Rorug05G0339500

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000085
Physical Location & Seq
Forward (+)
41292894 .. 41296793
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0339500.1

Sequence Viewer

Length: 2814 bp
ATGGTTCGCTGTATCTCAACCCAAGAAAATATTTTGTCAAACCTTATTCTCTGCCACGACCCCTCCATGGAACAATCTTACATGCAAATGTCACAAAAATTCTATGAATCCATGAAAGCTTGTGCATCTCTAAGGTCGATCCCCATTGCCCGAAAACTCCATGGCCAACTCATTTCTGTAGGATTGGACTCTGCCATTTTCCTTCAGAACCATCTCTTGCATATGTATTCCCGTTGCAGCTTGATTGATGATGCTCGCCAGATTTTCTTCAGTATTCAACATCCTAATGTGTTTAGTTGGAATACAATGATTAGCGCGTTGGTAGACTTGGGTCACATGGGGGAGGCAGAGAAGTTGTTCAATGAAATGCCTGAGAGAGACTCCGTCTCTTGGACTACAATGATGTCTGGCCATTTTCATAATGGGCAACCCAAGGATGCAATTAAAGTGTTTGCTTCAATGGTATGGAATTGTGATAATTTCTATGACCCATTTTCCTTCTCTTGCGTAATGAAGGCTTGTGGTAGTCTTGGTCACATTAAGTTGGCTCTTCAGTTGCATACTCTAGTGGAGAAATTAAATTTTGGAGGCAACATGGTTATTCAAAATTCTATAATTGACATGTACATCAAGTGTGGTGCACTGCGTTTGGCTGAGAGAATGTTTATGAGGATCCCTAATCCTAGTTTGTTTTGTTGGAACAGTATGATCTATGGCTGCTCTAAACTTTATGGCGTCAGAAGGGCTCTCCATATGTTCATTGAAATGCCTGAACGTGATTGTGTGTCTTGGAATACCATAATATCAATCTTTTCTCAACATGGTTTTGGGGTTGAGAGTCTTAGTATGTTTGTTGAGATGTGGAACCATGGTTTTAGACCAAATGCTATGATATATGCTACTATACTTAGTGCATGTGCAAGTATACATGATCTTGAATGGGGTAGCCATTTGCATGCTCGGATACTCCGTATGGAACCAAGTATGGATGTTTTTGCAGGTAGTGGGCTGATTGATATGTATGTGAAATGTGGACAGTTGCATCTTGCTAGGCAGGTGTTTGACAACATGACAGAACACAATGCAGTTTCTTGGACTTCTATGATCAGTGGAGCCATGCAGTTTGGGCTTGAAGATGAAGCTTTAGTACTGTTTAACCGAATGAGAAAATCTCCTATTGCCTTGGATGAGTTTACTCTTGCAACAGTTCTTGGGGTTTGTTCAGGCCATGAGCATGCTTGGGTTGGGGAGCAGCTCCATGGATGTACAATCAAAGGTGGAATGATCTCCTCTATTCCTGTAGGGAATGCTCTTGTTACGATGTATGCAAAATGTGGAAACACTGATAAAGCCAGCCAAGCATTTGAGTTGATGCCTGCTAAAGATATAATATCATGGACAGCCATGATCACAGCATTCTCTCAAACTGGTAATGTTGAAAAATCCCGAGAGTATTTTGATAAAATGCCAGAGCGAAATGTCATAAGTTGGAACTCAATGTTAGGAACATATTTCCAAACTGGTTTATGGGAAGAAGGCCTTAAATTGTATACTCTTATGCGAAGGGTAGGGGTTAACCTGGATTGGATCACACTAGTAACTTCAATCAGTGCCTGTGCTGATTTGGCAATATTGAAACTTGGGCTGCAGATTATAGCTCAAGCTGAAAAATTAGGATTTGGTTCTAATGTTTCAGTCATGAATAGCATTATTACTATGTATTCAAGATGTGGACGAATTATAGAAGCGAAAAGAGTGTTTGATTCAATATGTGATAAAAATTTGATTTCTTGGAATGCAGTTATGGCTGGATATGCTCAAAATGGACAAGGTAGGAAGGTGATCGAGGTTTTTGAGAATATGTTGAAAATGGACTGCACACCTGATCATATAAGCTATGTATCTGTTCTATCAGGTTGTGGCCATTCAGGGCTCGTAACAGAGGGGAAACACTACTTCAGTTCTATGACTGAAGATTTTGGCATCAATCCTACATGTGAACATTTTGCTTGTATGGTAGATCTACTTGGTCGGGCTGGGTTACTGAAGGAGGCCAGGAATTTGATTGATGCAATGCCCTTTAAGCCAAATGCTGCTATCTGGGGAGCTCTTCTTGGTGCTTGCCGGCTTCATCGCGATTATAATTTAGCAGAATTTGCAGCAAGAAATTTGCTTGAATTAGATTTAGATGATTCTGGCAGTTATGTCCTTCTAGCTAATACATATTCAGATTGTGGACAACTAGAAGCTTTTGCAGATGTAAGAAAACAGATGAGAAAGAAAGGAATAGAGAAAAATCCTGGATGTAGCTGGATAGAGGTTAATAATAGGGTACACGTGTTCACTGTAGATGACACTAATCATCCACAAATCAAGGATGTTTATAGAATACTAGAGGAGATAGTCAAGAAGATAGAAGATACAGGATGCTATGTCAATCCAACTAATGCAGTTCGTTCTCAGTGCCATCACAGTGAGAAGCTTGCTGTTGCTTTTGGGTTGCTTAGCTTGCCTGCTTGGATGCCTATCTATGTAATGAAAAATCTTCGAGTTTGCCATGATTGTCACTTGGATCTACAACCGGAGAACTCTGATAGAGTCAAGAACATGGTATCTATTTTAATGAGAGGCCCTATCTCATCCTACGTTTCTTGGCTTCCTGGAAGGCATGCCCTGCTCCCTGAATTGCTTCTTTCCACTCTTCAGGCCTCCGGGTCACCATGCCTACTCAAGCTAATGGCTACTACTTCCTTAACAATGCTGGTCTTTCTGTTCAATTGGCTTTACATTCTGGCTGTGCAAAAGTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

937

Amino Acids

105.3

Weight (kDa)

6.56

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 94 - 123 4.5e-06 PPR repeat
PPR_2 PF13041 95 - 126 4e-08 PPR repeat family
PPR PF01535 98 - 126 2.8e-07 PPR repeat
PPR_2 PF13041 127 - 174 1e-06 PPR repeat family
PPR_2 PF13041 361 - 406 3.5e-06 PPR repeat family
PPR PF01535 464 - 494 3.4e-06 PPR repeat
PPR_2 PF13041 492 - 540 2e-07 PPR repeat family
PPR_2 PF13041 594 - 641 6.9e-11 PPR repeat family
PPR PF01535 596 - 626 6.4e-06 PPR repeat
E_motif PF20431 711 - 773 2.1e-19 E motif
DYW_deaminase PF14432 821 - 857 1.7e-10 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2142
AarI CACCTGC 1 cut(s) 1045
Acc36I ACCTGC 2 cut(s) 989, 1045
AccI GTMKAC 3 cut(s) 324, 925, 1550
AccII CGCG 2 cut(s) 317, 2136
AclWI GGATC 5 cut(s) 133, 667, 680, 1595, 2580
AcoI YGGCCR 3 cut(s) 163, 409, 1921
AcsI RAATTY 7 cut(s) 98, 580, 607, 1780, 2059, 2153, 2167
AcuI CTGAAG 7 cut(s) 188, 253, 536, 1942, 1992, 2066, 2687
AcvI CACGTG 1 cut(s) 2338
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 4 cut(s) 626, 1149, 1267, 2334
AfiI CCNNNNNNNGG 2 cut(s) 67, 390
AflIII ACRYGT 4 cut(s) 621, 1994, 2335, 2337
AhlI ACTAGT 1 cut(s) 1594
AjnI CCWGG 4 cut(s) 1578, 2054, 2299, 2659
Alw21I GWGCWC 2 cut(s) 643, 2110
Alw26I GTCTC 2 cut(s) 372, 391
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 5 cut(s) 133, 667, 680, 1595, 2580
AlwNI CAGNNNCTG 1 cut(s) 1614
Ama87I CYCGRG 1 cut(s) 1446
AoxI GGCC 8 cut(s) 163, 409, 1225, 1537, 1921, 2052, 2629, 2706
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 6 cut(s) 237, 717, 1252, 1645, 2093, 2159
ApoI RAATTY 7 cut(s) 98, 580, 607, 1780, 2059, 2153, 2167
Asp700I GAANNNNTTC 2 cut(s) 356, 2688
