Rw5G039540

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000085
Physical Location & Seq
Forward (+)
69753235 .. 69762152
8918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039540.1

Sequence Viewer

Length: 3156 bp
ATGGTTGGTTCAAAGCATATTCCTTTGCTAAAGTCTGAGATTGATGGTCTGCACCAGGAGCTTATGCATACTAGAAGTGCAATTGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAACAGAGACAGGCAATGGAGAATAACCTAGTTTCTATGGTTTGTGAAGTTGAGAAACTTCGTGCAGAACTTGCTAGAGTTGATGGTAGACCGTGGGGTGCAGGTTTTCTAGAAATGCAGATCTTGTCGCATCAGCGGTTTGGAAGAACATGGTGTGGTGTCACTGGTGTGGTTTCTGCAATCTGCTTAGTTTGCTTCATCATGACTCTGTCTTTCCTTTTTTGTTCTTCTCGTCCTCGATCAAAGCCTTCGAGCAATGCAAGTGCTTCTGCATCTCATCCCTTACCTGTTAGACCAGATCCTCAGCTCTTGAAAGATTCTGAATCAAAGCAACCTAAGGATGATCTAGTACGCTTCCATTTCTTGAAGCAACCCAAGCCATGGATCACCTACACAAGCAGTTCTAAAACAGCCTGGAAGCATGATGTGTTTTTGAGCTTTAGGGGTGAAGACACCCGCCATGGTTTCGTATCTCATTTATACGATGAATTGGAAAGCACCGGAAGAATTAAAACATTCAAGGATGACCAAGGGCTGCAAGCAGGGATGTCAATTTCTCCAAGTCTCCTCAGGGCGATTGAAGAATCAAAGCTGGCAATTGTTGTTTTGTCGCCAAACTACGCTTCTTCTCCATGGTGTTTGGATGAGCTTACACATATATTTCAATTCATGGAAGGCAGAGACAGAATTCTGCCAATTTTTTATCATGTGGATCCAGCTGATGTACGACATCAAAGGGGGAGTTTTGCAACAGCTTTCACTAATTATGAAAGAAAGTCTAGGCAAAGCGAAGAAAAGTTGTATCAGTGGAGAGCTGCCTTAAGACAAGTGGCCAATATCTCTGGGTGGAATACAAAGAACTTTGGGTCCGAGAGTGAGCTTGTCAAACGCATTGCGAAAGATGTTAGCAGTAAAACAACACTTGAAGTTCAACAACGGCCCGTCGAAATTGATATTACCATCCCGTCCACCCGAGAGTTTAGAATATTTGAATCAACAAGACAGGCCATGGATGAGCTGATTAAGGCGCTGATAGATGATGAGGTCACCATCGCTGGGGTTTATGGCATGGGAGGTGTGGGCAAGACAACCATGGTCAGAAATGTTGCTCTACAAGCACGAAAAAATGGGCTCTTTGATCATGTGATTGTGGCTGTCGTATCCCAAGACCCCAACTTTAGAAGGATTCAACAGAAATTGGCAGAGCAGCTCGACTTGAGATTGGAGGGGACGGAATCTGGAACAGCCGATAGATTGAAGGAGAGGATAATGGAAGGAAAGAGGATCCTTATAATCTTGGACGACATTTGGGAAACCATAGACTTGTCACTTATAGGAATTCCCAACCCTGATGAGCTTAAGCGATGCAACTCTAAAGTCCTAATCACCACAAGAAGATTGGATGTTTGCCGCTCCATGAAGAGCCAAGCAAGTTTTCTTCTCAGTATATTATCTAAAGAAGATTCTTGGAAACTTTTTGTGGATTGTTCAAGAATATCTTTTGATGAATCTACCAATATCTATCGAGCGAGGGCGATAGTTAGAGAATGTGGTGGTCTGCCCGTTGCATTGAAAGCAATTGCACGGGCACTTGAAGATAAAGACATGGCTGAATGGAATATAGCAGTTCAACAATTGAGGGCATCTCAAATTGCCAGTCTTGATGATCAGGGTCCTGCGTTCAAATGTATAAAGTTAAGCTATGACTACTTGAGATCTGATGATGCCAAATCATTCTTCTTGCTTTGCTCCCTATTCCCAGAAGACTATGATATCCCTATCAAAGACTTGTTCAAGTATGCTATCGGGAACGGATTGCTTCGAGAAGCCGCCACAATCCAAGAAGCCAGAGATAGAGCAAATTCGGTGATCAAGTACCTCAAAGCTTCCAGCTTACTTTTGGACAGTCCAAAGGAGGGATGCGTAAAGATGCATGATGTTGTTCGGGATACAGCCAAGTCAATTCCAAGGTATGAGGATGATCATGGATTTTGCGTTAAAGCTGGTTGTGGATTAAAGGAGTTTCGAGGGACCACTGGGCATGGAGACTGCTCTGCCATCTCACTAATGATGAATGATATTGATCGGCTTCCTGAAGAGTTGATGATATTGTGGAATCTAGAGAATCTAATAGGCATATGCAATGGTCCTGCTCCAAATGCAGTCTTCCATAGTCTTAAAAACTTGAATAGCATCAATTTAGCTGGCCAGCACACCATGGACATCCTTGAGAGCCTACCTCATAATGTCAGAAAGCGGGTTGAGTTCATGAGAGAAATTGAGAGTCAACGTGATGAATTAGAGGCCAAGCTCTTCAAGGAGAAAGCTGAACTTGAAGCCAAGTATCAGAAATTATATCAGAATCTCTACAGCAAGCGGTACTTGATTGTGAATGGTGTTGTTGAAACTGAAGGAGTTGCCCCTGAAACAACAACAGATCATGAGAACAAAACTGCAAAAGAGAGAGGAGTGCCTGATTTCTGGCTGAATGCATTGAAGAACAATGCATTGCTAGCCGAGGAGATTACCAAGTGTGATGAAGGAGCTCTTAAATATCTTAGAGACATCAAGTGTTTTAAGATACATAACTCGAAGGGGTTCAAGATTGAGTTCGATTTTGACACCAATCCATTTTTCAAAAACTCTGTTTTGACAAAGACATATCACATGATTGATGAAGATGAACCAAACAGCACAGCAGGGACGGAGATTGAATGGTATCCAGCAAAATGCCTGACACAGAAGATTGTTAAGAAGAAGCATAAGAAGGGATCAAAGAATTCTAAGCTTCTGACTAAAACTAAAAATTGTAAAAGTTTCTTCAATTTCTTTAGCCCAAATCAAGTCTCCAAGGACGATGAAGTTATTGATAAAGCTGCTGCCGAGGAACTCAAAAACCAGAAGAAACAAGACTATGATGTTGGGTCAACCATTTGTTATAAGATCATCCCACATGCAGTTTCGTGGTATACTGGAGAAAATATATACAATATATACATCCCACATGGGAAAAATGGGACCTTGCCTAGGGGTTTATAA

Protein Analysis

1051

Amino Acids

119.39

Weight (kDa)

8.03

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 179 - 352 6.5e-52 TIR domain
TIR_2 PF13676 182 - 281 7e-17 TIR domain
NB-ARC PF00931 374 - 533 3.3e-34 NB-ARC domain
NAP PF00956 791 - 1032 1.1e-72 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1409, 3057, 3154
Acc36I ACCTGC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 1530
AccI GTMKAC 2 cut(s) 205, 3086
AciI CCGC 6 cut(s) 253, 574, 1528, 1947, 2374, 2494
AclWI GGATC 7 cut(s) 410, 509, 824, 837, 1396, 1409, 2896
AcoI YGGCCR 2 cut(s) 948, 2323
AcsI RAATTY 4 cut(s) 804, 1455, 1978, 2896
AcuI CTGAAG 2 cut(s) 2232, 2547
AfaI GTAC 4 cut(s) 468, 843, 1994, 2498
AfiI CCNNNNNNNGG 4 cut(s) 498, 1173, 2033, 3144
AflII CTTAAG 2 cut(s) 937, 1475
AjnI CCWGG 2 cut(s) 54, 530
AjuI GAANNNNNNNTTGG 8 cut(s) 724, 756, 1536, 1568, 1838, 1870, 2735, 2767
AleI CACNNNNGTG 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
Alw21I GWGCWC 1 cut(s) 2665
Alw26I GTCTC 6 cut(s) 118, 686, 792, 2157, 2673, 2968
AlwI GGATC 7 cut(s) 410, 509, 824, 837, 1396, 1409, 2896
Ama87I CYCGRG 1 cut(s) 1089
AoxI GGCC 5 cut(s) 948, 1055, 1122, 2323, 2421
ApeKI GCWGC 5 cut(s) 652, 932, 1324, 2993, 2996
