Rorug05G0466400

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000085
Physical Location & Seq
Reverse (-)
64201288 .. 64204025
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0466400.1

Sequence Viewer

Length: 1707 bp
ATGTCACCAACGAACGAAGCTCTTGTCCTCATCCAAAAAATGGTGAAAAGCCCCCCACTCAAAGCCTTGTCAATCTTCAACTCCTCAACTCTCCAAGGCTTCAACCACACCCACCACTCCATCTCCTTCATTCTTCACAACCTCATCTCCTCCAATATGCCAATGCACGCCCAGTCTCTCATTCTTCAACTCCTCTCCGGTCGAATCTCATCCCCATTCTTCACTCCCTCGTCTCTCCTCCACGATTTAACTCAACCCAAGTTGAGCTCAGTCCCCACCTCTGGTCATCTATACGAAGCAATCATCAACGCCCACGTTCAGTCTCAGTTGCCAGAGCAAGCCCTTTACTATTTGAACAAAATGGTTGAGCAAGGCCTCGTTCCCAGATCAAACACTTTCAATAACGTATTGGGTTTTCTTGTTAAGTCGAGATATTTTGAGAAGGCTTGGTGGGTGTTCAATGAGTTTAAAGGCAAGGTGGGATTGGATTTGTATAGTTTTGGGATAGTTATAAAAAGTTGCTGCGAGGGTAGTGAATTGGATAGGGGTTTTGGGGTTTTGGATGAGATGGAGGAAATGGGTTGGTCTCCCAATGTGGTTATATACACTACATTGATTGATGGGTGTTGCAAGAATGGTGATTTAGAGAGGGCAAAGAAGATGTTTTGCAAAATGGGGGAGCTTGGTTTGGTTGCTAATCAGTTTACATATACTGTGTTGATTGATGGGCTTTTCAAGAAAGGTCGGAATAAAGAAGGGTTTGAGTTGTATGAGAAGATGAAGATTAATGGGGTTGTTCCTAACATGCGTACTTATACTTGTTTGATCAGTGGGTGTAGCAACGATGGAAAAATGAATAGTGCCTTGAACTTGTTCGATGAAATGCGTGAGAGAGGAATGGCCTGCAATGTGGTCACATACAACATCCTAATTGGTGGGTTGTGTCGAGAAATGAGGGCTTGGGAAGCAGAGAAGTTTGTGAATGAGATGAAGAGGGATGGTATTAGTCCGAGTATAGTTACTTTCAACACACTGATTGATGGGTTTTGTGGTCTTGGAAAGTTGGACAAGGCGTTGAGTTTGTTTGATCAGTTGAAGTCGAGTGGACAATCTCCGTCTCTGGTGACTTATAATGTTCTGATTCAAGGCTTTGCCAAAGCTCGAAACTCTGCTGGAGTTATTGATTTGGTGAGAGAGATGGAGAACAGAGGCATGTCTCCTTCTAAAGTGACGTATACAATTGTAATTGATGCCTTGGTTCGATCTGATGACATGGAAAGAGCATTTCATGTGTTCTCCTCCATGGAGAAGGCTGGTCTGGTGCCTGATGTCTACACCTATGGGGTCTTAATACATGGATTATGCATGAAAGGTAATATGATTGAAGCATCAAAGCTGTTACAATCAATGAGCGATTCACATTTGGAGCCAAGTGATGTCATATTTAATATAATGATTCATGGCTACTGCAAAGAGGGTAGCTCTTACAGGGCACTGAGGTTGCTCAAAGAAATGAGAAAGAAAGGAATGGTTCCGAATGTGGCTAGTTACAGTTCGACCATTGGAGTTCTTTGTAATGATGGGAAATGGGAAGAAGCTGAAATACTACTTAAAGAAATGACGGACTCAGATTCGAAACCATCAGTTTCTTTGTATAATATAATTTCTAGAGTGAAAAATGATACACCGGTGAAGTTATCAACCTAA

Protein Analysis

568

Amino Acids

63.35

Weight (kDa)