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 2630
AsuC2I CCSGG 1 cut(s) 2713
AsuHPI GGTGA 2 cut(s) 1852, 2709
AvaI CYCGRG 1 cut(s) 1446
BaeGI GKGCMC 1 cut(s) 643
BaeI ACNNNNGTAYC 2 cut(s) 2324, 2357
BalI TGGCCA 3 cut(s) 165, 411, 1923
BamHI GGATCC 1 cut(s) 672
BanII GRGCYC 3 cut(s) 748, 1935, 2110
BarI GAAGNNNNNNTAC 2 cut(s) 1131, 1163
BbrPI CACGTG 1 cut(s) 2338
Bbv12I GWGCWC 2 cut(s) 643, 2110
BbvI GCAGC 6 cut(s) 249, 704, 1264, 1632, 2080, 2171
BccI CCATC 2 cut(s) 219, 2475
BciT130I CCWGG 4 cut(s) 1580, 2056, 2301, 2661
BciVI GTATCC 1 cut(s) 957
BclI TGATCA 3 cut(s) 1104, 1407, 1885
BcnI CCSGG 1 cut(s) 2713
BcoDI GTCTC 2 cut(s) 372, 391
BcuI ACTAGT 1 cut(s) 1594
BfaI CTAG 7 cut(s) 566, 684, 1050, 1595, 2213, 2243, 2393
BfmI CTRYAG 4 cut(s) 177, 1299, 1646, 2346
BfuAI ACCTGC 2 cut(s) 989, 1045
BfuI GTATCC 1 cut(s) 957
BglII AGATCT 1 cut(s) 2020
BisI GCNGC 6 cut(s) 238, 718, 1253, 1646, 2094, 2160
BlpI GCTNAGC 1 cut(s) 2504
BlsI GCNGC 6 cut(s) 239, 719, 1254, 1647, 2095, 2161
BmcAI AGTACT 1 cut(s) 1149
Bme1390I CCNGG 5 cut(s) 1580, 2056, 2301, 2661, 2713
BmeT110I CYCGRG 1 cut(s) 1446
BmgT120I GGNCC 1 cut(s) 2630
BmiI GGNNCC 4 cut(s) 674, 866, 978, 1114
BmrFI CCNGG 5 cut(s) 1580, 2056, 2301, 2661, 2713
BmsI GCATC 9 cut(s) 134, 241, 427, 1051, 1362, 1992, 2059, 2417, 2511
BoxI GACNNNNGTC 1 cut(s) 330
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 1156, 1188
Bpu1102I GCTNAGC 1 cut(s) 2504
BpuEI CTTGAG 2 cut(s) 1644, 2714
BpuMI CCSGG 1 cut(s) 2713
BsaAI YACGTR 1 cut(s) 2338
BsaBI GATNNNNATC 1 cut(s) 2525
BsaHI GRCGYC 1 cut(s) 735
BsaJI CCNNGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
BsaWI WCCGGW 1 cut(s) 2581
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 390
Bse118I RCCGGY 1 cut(s) 2124
Bse1I ACTGG 2 cut(s) 1432, 1525
Bse3DI GCAATG 2 cut(s) 144, 2079
Bse8I GATNNNNATC 1 cut(s) 2525
BseBI CCWGG 4 cut(s) 1580, 2056, 2301, 2661
BseDI CCNNGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
BseJI GATNNNNATC 1 cut(s) 2525
BseLI CCNNNNNNNGG 2 cut(s) 67, 390
BseMI GCAATG 2 cut(s) 144, 2079
BseMII CTCAG 3 cut(s) 363, 645, 2474
BseNI ACTGG 2 cut(s) 1432, 1525
BseRI GAGGAG 2 cut(s) 1279, 2411
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 6 cut(s) 249, 704, 1264, 1632, 2080, 2171
BseYI CCCAGC 1 cut(s) 2036
BsgI GTGCAG 1 cut(s) 1861
Bsh1236I CGCG 2 cut(s) 317, 2136
BshFI GGCC 8 cut(s) 165, 411, 1227, 1539, 1923, 2054, 2631, 2708