ApoI RAATTY 4 cut(s) 804, 1455, 1978, 2896
ArsI GACNNNNNNTTYG 2 cut(s) 1759, 1791
Asp700I GAANNNNTTC 1 cut(s) 2714
AspA2I CCTAGG 1 cut(s) 3143
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 6 cut(s) 984, 1056, 1790, 2148, 2264, 3135
AsuHPI GGTGA 5 cut(s) 496, 575, 1156, 1495, 1996
AsuNHI GCTAGC 1 cut(s) 2629
AvaI CYCGRG 1 cut(s) 1089
AvaII GGWCC 5 cut(s) 984, 1790, 2148, 2264, 3135
AvrII CCTAGG 1 cut(s) 3143
AxyI CCTNAGG 2 cut(s) 453, 686
BaeGI GKGCMC 1 cut(s) 1708
BalI TGGCCA 2 cut(s) 950, 2325
BamHI GGATCC 2 cut(s) 829, 1401
BanII GRGCYC 2 cut(s) 1251, 2665
BbsI GAAGAC 3 cut(s) 573, 1887, 2275
Bbv12I GWGCWC 1 cut(s) 2665
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 5 cut(s) 639, 919, 1336, 2980, 2983
BccI CCATC 5 cut(s) 38, 194, 1085, 1175, 2183
BceAI ACGGC 1 cut(s) 1070
BciT130I CCWGG 2 cut(s) 56, 532
BciVI GTATCC 3 cut(s) 1288, 2059, 2847
BclI TGATCA 4 cut(s) 1255, 1783, 1986, 2098
BcoDI GTCTC 6 cut(s) 118, 686, 792, 2157, 2673, 2968
BfaI CTAG 9 cut(s) 72, 146, 192, 227, 464, 897, 2237, 2630, 3144
BfmI CTRYAG 1 cut(s) 2485
BfoI RGCGCY 1 cut(s) 1148
BfrI CTTAAG 2 cut(s) 937, 1475
BfuAI ACCTGC 1 cut(s) 209
BfuI GTATCC 3 cut(s) 1288, 2059, 2847
BglII AGATCT 2 cut(s) 237, 1832
BisI GCNGC 7 cut(s) 653, 933, 1325, 1528, 1947, 2994, 2997
BlnI CCTAGG 1 cut(s) 3143
BlsI GCNGC 7 cut(s) 654, 934, 1326, 1529, 1948, 2995, 2998
Bme1390I CCNGG 2 cut(s) 56, 532
Bme18I GGWCC 5 cut(s) 984, 1790, 2148, 2264, 3135
BmeT110I CYCGRG 1 cut(s) 1089
BmgT120I GGNCC 6 cut(s) 984, 1056, 1790, 2148, 2264, 3135
BmiI GGNNCC 6 cut(s) 831, 985, 1403, 1791, 2149, 3136
BmrFI CCNGG 2 cut(s) 56, 532
BmrI ACTGGG 1 cut(s) 2163
BmsI GCATC 8 cut(s) 256, 398, 1472, 1769, 1831, 2027, 2037, 2319
BmtI GCTAGC 1 cut(s) 2633
BmuI ACTGGG 1 cut(s) 2163
BpiI GAAGAC 3 cut(s) 573, 1887, 2275
BplI GAGNNNNNCTC 4 cut(s) 1747, 1779, 2341, 2373
BpmI CTGGAG 1 cut(s) 3111
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 3 cut(s) 1354, 1849, 2366
BsaBI GATNNNNATC 1 cut(s) 2199
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 4 cut(s) 498, 1173, 2033, 3144
Bse1I ACTGG 4 cut(s) 286, 1773, 2158, 3094
Bse21I CCTNAGG 2 cut(s) 453, 686
Bse3DI GCAATG 5 cut(s) 138, 379, 1008, 2266, 2624
Bse8I GATNNNNATC 1 cut(s) 2199
BseBI CCWGG 2 cut(s) 56, 532
BseJI GATNNNNATC 1 cut(s) 2199
BseLI CCNNNNNNNGG 4 cut(s) 498, 1173, 2033, 3144