7.86

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 160 - 283 1.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 186 - 242 5.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 194 - 225 2.7e-12 PPR repeat
PPR_2 PF13041 197 - 246 5.9e-17 PPR repeat family
PPR PF01535 200 - 230 2.3e-09 PPR repeat
PPR_long PF17177 205 - 317 9e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 229 - 261 1.1e-07 PPR repeat
PPR_2 PF13041 233 - 281 2.7e-15 PPR repeat family
PPR PF01535 235 - 265 2.9e-06 PPR repeat
PPR_long PF17177 253 - 382 4.1e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 256 - 312 7.8e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 263 - 296 1.6e-09 PPR repeat
PPR_2 PF13041 271 - 316 2.6e-17 PPR repeat family
PPR PF01535 271 - 299 3.1e-08 PPR repeat
PPR_1 PF12854 298 - 331 2.3e-11 PPR repeat
PPR_2 PF13041 303 - 350 7.2e-17 PPR repeat family
PPR PF01535 305 - 335 2.2e-07 PPR repeat
PPR_3 PF13812 327 - 384 1.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 333 - 365 2.1e-11 PPR repeat
PPR_2 PF13041 337 - 386 4.7e-17 PPR repeat family
PPR PF01535 340 - 369 5.1e-08 PPR repeat
PPR_long PF17177 358 - 479 1.8e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 372 - 421 1.6e-13 PPR repeat family
PPR_3 PF13812 396 - 452 1.1e-09 Pentatricopeptide repeat domain
PPR PF01535 410 - 440 1e-05 PPR repeat
PPR_2 PF13041 410 - 455 2e-15 PPR repeat family
PPR_3 PF13812 438 - 489 6.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 439 - 470 1.2e-09 PPR repeat
PPR_3 PF13812 465 - 524 5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 475 - 506 1.9e-08 PPR repeat
PPR_2 PF13041 477 - 526 4.2e-14 PPR repeat family
PPR PF01535 480 - 509 3.4e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 512, 1131
AccB1I GGYRCC 1 cut(s) 1321
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 2 cut(s) 1235, 1332
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 2 cut(s) 40, 281
AgeI ACCGGT 1 cut(s) 1687
AluBI AGCT 7 cut(s) 20, 267, 682, 1160, 1396, 1482, 1598
AluI AGCT 7 cut(s) 20, 267, 682, 1160, 1396, 1482, 1598
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 6 cut(s) 180, 237, 327, 591, 1122, 1221
AoxI GGCC 2 cut(s) 373, 900
ApeKI GCWGC 1 cut(s) 522
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AseI ATTAAT 1 cut(s) 786
AsiGI ACCGGT 1 cut(s) 1687
Asp700I GAANNNNTTC 1 cut(s) 872
AsuHPI GGTGA 5 cut(s) 55, 650, 1135, 1201, 1702
AsuII TTCGAA 1 cut(s) 1634
BaeGI GKGCMC 1 cut(s) 1495
BaeI ACNNNNGTAYC 2 cut(s) 1674, 1707
BanI GGYRCC 1 cut(s) 1321
BanII GRGCYC 1 cut(s) 269
BarI GAAGNNNNNNTAC 2 cut(s) 1587, 1619
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 509
BclI TGATCA 2 cut(s) 825, 1087
BcoDI GTCTC 6 cut(s) 180, 237, 327, 591, 1122, 1221
BfaI CTAG 2 cut(s) 1545, 1668
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
BmiI GGNNCC 3 cut(s) 1323, 1428, 1533
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 1240, 1397
BmuI ACTGGG 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 1466, 1498
BpmI CTGGAG 1 cut(s) 1194
Bpu14I TTCGAA 1 cut(s) 1634
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 94, 1254, 1302
BsaWI WCCGGW 2 cut(s) 197, 1687
BsaXI ACNNNNNCTCC 4 cut(s) 107, 131, 137, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 281
Bse118I RCCGGY 1 cut(s) 1687
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 913
BseDI CCNNGG 3 cut(s) 94, 1254, 1302
BseGI GGATG 5 cut(s) 30, 209, 568, 924, 1003
BseLI CCNNNNNNNGG 2 cut(s) 40, 281