BsiHKAI GWGCWC 2 cut(s) 643, 2110
BsiHKCI CYCGRG 1 cut(s) 1446
BsiSI CCGG 3 cut(s) 2125, 2582, 2712
BslI CCNNNNNNNGG 2 cut(s) 67, 390
BsmAI GTCTC 2 cut(s) 372, 391
BsmBI CGTCTC 1 cut(s) 391
BsmI GAATGC 3 cut(s) 1312, 1415, 1801
BsnI GGCC 8 cut(s) 165, 411, 1227, 1539, 1923, 2054, 2631, 2708
BsoBI CYCGRG 1 cut(s) 1446
Bsp1286I GDGCHC 4 cut(s) 643, 748, 1935, 2110
Bsp1407I TGTACA 2 cut(s) 624, 1265
Bsp1720I GCTNAGC 1 cut(s) 2504
Bsp19I CCATGG 4 cut(s) 66, 160, 868, 1258
Bsp68I TCGCGA 1 cut(s) 2136
BspANI GGCC 8 cut(s) 165, 411, 1227, 1539, 1923, 2054, 2631, 2708
BspCNI CTCAG 3 cut(s) 364, 646, 2473
BspFNI CGCG 2 cut(s) 317, 2136
BspHI TCATGA 1 cut(s) 1698
BspLI GGNNCC 4 cut(s) 674, 866, 978, 1114
BspMAI CTGCAG 1 cut(s) 1650
BspMI ACCTGC 2 cut(s) 989, 1045
BspPI GGATC 5 cut(s) 133, 667, 680, 1595, 2580
BspQI GCTCTTC 2 cut(s) 555, 2115
BsrDI GCAATG 2 cut(s) 144, 2079
BsrFI RCCGGY 1 cut(s) 2124
BsrGI TGTACA 2 cut(s) 624, 1265
BsrI ACTGG 2 cut(s) 1432, 1525
BssAI RCCGGY 1 cut(s) 2124
BssECI CCNNGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
BssNAI GTATAC 2 cut(s) 926, 1551
BssNI GRCGYC 1 cut(s) 735
BssT1I CCWWGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
Bst1107I GTATAC 2 cut(s) 926, 1551
Bst2UI CCWGG 4 cut(s) 1580, 2056, 2301, 2661
Bst4CI ACNGT 6 cut(s) 704, 1038, 1152, 1207, 2347, 2474
Bst6I CTCTTC 3 cut(s) 555, 2115, 2706
BstACI GRCGYC 1 cut(s) 735
BstAPI GCANNNNNTGC 3 cut(s) 2156, 2674, 2806
BstAUI TGTACA 2 cut(s) 624, 1265
BstBAI YACGTR 1 cut(s) 2338
BstDEI CTNAG 7 cut(s) 131, 372, 654, 842, 908, 2460, 2504
BstDSI CCRYGG 4 cut(s) 66, 160, 868, 1258
BstEII GGTNACC 1 cut(s) 2715
BstFNI CGCG 2 cut(s) 317, 2136
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 2 cut(s) 372, 391
BstNI CCWGG 4 cut(s) 1580, 2056, 2301, 2661
BstNSI RCATGY 7 cut(s) 85, 625, 918, 959, 1238, 1998, 2672
BstPAI GACNNNNGTC 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 2715
BstSCI CCNGG 5 cut(s) 1578, 2054, 2299, 2659, 2711
BstSFI CTRYAG 4 cut(s) 177, 1299, 1646, 2346
BstSLI GKGCMC 1 cut(s) 643
BstUI CGCG 2 cut(s) 317, 2136
BstV1I GCAGC 6 cut(s) 249, 704, 1264, 1632, 2080, 2171
BstX2I RGATCY 3 cut(s) 672, 2020, 2572
BstYI RGATCY 3 cut(s) 672, 2020, 2572
BstZ17I GTATAC 2 cut(s) 926, 1551
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 8 cut(s) 165, 411, 1227, 1539, 1923, 2054, 2631, 2708
BtgI CCRYGG 4 cut(s) 66, 160, 868, 1258