BseMI GCAATG 5 cut(s) 138, 379, 1008, 2266, 2624
BseMII CTCAG 4 cut(s) 27, 434, 700, 1573
BseNI ACTGG 4 cut(s) 286, 1773, 2158, 3094
BseRI GAGGAG 3 cut(s) 674, 2598, 2651
BseSI GKGCMC 1 cut(s) 1708
BseXI GCAGC 5 cut(s) 639, 919, 1336, 2980, 2983
BseYI CCCAGC 1 cut(s) 1172
BsgI GTGCAG 3 cut(s) 35, 201, 237
BshFI GGCC 5 cut(s) 950, 1057, 1124, 2325, 2423
BsiHKAI GWGCWC 1 cut(s) 2665
BsiHKCI CYCGRG 1 cut(s) 1089
BsiSI CCGG 1 cut(s) 618
BslFI GGGAC 4 cut(s) 1360, 2161, 2833, 3148
BslI CCNNNNNNNGG 4 cut(s) 498, 1173, 2033, 3144
BsmAI GTCTC 6 cut(s) 118, 686, 792, 2157, 2673, 2968
BsmFI GGGAC 4 cut(s) 1360, 2161, 2833, 3148
BsmI GAATGC 1 cut(s) 2611
BsnI GGCC 5 cut(s) 950, 1057, 1124, 2325, 2423
BsoBI CYCGRG 1 cut(s) 1089
Bsp1286I GDGCHC 3 cut(s) 1251, 1708, 2665
Bsp19I CCATGG 6 cut(s) 497, 577, 749, 1125, 1209, 2334
BspACI CCGC 6 cut(s) 253, 574, 1528, 1947, 2374, 2494
BspANI GGCC 5 cut(s) 950, 1057, 1124, 2325, 2423
BspCNI CTCAG 4 cut(s) 28, 433, 699, 1572
BspHI TCATGA 3 cut(s) 318, 2385, 2557
BspLI GGNNCC 6 cut(s) 831, 985, 1403, 1791, 2149, 3136
BspMI ACCTGC 1 cut(s) 209
BspOI GCTAGC 1 cut(s) 2633
BspPI GGATC 7 cut(s) 410, 509, 824, 837, 1396, 1409, 2896
BspQI GCTCTTC 2 cut(s) 1532, 2435
BspTI CTTAAG 2 cut(s) 937, 1475
BsrBI CCGCTC 1 cut(s) 1530
BsrDI GCAATG 5 cut(s) 138, 379, 1008, 2266, 2624
BsrI ACTGG 4 cut(s) 286, 1773, 2158, 3094
BssNAI GTATAC 1 cut(s) 3087
Bst1107I GTATAC 1 cut(s) 3087
Bst2UI CCWGG 2 cut(s) 56, 532
Bst4CI ACNGT 2 cut(s) 210, 2024
Bst6I CTCTTC 3 cut(s) 1532, 2208, 2435
BstAFI CTTAAG 2 cut(s) 937, 1475
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 6 cut(s) 657, 711, 2323, 2327, 2492, 2631
BstDEI CTNAG 8 cut(s) 36, 304, 420, 453, 686, 1559, 2675, 2901
BstDSI CCRYGG 7 cut(s) 209, 497, 577, 749, 1125, 1209, 2334
BstEII GGTNACC 1 cut(s) 1162
BstENI CCTNNNNNAGG 1 cut(s) 3142
BstH2I RGCGCY 1 cut(s) 1148
BstHHI GCGC 1 cut(s) 1147
BstMAI GTCTC 6 cut(s) 118, 686, 792, 2157, 2673, 2968
BstMWI GCNNNNNNNGC 8 cut(s) 58, 188, 309, 493, 1232, 1691, 2276, 2630
BstNI CCWGG 2 cut(s) 56, 532
BstNSI RCATGY 1 cut(s) 3074
BstPI GGTNACC 1 cut(s) 1162
BstSCI CCNGG 2 cut(s) 54, 530
BstSFI CTRYAG 1 cut(s) 2485
BstSLI GKGCMC 1 cut(s) 1708
BstV1I GCAGC 5 cut(s) 639, 919, 1336, 2980, 2983
BstV2I GAAGAC 3 cut(s) 573, 1887, 2275
BstX2I RGATCY 5 cut(s) 237, 415, 829, 1401, 1832