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 4 cut(s) 282, 338, 1487, 1641
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 5 cut(s) 73, 139, 182, 227, 1288
BseSI GKGCMC 1 cut(s) 1495
BseXI GCAGC 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 375, 902
BshNI GGYRCC 1 cut(s) 1321
BshTI ACCGGT 1 cut(s) 1687
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 2 cut(s) 198, 1688
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 40, 281
BsmAI GTCTC 6 cut(s) 180, 237, 327, 591, 1122, 1221
BsmBI CGTCTC 2 cut(s) 237, 1122
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 2 cut(s) 375, 902
Bso31I GGTCTC 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 1634
Bsp1286I GDGCHC 2 cut(s) 269, 1495
Bsp143I GATC 4 cut(s) 386, 825, 1087, 1262
Bsp19I CCATGG 1 cut(s) 1302
BspANI GGCC 2 cut(s) 375, 902
BspCNI CTCAG 4 cut(s) 281, 337, 1488, 1640
BspLI GGNNCC 3 cut(s) 1323, 1428, 1533
BspT104I TTCGAA 1 cut(s) 1634
BspT107I GGYRCC 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 1687
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 1687
BssECI CCNNGG 3 cut(s) 94, 1254, 1302
BssMI GATC 4 cut(s) 386, 825, 1087, 1262
BssNAI GTATAC 1 cut(s) 1236
BssT1I CCWWGG 3 cut(s) 94, 1254, 1302
Bst1107I GTATAC 1 cut(s) 1236
Bst4CI ACNGT 2 cut(s) 715, 1553
Bst6I CTCTTC 1 cut(s) 986
BstBI TTCGAA 1 cut(s) 1634
BstC8I GCNNGC 3 cut(s) 168, 339, 904
BstDEI CTNAG 4 cut(s) 268, 324, 1496, 1627
BstDSI CCRYGG 1 cut(s) 1302
BstF5I GGATG 5 cut(s) 30, 209, 568, 924, 1003
BstKTI GATC 4 cut(s) 389, 828, 1090, 1265
BstMAI GTCTC 6 cut(s) 180, 237, 327, 591, 1122, 1221
BstMBI GATC 4 cut(s) 386, 825, 1087, 1262
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 965
BstNSI RCATGY 2 cut(s) 808, 1216
BstSLI GKGCMC 1 cut(s) 1495
BstV1I GCAGC 1 cut(s) 509
BstZ17I GTATAC 1 cut(s) 1236
BsuRI GGCC 2 cut(s) 375, 902
BtgI CCRYGG 1 cut(s) 1302
BtsCI GGATG 5 cut(s) 30, 209, 568, 924, 1003
BtsIMutI CAGTG 3 cut(s) 835, 1031, 1493
Cac8I GCNNGC 3 cut(s) 168, 339, 904
Cfr10I RCCGGY 1 cut(s) 1687
Csp6I GTAC 1 cut(s) 810
CspAI ACCGGT 1 cut(s) 1687
CviAII CATG 8 cut(s) 805, 1213, 1273, 1289, 1303, 1355, 1366, 1460
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 4 cut(s) 268, 324, 1496, 1627
DpnI GATC 4 cut(s) 388, 827, 1089, 1264
DpnII GATC 4 cut(s) 386, 825, 1087, 1262
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 986
EarI CTCTTC 1 cut(s) 986
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 3 cut(s) 94, 1254, 1302
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 267
EcoT14I CCWWGG 3 cut(s) 94, 1254, 1302
EcoT22I ATGCAT 1 cut(s) 1367
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 3 cut(s) 94, 1254, 1302
Esp3I CGTCTC 2 cut(s) 237, 1122
FaeI CATG 8 cut(s) 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
FaqI GGGAC 1 cut(s) 257
FatI CATG 8 cut(s) 804, 1212, 1272, 1288, 1302, 1354, 1365, 1459
FbaI TGATCA 2 cut(s) 825, 1087
FblI GTMKAC 2 cut(s) 1235, 1332
Fnu4HI GCNGC 1 cut(s) 523
FokI GGATG 5 cut(s) 17, 196, 575, 911, 1010
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 2 cut(s) 1545, 1668
GluI GCNGC 1 cut(s) 523
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 2 cut(s) 375, 902
HapII CCGG 2 cut(s) 198, 1688
Hin1II CATG 8 cut(s) 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
HinfI GANTC 6 cut(s) 204, 1141, 1415, 1456, 1625, 1631
HpaII CCGG 2 cut(s) 198, 1688
HphI GGTGA 5 cut(s) 55, 650, 1135, 1201, 1702
Hpy166II GTNNAC 4 cut(s) 705, 1106, 1236, 1333