BtgZI GCGATG 1 cut(s) 2117
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 7 cut(s) 641, 1114, 1341, 1615, 2343, 2468, 2479
BtuMI TCGCGA 1 cut(s) 2136
BveI ACCTGC 2 cut(s) 989, 1045
CaiI CAGNNNCTG 1 cut(s) 1614
CciI TCATGA 1 cut(s) 1698
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 2124
Cfr13I GGNCC 1 cut(s) 2630
CseI GACGC 1 cut(s) 724
Csp6I GTAC 4 cut(s) 625, 1148, 1266, 2333
CviQI GTAC 4 cut(s) 625, 1148, 1266, 2333
DdeI CTNAG 7 cut(s) 131, 372, 654, 842, 908, 2460, 2504
EaeI YGGCCR 3 cut(s) 163, 409, 1921
Eam1104I CTCTTC 3 cut(s) 555, 2115, 2706
EarI CTCTTC 3 cut(s) 555, 2115, 2706
Ecl136II GAGCTC 1 cut(s) 2108
Eco130I CCWWGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
Eco147I AGGCCT 2 cut(s) 1539, 2708
Eco24I GRGCYC 3 cut(s) 748, 1935, 2110
Eco53kI GAGCTC 1 cut(s) 2108
Eco57I CTGAAG 7 cut(s) 188, 253, 536, 1942, 1992, 2066, 2687
Eco72I CACGTG 1 cut(s) 2338
Eco88I CYCGRG 1 cut(s) 1446
Eco91I GGTNACC 1 cut(s) 2715
EcoICRI GAGCTC 1 cut(s) 2108
EcoO109I RGGNCCY 1 cut(s) 2630
EcoO65I GGTNACC 1 cut(s) 2715
EcoRII CCWGG 4 cut(s) 1578, 2054, 2299, 2659
EcoT14I CCWWGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
EcoT38I GRGCYC 3 cut(s) 748, 1935, 2110
ErhI CCWWGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
Esp3I CGTCTC 1 cut(s) 391
FalI AAGNNNNNCTT 2 cut(s) 1524, 1556
FauNDI CATATG 2 cut(s) 222, 753
FbaI TGATCA 3 cut(s) 1104, 1407, 1885
FblI GTMKAC 3 cut(s) 324, 925, 1550
Fnu4HI GCNGC 6 cut(s) 238, 718, 1253, 1646, 2094, 2160
FriOI GRGCYC 3 cut(s) 748, 1935, 2110
Fsp4HI GCNGC 6 cut(s) 238, 718, 1253, 1646, 2094, 2160
FspBI CTAG 7 cut(s) 566, 684, 1050, 1595, 2213, 2243, 2393
GlaI GCGC 1 cut(s) 316
GluI GCNGC 6 cut(s) 238, 718, 1253, 1646, 2094, 2160
GsaI CCCAGC 1 cut(s) 2040
HaeIII GGCC 8 cut(s) 165, 411, 1227, 1539, 1923, 2054, 2631, 2708
HapII CCGG 3 cut(s) 2125, 2582, 2712
HgaI GACGC 1 cut(s) 724
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 735
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 1576
HindII GTYRAC 1 cut(s) 1576
HindIII AAGCTT 4 cut(s) 117, 1140, 2247, 2480
HinfI GANTC 7 cut(s) 107, 188, 380, 838, 1763, 2192, 2598
HpaI GTTAAC 1 cut(s) 1576
HpaII CCGG 3 cut(s) 2125, 2582, 2712
HphI GGTGA 2 cut(s) 1852, 2709
Hpy188I TCNGA 5 cut(s) 207, 740, 963, 2230, 2593
Hpy188III TCNNGA 7 cut(s) 935, 1446, 1699, 1725, 2135, 2407, 2602
HpyCH4III ACNGT 6 cut(s) 704, 1038, 1152, 1207, 2347, 2474
HpyCH4IV ACGT 3 cut(s) 775, 2337, 2646