BstYI RGATCY 5 cut(s) 237, 415, 829, 1401, 1832
BstZ17I GTATAC 1 cut(s) 3087
Bsu36I CCTNAGG 2 cut(s) 453, 686
BsuI GTATCC 3 cut(s) 1288, 2059, 2847
BsuRI GGCC 5 cut(s) 950, 1057, 1124, 2325, 2423
BtgI CCRYGG 7 cut(s) 209, 497, 577, 749, 1125, 1209, 2334
BtgZI GCGATG 2 cut(s) 1153, 1495
BtsIMutI CAGTG 3 cut(s) 279, 929, 2151
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 6 cut(s) 657, 711, 2323, 2327, 2492, 2631
CciI TCATGA 3 cut(s) 318, 2385, 2557
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 6 cut(s) 984, 1056, 1790, 2148, 2264, 3135
Csp6I GTAC 4 cut(s) 467, 842, 1993, 2497
CviQI GTAC 4 cut(s) 467, 842, 1993, 2497
DdeI CTNAG 8 cut(s) 36, 304, 420, 453, 686, 1559, 2675, 2901
EaeI YGGCCR 2 cut(s) 948, 2323
Eam1104I CTCTTC 3 cut(s) 1532, 2208, 2435
EarI CTCTTC 3 cut(s) 1532, 2208, 2435
Ecl136II GAGCTC 1 cut(s) 2663
Eco24I GRGCYC 2 cut(s) 1251, 2665
Eco32I GATATC 1 cut(s) 1891
Eco47I GGWCC 5 cut(s) 984, 1790, 2148, 2264, 3135
Eco53kI GAGCTC 1 cut(s) 2663
Eco57I CTGAAG 2 cut(s) 2232, 2547
Eco81I CCTNAGG 2 cut(s) 453, 686
Eco88I CYCGRG 1 cut(s) 1089
Eco91I GGTNACC 1 cut(s) 1162
EcoICRI GAGCTC 1 cut(s) 2663
EcoNI CCTNNNNNAGG 1 cut(s) 3142
EcoO109I RGGNCCY 2 cut(s) 1790, 3135
EcoO65I GGTNACC 1 cut(s) 1162
EcoRI GAATTC 3 cut(s) 804, 1455, 2896
EcoRII CCWGG 2 cut(s) 54, 530
EcoRV GATATC 1 cut(s) 1891
EcoT22I ATGCAT 4 cut(s) 69, 2052, 2611, 2626
EcoT38I GRGCYC 2 cut(s) 1251, 2665
FalI AAGNNNNNCTT 8 cut(s) 1600, 1632, 2433, 2465, 2483, 2515, 2649, 2681
FaqI GGGAC 4 cut(s) 1360, 2161, 2833, 3148
FauI CCCGC 2 cut(s) 581, 2367
FauNDI CATATG 1 cut(s) 2255
FbaI TGATCA 4 cut(s) 1255, 1783, 1986, 2098
FblI GTMKAC 2 cut(s) 205, 3086
Fnu4HI GCNGC 7 cut(s) 653, 933, 1325, 1528, 1947, 2994, 2997
FriOI GRGCYC 2 cut(s) 1251, 2665
Fsp4HI GCNGC 7 cut(s) 653, 933, 1325, 1528, 1947, 2994, 2997
FspBI CTAG 9 cut(s) 72, 146, 192, 227, 464, 897, 2237, 2630, 3144
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 7 cut(s) 653, 933, 1325, 1528, 1947, 2994, 2997
GsaI CCCAGC 1 cut(s) 1176
GsuI CTGGAG 1 cut(s) 3111
HaeII RGCGCY 1 cut(s) 1148
HaeIII GGCC 5 cut(s) 950, 1057, 1124, 2325, 2423
HapII CCGG 1 cut(s) 618
HhaI GCGC 1 cut(s) 1147
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HincII GTYRAC 2 cut(s) 2405, 3045
HindII GTYRAC 2 cut(s) 2405, 3045
HindIII AAGCTT 2 cut(s) 2001, 2903