Hpy188I TCNGA 6 cut(s) 747, 1011, 1140, 1267, 1536, 1630
Hpy188III TCNNGA 4 cut(s) 429, 736, 947, 1668
Hpy8I GTNNAC 4 cut(s) 705, 1106, 1236, 1333
HpyAV CCTTC 5 cut(s) 136, 436, 749, 1230, 1303
HpyCH4III ACNGT 2 cut(s) 715, 1553
HpyCH4IV ACGT 3 cut(s) 315, 405, 1232
HpyCH4V TGCA 6 cut(s) 166, 630, 669, 906, 1365, 1470
HpyF10VI GCNNNNNNNGC 1 cut(s) 965
HpyF3I CTNAG 4 cut(s) 268, 324, 1496, 1627
HpySE526I ACGT 3 cut(s) 315, 405, 1232
Hsp92II CATG 8 cut(s) 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
Ksp22I TGATCA 2 cut(s) 825, 1087
Kzo9I GATC 4 cut(s) 386, 825, 1087, 1262
LmnI GCTCC 2 cut(s) 679, 1426
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 2 cut(s) 1240, 1397
MaeI CTAG 2 cut(s) 1545, 1668
MaeII ACGT 3 cut(s) 315, 405, 1232
MaeIII GTNAC 7 cut(s) 3, 913, 1018, 1123, 1228, 1398, 1547
MalI GATC 4 cut(s) 388, 827, 1089, 1264
MboI GATC 4 cut(s) 386, 825, 1087, 1262
MboII GAAGA 9 cut(s) 67, 125, 176, 211, 670, 787, 793, 1003, 1604
MfeI CAATTG 1 cut(s) 1239
MhlI GDGCHC 2 cut(s) 269, 1495
MluCI AATT 5 cut(s) 536, 930, 1239, 1245, 1662
MlyI GAGTC 1 cut(s) 1619
MmeI TCCRAC 2 cut(s) 725, 1044
Mph1103I ATGCAT 1 cut(s) 1367
MroXI GAANNNNTTC 1 cut(s) 872
MseI TTAA 7 cut(s) 248, 423, 468, 786, 1349, 1446, 1611
MspI CCGG 2 cut(s) 198, 1688
MunI CAATTG 1 cut(s) 1239
MwoI GCNNNNNNNGC 1 cut(s) 965
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 4 cut(s) 386, 825, 1087, 1262
NlaIII CATG 8 cut(s) 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
NlaIV GGNNCC 3 cut(s) 1323, 1428, 1533
NmuCI GTSAC 4 cut(s) 3, 913, 1123, 1228
NsiI ATGCAT 1 cut(s) 1367
NspI RCATGY 2 cut(s) 808, 1216
NspV TTCGAA 1 cut(s) 1634
PceI AGGCCT 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 872
PfeI GAWTC 5 cut(s) 204, 1141, 1415, 1456, 1631
PflMI CCANNNNNTGG 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 1687
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 1619
PpsI GAGTC 1 cut(s) 1619
PshBI ATTAAT 1 cut(s) 786
PsiI TTATAA 2 cut(s) 512, 1131
Psp124BI GAGCTC 1 cut(s) 269
PspN4I GGNNCC 3 cut(s) 1323, 1428, 1533
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 7 cut(s) 248, 423, 468, 786, 1349, 1446, 1611
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 4 cut(s) 386, 825, 1087, 1262
SchI GAGTC 1 cut(s) 1619
SduI GDGCHC 2 cut(s) 269, 1495
SfaNI GCATC 2 cut(s) 1240, 1397
SfuI TTCGAA 1 cut(s) 1634
SgrAI CRCCGGYG 1 cut(s) 1687
Sse9I AATT 5 cut(s) 536, 930, 1239, 1245, 1662
SseBI AGGCCT 1 cut(s) 375
SspMI CTAG 2 cut(s) 1545, 1668
SstI GAGCTC 1 cut(s) 269
StuI AGGCCT 1 cut(s) 375
StyI CCWWGG 3 cut(s) 94, 1254, 1302
TaaI ACNGT 2 cut(s) 715, 1553
TaiI ACGT 3 cut(s) 318, 408, 1235
TaqI TCGA 9 cut(s) 202, 428, 876, 946, 1100, 1162, 1261, 1556, 1634
TasI AATT 5 cut(s) 536, 930, 1239, 1245, 1662
TfiI GAWTC 5 cut(s) 204, 1141, 1415, 1456, 1631
Tru1I TTAA 7 cut(s) 248, 423, 468, 786, 1349, 1446, 1611
Tru9I TTAA 7 cut(s) 248, 423, 468, 786, 1349, 1446, 1611
TscAI CASTG 3 cut(s) 835, 1038, 1500
TseFI GTSAC 4 cut(s) 3, 913, 1123, 1228
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 4 cut(s) 3, 913, 1123, 1228
TspDTI ATGAA 8 cut(s) 118, 794, 869, 894, 1004, 1277, 1382, 1448
TspGWI ACGGA 2 cut(s) 1104, 1637
TspRI CASTG 3 cut(s) 835, 1038, 1500
Van91I CCANNNNNTGG 1 cut(s) 40
VspI ATTAAT 1 cut(s) 786
XbaI TCTAGA 1 cut(s) 1667
XceI RCATGY 2 cut(s) 808, 1216
XmiI GTMKAC 2 cut(s) 1235, 1332
XmnI GAANNNNTTC 1 cut(s) 872
XspI CTAG 2 cut(s) 1545, 1668
Zsp2I ATGCAT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.