Bsp13I TCCGGA 1 cut(s) 863
Bsp143I GATC 3 cut(s) 306, 860, 872
BspACI CCGC 3 cut(s) 251, 884, 937
BspANI GGCC 5 cut(s) 55, 254, 374, 395, 470
BspCNI CTCAG 2 cut(s) 342, 934
BspEI TCCGGA 1 cut(s) 863
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 4 cut(s) 335, 806, 874, 894
BspPI GGATC 4 cut(s) 301, 855, 867, 880
BspT107I GGYRCC 1 cut(s) 804
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 5 cut(s) 66, 246, 471, 668, 681
BssMI GATC 3 cut(s) 306, 860, 872
BssNAI GTATAC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 66, 668
Bst1107I GTATAC 1 cut(s) 610
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 565, 685
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 329, 581, 921
BstDSI CCRYGG 2 cut(s) 471, 681
BstEII GGTNACC 1 cut(s) 942
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 3 cut(s) 309, 863, 875
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 3 cut(s) 306, 860, 872
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstNI CCWGG 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 942
BstSCI CCNGG 2 cut(s) 25, 245
BstSLI GKGCMC 1 cut(s) 807
BstV1I GCAGC 2 cut(s) 369, 1003
BstX2I RGATCY 3 cut(s) 306, 860, 872
BstYI RGATCY 3 cut(s) 306, 860, 872
BstZ17I GTATAC 1 cut(s) 610
BsuRI GGCC 5 cut(s) 55, 254, 374, 395, 470
BtgI CCRYGG 2 cut(s) 471, 681
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 2 cut(s) 183, 561
CciI TCATGA 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 333, 393
CseI GACGC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 130, 444
CspCI CAANNNNNGTGG 2 cut(s) 920, 955
CviAII CATG 7 cut(s) 232, 311, 352, 494, 761, 799, 889
CviQI GTAC 2 cut(s) 130, 444
DdeI CTNAG 3 cut(s) 329, 581, 921
DpnI GATC 3 cut(s) 308, 862, 874
DpnII GATC 3 cut(s) 306, 860, 872
EaeI YGGCCR 3 cut(s) 53, 252, 372
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 899
Ecl136II GAGCTC 2 cut(s) 328, 751
Eco130I CCWWGG 2 cut(s) 66, 668
Eco24I GRGCYC 2 cut(s) 330, 753
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 2 cut(s) 328, 751
Eco91I GGTNACC 1 cut(s) 942
EcoICRI GAGCTC 2 cut(s) 328, 751
EcoO109I RGGNCCY 1 cut(s) 333
EcoO65I GGTNACC 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 66, 668
EcoT38I GRGCYC 2 cut(s) 330, 753
ErhI CCWWGG 2 cut(s) 66, 668
FaeI CATG 7 cut(s) 235, 314, 355, 497, 764, 802, 892
FaqI GGGAC 2 cut(s) 319, 467
FatI CATG 7 cut(s) 231, 310, 351, 493, 760, 798, 888
FauNDI CATATG 1 cut(s) 214
FblI GTMKAC 4 cut(s) 33, 432, 599, 609
Fnu4HI GCNGC 3 cut(s) 252, 358, 992
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 2 cut(s) 330, 753
Fsp4HI GCNGC 3 cut(s) 252, 358, 992
FspBI CTAG 2 cut(s) 647, 768
GluI GCNGC 3 cut(s) 252, 358, 992
HaeIII GGCC 5 cut(s) 55, 254, 374, 395, 470
HapII CCGG 4 cut(s) 246, 282, 864, 896
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 7 cut(s) 235, 314, 355, 497, 764, 802, 892
HincII GTYRAC 2 cut(s) 433, 600
HindII GTYRAC 2 cut(s) 433, 600
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 3 cut(s) 46, 528, 830
HpaII CCGG 4 cut(s) 246, 282, 864, 896
HphI GGTGA 5 cut(s) 172, 296, 721, 868, 936
Hpy166II GTNNAC 6 cut(s) 34, 168, 433, 475, 600, 610
Hpy188I TCNGA 4 cut(s) 175, 570, 877, 924
Hpy188III TCNNGA 5 cut(s) 263, 494, 626, 864, 979
Hpy8I GTNNAC 6 cut(s) 34, 168, 433, 475, 600, 610
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 105, 252, 994
HpyCH4III ACNGT 2 cut(s) 565, 685
HpyCH4IV ACGT 3 cut(s) 42, 228, 412
HpyCH4V TGCA 2 cut(s) 4, 991
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
HpyF3I CTNAG 3 cut(s) 329, 581, 921
HpySE526I ACGT 3 cut(s) 42, 228, 412
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 7 cut(s) 235, 314, 355, 497, 764, 802, 892
Kpn2I TCCGGA 1 cut(s) 863
Kzo9I GATC 3 cut(s) 306, 860, 872
LmnI GCTCC 3 cut(s) 748, 764, 892
Lsp1109I GCAGC 2 cut(s) 369, 1003
MaeI CTAG 2 cut(s) 647, 768
MaeII ACGT 3 cut(s) 42, 228, 412
MaeIII GTNAC 3 cut(s) 284, 913, 942
MalI GATC 3 cut(s) 308, 862, 874
MboI GATC 3 cut(s) 306, 860, 872
MboII GAAGA 2 cut(s) 137, 229
MflI RGATCY 3 cut(s) 306, 860, 872
MhlI GDGCHC 3 cut(s) 330, 753, 807
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 2 cut(s) 155, 321
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 3 cut(s) 198, 667, 936
MnlI CCTC 9 cut(s) 113, 181, 206, 278, 289, 460, 588, 636, 844
Mox20I TGGCCA 1 cut(s) 55
MroI TCCGGA 1 cut(s) 863
MscI TGGCCA 1 cut(s) 55
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 2 cut(s) 41, 213
Msp20I TGGCCA 1 cut(s) 55
MspI CCGG 4 cut(s) 246, 282, 864, 896
MspR9I CCNGG 2 cut(s) 27, 247
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 757
NciI CCSGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 306, 860, 872
NlaIII CATG 7 cut(s) 235, 314, 355, 497, 764, 802, 892
NlaIV GGNNCC 4 cut(s) 335, 806, 874, 894
NmeAIII GCCGAG 2 cut(s) 350, 421
NmuCI GTSAC 3 cut(s) 284, 913, 942
OliI CACNNNNGTG 1 cut(s) 41
PagI TCATGA 1 cut(s) 493
PctI GAATGC 1 cut(s) 781
PfeI GAWTC 2 cut(s) 528, 830
PflMI CCANNNNNTGG 1 cut(s) 786
PkrI GCNGC 3 cut(s) 253, 359, 993
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 927
Psp124BI GAGCTC 2 cut(s) 330, 753
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 942
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 4 cut(s) 335, 806, 874, 894
PspPI GGNCC 2 cut(s) 333, 393
PspPPI RGGWCCY 1 cut(s) 333
PsuI RGATCY 3 cut(s) 306, 860, 872
RsaI GTAC 2 cut(s) 131, 445
RsaNI GTAC 2 cut(s) 130, 444
RseI CAYNNNNRTG 2 cut(s) 41, 213
SacI GAGCTC 2 cut(s) 330, 753
SalI GTCGAC 2 cut(s) 431, 598
SaqAI TTAA 1 cut(s) 927
SatI GCNGC 3 cut(s) 252, 358, 992
Sau3AI GATC 3 cut(s) 306, 860, 872
Sau96I GGNCC 2 cut(s) 333, 393
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 27, 247
SduI GDGCHC 3 cut(s) 330, 753, 807
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 41, 213
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 2 cut(s) 155, 321
SsiI CCGC 3 cut(s) 251, 884, 937
SspMI CTAG 2 cut(s) 647, 768
SstI GAGCTC 2 cut(s) 330, 753
StyD4I CCNGG 2 cut(s) 25, 245
StyI CCWWGG 2 cut(s) 66, 668
TaaI ACNGT 2 cut(s) 565, 685
TaiI ACGT 3 cut(s) 45, 231, 415
TaqI TCGA 6 cut(s) 123, 144, 204, 409, 432, 599
TaqII GACCGA 1 cut(s) 333
TasI AATT 2 cut(s) 155, 321
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 528, 830
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 2 cut(s) 190, 568
TseFI GTSAC 3 cut(s) 284, 913, 942
TseI GCWGC 2 cut(s) 357, 991
Tsp45I GTSAC 3 cut(s) 284, 913, 942
TspDTI ATGAA 2 cut(s) 109, 664
TspRI CASTG 2 cut(s) 190, 568
Van91I CCANNNNNTGG 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 333
VspI ATTAAT 1 cut(s) 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmiI GTMKAC 4 cut(s) 33, 432, 599, 609
XspI CTAG 2 cut(s) 647, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.