HpaII CCGG 1 cut(s) 618
HphI GGTGA 5 cut(s) 496, 575, 1156, 1495, 1996
Hpy166II GTNNAC 5 cut(s) 206, 1086, 2405, 3045, 3087
Hpy188I TCNGA 9 cut(s) 37, 439, 988, 1217, 1837, 2369, 2466, 2478, 2910
Hpy8I GTNNAC 5 cut(s) 206, 1086, 2405, 3045, 3087
Hpy99I CGWCG 1 cut(s) 1064
HpyCH4III ACNGT 2 cut(s) 210, 2024
HpyCH4IV ACGT 1 cut(s) 2407
HpyF10VI GCNNNNNNNGC 8 cut(s) 58, 188, 309, 493, 1232, 1691, 2276, 2630
HpyF3I CTNAG 8 cut(s) 36, 304, 420, 453, 686, 1559, 2675, 2901
HpySE526I ACGT 1 cut(s) 2407
HspAI GCGC 1 cut(s) 1145
Ksp22I TGATCA 4 cut(s) 1255, 1783, 1986, 2098
LguI GCTCTTC 2 cut(s) 1532, 2435
LmnI GCTCC 5 cut(s) 58, 1535, 1871, 2275, 2660
Lsp1109I GCAGC 5 cut(s) 639, 919, 1336, 2980, 2983
LweI GCATC 8 cut(s) 256, 398, 1472, 1769, 1831, 2027, 2037, 2319
MaeI CTAG 9 cut(s) 72, 146, 192, 227, 464, 897, 2237, 2630, 3144
MaeII ACGT 1 cut(s) 2407
MaeIII GTNAC 3 cut(s) 277, 1162, 1443
MbiI CCGCTC 1 cut(s) 1530
MfeI CAATTG 4 cut(s) 81, 714, 1695, 1751
MflI RGATCY 5 cut(s) 237, 415, 829, 1401, 1832
MhlI GDGCHC 3 cut(s) 1251, 1708, 2665
MlsI TGGCCA 2 cut(s) 950, 2325
MluNI TGGCCA 2 cut(s) 950, 2325
MlyI GAGTC 2 cut(s) 316, 2410
Mox20I TGGCCA 2 cut(s) 950, 2325
Mph1103I ATGCAT 4 cut(s) 69, 2052, 2611, 2626
MroXI GAANNNNTTC 1 cut(s) 2714
MscI TGGCCA 2 cut(s) 950, 2325
MslI CAYNNNNRTG 1 cut(s) 284
Msp20I TGGCCA 2 cut(s) 950, 2325
MspA1I CMGCKG 2 cut(s) 253, 836
MspCI CTTAAG 2 cut(s) 937, 1475
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 2 cut(s) 56, 532
MunI CAATTG 4 cut(s) 81, 714, 1695, 1751
Mva1269I GAATGC 1 cut(s) 2611
MvaI CCWGG 2 cut(s) 56, 532
MwoI GCNNNNNNNGC 8 cut(s) 58, 188, 309, 493, 1232, 1691, 2276, 2630
NcoI CCATGG 6 cut(s) 497, 577, 749, 1125, 1209, 2334
NdeI CATATG 1 cut(s) 2255
NheI GCTAGC 1 cut(s) 2629
NlaIV GGNNCC 6 cut(s) 831, 985, 1403, 1791, 2149, 3136
NmeAIII GCCGAG 2 cut(s) 2659, 3025
NmuCI GTSAC 3 cut(s) 277, 1162, 1443
NsiI ATGCAT 4 cut(s) 69, 2052, 2611, 2626
NspI RCATGY 1 cut(s) 3074
OliI CACNNNNGTG 1 cut(s) 284
PagI TCATGA 3 cut(s) 318, 2385, 2557
PciSI GCTCTTC 2 cut(s) 1532, 2435
PctI GAATGC 1 cut(s) 2611
PdmI GAANNNNTTC 1 cut(s) 2714
PflFI GACNNNGTC 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 498
PkrI GCNGC 7 cut(s) 654, 934, 1326, 1529, 1948, 2995, 2998
PleI GAGTC 2 cut(s) 316, 2409
PpsI GAGTC 2 cut(s) 316, 2409
PpuMI RGGWCCY 2 cut(s) 1790, 3135