HpyF3I CTNAG 7 cut(s) 131, 372, 654, 842, 908, 2460, 2504
HpySE526I ACGT 3 cut(s) 775, 2337, 2646
Hsp92I GRCGYC 1 cut(s) 735
HspAI GCGC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 2124
KroNI GCCGGC 1 cut(s) 2126
Ksp22I TGATCA 3 cut(s) 1104, 1407, 1885
KspAI GTTAAC 1 cut(s) 1576
LguI GCTCTTC 2 cut(s) 555, 2115
LmnI GCTCC 5 cut(s) 1112, 1249, 1260, 2105, 2682
Lsp1109I GCAGC 6 cut(s) 249, 704, 1264, 1632, 2080, 2171
LweI GCATC 9 cut(s) 134, 241, 427, 1051, 1362, 1992, 2059, 2417, 2511
MaeI CTAG 7 cut(s) 566, 684, 1050, 1595, 2213, 2243, 2393
MaeII ACGT 3 cut(s) 775, 2337, 2646
MaeIII GTNAC 9 cut(s) 90, 332, 533, 1315, 1597, 1936, 2040, 2564, 2715
MfeI CAATTG 1 cut(s) 2776
MflI RGATCY 3 cut(s) 672, 2020, 2572
MhlI GDGCHC 4 cut(s) 643, 748, 1935, 2110
MlsI TGGCCA 3 cut(s) 165, 411, 1923
MluNI TGGCCA 3 cut(s) 165, 411, 1923
MlyI GAGTC 4 cut(s) 182, 374, 847, 2607
MmeI TCCRAC 4 cut(s) 278, 677, 1469, 2465
Mox20I TGGCCA 3 cut(s) 165, 411, 1923
MroNI GCCGGC 1 cut(s) 2124
MroXI GAANNNNTTC 2 cut(s) 356, 2688
MscI TGGCCA 3 cut(s) 165, 411, 1923
MslI CAYNNNNRTG 6 cut(s) 86, 285, 764, 954, 1233, 2472
Msp20I TGGCCA 3 cut(s) 165, 411, 1923
MspI CCGG 3 cut(s) 2125, 2582, 2712
MspR9I CCNGG 5 cut(s) 1580, 2056, 2301, 2661, 2713
MunI CAATTG 1 cut(s) 2776
Mva1269I GAATGC 3 cut(s) 1312, 1415, 1801
MvaI CCWGG 4 cut(s) 1580, 2056, 2301, 2661
MvnI CGCG 2 cut(s) 317, 2136
NaeI GCCGGC 1 cut(s) 2126
NciI CCSGG 1 cut(s) 2713
NcoI CCATGG 4 cut(s) 66, 160, 868, 1258
NdeI CATATG 2 cut(s) 222, 753
NgoMIV GCCGGC 1 cut(s) 2124
NlaIV GGNNCC 4 cut(s) 674, 866, 978, 1114
NmuCI GTSAC 5 cut(s) 90, 332, 533, 2564, 2715
NruI TCGCGA 1 cut(s) 2136
NspI RCATGY 7 cut(s) 85, 625, 918, 959, 1238, 1998, 2672
PaeI GCATGC 3 cut(s) 959, 1238, 2672
PagI TCATGA 1 cut(s) 1698
PaqCI CACCTGC 1 cut(s) 1045
PceI AGGCCT 2 cut(s) 1539, 2708
PciI ACATGT 2 cut(s) 621, 1994
PciSI GCTCTTC 2 cut(s) 555, 2115
PcsI WCGNNNNNNNCGW 1 cut(s) 967
PctI GAATGC 3 cut(s) 1312, 1415, 1801
PdiI GCCGGC 1 cut(s) 2126
PdmI GAANNNNTTC 2 cut(s) 356, 2688
PfeI GAWTC 3 cut(s) 107, 1763, 2192
PflFI GACNNNGTC 1 cut(s) 383
PfoI TCCNGGA 2 cut(s) 2299, 2659
PkrI GCNGC 6 cut(s) 239, 719, 1254, 1647, 2095, 2161
PleI GAGTC 4 cut(s) 182, 374, 846, 2606
PmaCI CACGTG 1 cut(s) 2338
PmlI CACGTG 1 cut(s) 2338
PpsI GAGTC 4 cut(s) 182, 374, 846, 2606
Ppu21I YACGTR 1 cut(s) 2338
PscI ACATGT 2 cut(s) 621, 1994