PsiI TTATAA 3 cut(s) 1409, 3057, 3154
Psp124BI GAGCTC 1 cut(s) 2665
Psp5II RGGWCCY 2 cut(s) 1790, 3135
Psp6I CCWGG 2 cut(s) 54, 530
PspEI GGTNACC 1 cut(s) 1162
PspFI CCCAGC 1 cut(s) 1172
PspGI CCWGG 2 cut(s) 54, 530
PspN4I GGNNCC 6 cut(s) 831, 985, 1403, 1791, 2149, 3136
PspPI GGNCC 6 cut(s) 984, 1056, 1790, 2148, 2264, 3135
PspPPI RGGWCCY 2 cut(s) 1790, 3135
PsuI RGATCY 5 cut(s) 237, 415, 829, 1401, 1832
PsyI GACNNNGTC 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 4 cut(s) 468, 843, 1994, 2498
RsaNI GTAC 4 cut(s) 467, 842, 1993, 2497
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 2665
SapI GCTCTTC 2 cut(s) 1532, 2435
SatI GCNGC 7 cut(s) 653, 933, 1325, 1528, 1947, 2994, 2997
Sau96I GGNCC 6 cut(s) 984, 1056, 1790, 2148, 2264, 3135
SchI GAGTC 2 cut(s) 316, 2410
ScrFI CCNGG 2 cut(s) 56, 532
SduI GDGCHC 3 cut(s) 1251, 1708, 2665
SfaNI GCATC 8 cut(s) 256, 398, 1472, 1769, 1831, 2027, 2037, 2319
SfcI CTRYAG 1 cut(s) 2485
SinI GGWCC 5 cut(s) 984, 1790, 2148, 2264, 3135
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 5 cut(s) 937, 1333, 1475, 1828, 2345
SmoI CTYRAG 5 cut(s) 937, 1333, 1475, 1828, 2345
SsiI CCGC 6 cut(s) 253, 574, 1528, 1947, 2374, 2494
SspI AATATT 2 cut(s) 106, 1104
SspMI CTAG 9 cut(s) 72, 146, 192, 227, 464, 897, 2237, 2630, 3144
SstI GAGCTC 1 cut(s) 2665
StyD4I CCNGG 2 cut(s) 54, 530
TaaI ACNGT 2 cut(s) 210, 2024
TaiI ACGT 1 cut(s) 2410
TaqI TCGA 9 cut(s) 355, 368, 1062, 1329, 1642, 1939, 2143, 2708, 2730
TauI GCSGC 2 cut(s) 1530, 1949
TscAI CASTG 3 cut(s) 286, 929, 2158
TseFI GTSAC 3 cut(s) 277, 1162, 1443
TseI GCWGC 5 cut(s) 652, 932, 1324, 2993, 2996
Tsp45I GTSAC 3 cut(s) 277, 1162, 1443
TspGWI ACGGA 3 cut(s) 1364, 1944, 2837
TspRI CASTG 3 cut(s) 286, 929, 2158
Tth111I GACNNNGTC 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 498
Vha464I CTTAAG 2 cut(s) 937, 1475
VpaK11BI GGWCC 5 cut(s) 984, 1790, 2148, 2264, 3135
XagI CCTNNNNNAGG 1 cut(s) 3142
XapI RAATTY 4 cut(s) 804, 1455, 1978, 2896
XbaI TCTAGA 2 cut(s) 226, 2236
XceI RCATGY 1 cut(s) 3074
XcmI CCANNNNNNNNNTGG 2 cut(s) 1513, 2014
XmaJI CCTAGG 1 cut(s) 3143
XmiI GTMKAC 2 cut(s) 205, 3086
XmnI GAANNNNTTC 1 cut(s) 2714
XspI CTAG 9 cut(s) 72, 146, 192, 227, 464, 897, 2237, 2630, 3144
Zsp2I ATGCAT 4 cut(s) 69, 2052, 2611, 2626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.