PshAI GACNNNNGTC 1 cut(s) 330
PsiI TTATAA 1 cut(s) 2142
Psp124BI GAGCTC 1 cut(s) 2110
Psp6I CCWGG 4 cut(s) 1578, 2054, 2299, 2659
PspCI CACGTG 1 cut(s) 2338
PspEI GGTNACC 1 cut(s) 2715
PspFI CCCAGC 1 cut(s) 2036
PspGI CCWGG 4 cut(s) 1578, 2054, 2299, 2659
PspN4I GGNNCC 4 cut(s) 674, 866, 978, 1114
PspPI GGNCC 1 cut(s) 2630
PstI CTGCAG 1 cut(s) 1650
PstNI CAGNNNCTG 1 cut(s) 1614
PsuI RGATCY 3 cut(s) 672, 2020, 2572
PsyI GACNNNGTC 1 cut(s) 383
RruI TCGCGA 1 cut(s) 2136
RsaI GTAC 4 cut(s) 626, 1149, 1267, 2334
RsaNI GTAC 4 cut(s) 625, 1148, 1266, 2333
RseI CAYNNNNRTG 6 cut(s) 86, 285, 764, 954, 1233, 2472
SacI GAGCTC 1 cut(s) 2110
SapI GCTCTTC 2 cut(s) 555, 2115
SatI GCNGC 6 cut(s) 238, 718, 1253, 1646, 2094, 2160
Sau96I GGNCC 1 cut(s) 2630
ScaI AGTACT 1 cut(s) 1149
SchI GAGTC 4 cut(s) 182, 374, 847, 2607
ScrFI CCNGG 5 cut(s) 1580, 2056, 2301, 2661, 2713
SduI GDGCHC 4 cut(s) 643, 748, 1935, 2110
SfaNI GCATC 9 cut(s) 134, 241, 427, 1051, 1362, 1992, 2059, 2417, 2511
SfcI CTRYAG 4 cut(s) 177, 1299, 1646, 2346
SmiMI CAYNNNNRTG 6 cut(s) 86, 285, 764, 954, 1233, 2472
SmlI CTYRAG 2 cut(s) 1659, 2729
SmoI CTYRAG 2 cut(s) 1659, 2729
SpeI ACTAGT 1 cut(s) 1594
SphI GCATGC 3 cut(s) 959, 1238, 2672
SseBI AGGCCT 2 cut(s) 1539, 2708
SspI AATATT 2 cut(s) 31, 1632
SspMI CTAG 7 cut(s) 566, 684, 1050, 1595, 2213, 2243, 2393
SstI GAGCTC 1 cut(s) 2110
StuI AGGCCT 2 cut(s) 1539, 2708
StyD4I CCNGG 5 cut(s) 1578, 2054, 2299, 2659, 2711
StyI CCWWGG 6 cut(s) 66, 160, 432, 868, 1182, 1258
TaaI ACNGT 6 cut(s) 704, 1038, 1152, 1207, 2347, 2474
TaiI ACGT 3 cut(s) 778, 2340, 2649
TaqI TCGA 3 cut(s) 137, 1845, 2548
TatI WGTACW 3 cut(s) 624, 1147, 1265
TfiI GAWTC 3 cut(s) 107, 1763, 2192
TscAI CASTG 7 cut(s) 648, 1114, 1348, 1615, 2350, 2468, 2479
TseFI GTSAC 5 cut(s) 90, 332, 533, 2564, 2715
TseI GCWGC 6 cut(s) 237, 717, 1252, 1645, 2093, 2159
Tsp45I GTSAC 5 cut(s) 90, 332, 533, 2564, 2715
TspGWI ACGGA 2 cut(s) 373, 959
TspRI CASTG 7 cut(s) 648, 1114, 1348, 1615, 2350, 2468, 2479
Tth111I GACNNNGTC 1 cut(s) 383
VneI GTGCAC 1 cut(s) 639
XapI RAATTY 7 cut(s) 98, 580, 607, 1780, 2059, 2153, 2167
XceI RCATGY 7 cut(s) 85, 625, 918, 959, 1238, 1998, 2672
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XmiI GTMKAC 3 cut(s) 324, 925, 1550
XmnI GAANNNNTTC 2 cut(s) 356, 2688
XspI CTAG 7 cut(s) 566, 684, 1050, 1595, 2213, 2243, 2393
ZrmI AGTACT 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.