Rorug03G0206100

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000085
Physical Location & Seq
Forward (+)
18282181 .. 18292199
10019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0206100.1

Sequence Viewer

Length: 2751 bp
ATGGCTTGGACGGATAAAGATGGTTGTAATGGGAAAGAAGGGGACCCAGTTGTAGAAAATGGATTCTTGAACTGTTCACAGCCTTCTCCTAGTACCAGTGGCTCTCTTCTTGCTGGTGCAACTCCCGAAGGGGGGAAGAGTTTTGAAGTGAAAGAGTCGATTTCTTATGCCAACATTCTTCGTTCAAGGAACAAGTTTTCTGATGCTCTTAGTCTTTACGAGACTGTGTTGGAGAAAGATGCCGGAAATGTGGAAGCTCATATTGGGAAAGGAATATGCTTGCAAATGAAGAATATGGGAAGGCCTGCTTTTGACAGTTTCATGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCACCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCAGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTGCTGGCAACACTCAAGATGGATTGCAGAAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCATATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTACTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAACTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTACAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGACAGAGACAACCTTGATAAAGCAGTGGAGTGTTATCAGATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATAATTGCAAATCCCACATATGCAGAAGCATATAACAACCTAGGTGTTCTTTACAGAGATGCTGGCAATATTTCTATGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAATGCAGGCCAGAACCGATTGCTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGCTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCAGAACGACCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGAGAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTCGCAAGCATTGTTAGGGAAGATAAGATTGATATCTTGGTGGAACTTACTGGTCATACTGCTAACAATAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCGATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAAGCAGAAGCATGTTGAGGTGCTAGTTCGATTACCAGAATGCTTCCTTTGTTATGCACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTCGCAAAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCTCGCCTTGTAGTAAAATGTAAGCCCTTTAGTTGCGATAGTGTGAGAGAGAGATTTCTTTCAACATTGGAGCAGCTGGGGTTGGAACCACTACGTGTTGATCTTCTGCCTCTAATTTTACTCAATTACGATCATATGCAAGCATATTCTCTCATGGACATTAGTTTGGATACTTTTCCTTATGCTGGAACAACCACAACATGTGAATCTTTATATATGGGCGTTCCATGTGTTACTATGGCTGGTTCAGTACATGCACACAATGTCGGTGTTAGTATTCTCAGCACAGTGGGATTGGGAAACCTTATTGCTAAAAATGAGGAAGAATATGTTCAGTTGGCTGTGCAGTTGGCCTCTGACATAACAGCACTTTCAAATCTGAGGATGAGTCTGCGAGACCTCATGTCCAGGTCGCCTGTCTGTGATGGACCAAAGTTTACCCTTGGGCTGGAGTCAGCATACAGGAACATGTGGCGCAGGTACTGCAAAGGTGATGTGCCATCACAACGGCACATGGAAATACTACAACAGGAGGTAACCCCTGAAGAGCCAACTACCAAAATTGCTGAACTAATAAGGATTTCCGAATCAGGTTTTCCTGCATCGATTAAGTCCAATGGATTTAATCCTTGTCCAACACCTATGCCTAATCTCTCTTCTAGTGAAGAAAATGGAGTCTGA

Protein Analysis

916

Amino Acids

101.64

Weight (kDa)

5.58

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 193 - 219 6.4e-07 Tetratricopeptide repeat
TPR_1 PF00515 227 - 260 1.8e-09 Tetratricopeptide repeat
TPR_2 PF07719 227 - 259 1.4e-06 Tetratricopeptide repeat
TPR_8 PF13181 227 - 259 1.6e-07 Tetratricopeptide repeat
TPR_12 PF13424 227 - 295 1.3e-06 Tetratricopeptide repeat
TPR_1 PF00515 336 - 369 9.2e-10 Tetratricopeptide repeat
TPR_2 PF07719 336 - 368 3.6e-06 Tetratricopeptide repeat
TPR_11 PF13414 345 - 383 2.9e-06 TPR repeat
TPR_12 PF13424 371 - 434 1.6e-08 Tetratricopeptide repeat
TPR_1 PF00515 404 - 436 8.8e-10 Tetratricopeptide repeat
TPR_2 PF07719 404 - 436 2.9e-07 Tetratricopeptide repeat
TPR_8 PF13181 404 - 436 1.6e-07 Tetratricopeptide repeat
Glyco_transf_41 PF13844 483 - 640 1.3e-22 Glycosyl transferase family 41
Glyco_transf_41 PF13844 657 - 836 1.5e-25 Glycosyl transferase family 41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 591, 891
Acc36I ACCTGC 1 cut(s) 2538
AccI GTMKAC 3 cut(s) 606, 1137, 1402
AciI CCGC 1 cut(s) 459
AclWI GGATC 4 cut(s) 560, 1295, 1448, 1649
AcsI RAATTY 2 cut(s) 2049, 2068
AcuI CTGAAG 2 cut(s) 702, 2634
AdeI CACNNNGTG 1 cut(s) 2165
AfaI GTAC 5 cut(s) 94, 383, 917, 2322, 2552
AfiI CCNNNNNNNGG 7 cut(s) 131, 132, 403, 406, 1943, 2255, 2518
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 3 cut(s) 2164, 2270, 2538
AhdI GACNNNNNGTC 2 cut(s) 730, 2473
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 1 cut(s) 2477
AjuI GAANNNNNNNTTGG 4 cut(s) 246, 278, 644, 676
AloI GAACNNNNNNTCC 2 cut(s) 969, 1001
AluBI AGCT 8 cut(s) 257, 511, 554, 764, 1187, 1529, 1967, 2146
AluI AGCT 8 cut(s) 257, 511, 554, 764, 1187, 1529, 1967, 2146
Alw26I GTCTC 3 cut(s) 215, 1041, 2460
AlwI GGATC 4 cut(s) 560, 1295, 1448, 1649
AlwNI CAGNNNCTG 3 cut(s) 1395, 1949, 2553
AoxI GGCC 8 cut(s) 302, 327, 394, 668, 1321, 1769, 1946, 2421
ApeKI GCWGC 7 cut(s) 410, 461, 656, 1163, 1166, 2032, 2143
ApoI RAATTY 2 cut(s) 2049, 2068
Asp700I GAANNNNTTC 1 cut(s) 2400
AspA2I CCTAGG 1 cut(s) 1228
AspLEI GCGC 2 cut(s) 637, 2547
AspS9I GGNCC 4 cut(s) 43, 394, 1946, 2498
AsuHPI GGTGA 2 cut(s) 950, 2573
AvaII GGWCC 2 cut(s) 43, 2498
AvrII CCTAGG 1 cut(s) 1228
AxyI CCTNAGG 2 cut(s) 401, 1938
BaeGI GKGCMC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 566
BbvI GCAGC 7 cut(s) 397, 448, 643, 1150, 1153, 2019, 2155
BccI CCATC 7 cut(s) 14, 338, 524, 1075, 1150, 2489, 2578
BceAI ACGGC 2 cut(s) 648, 2594
BciT130I CCWGG 1 cut(s) 2479
BciVI GTATCC 1 cut(s) 2233
BcoDI GTCTC 3 cut(s) 215, 1041, 2460
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 7 cut(s) 90, 473, 501, 761, 1229, 1895, 2730
BfmI CTRYAG 1 cut(s) 1578
BfoI RGCGCY 1 cut(s) 638
BfrI CTTAAG 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 2538
BfuI GTATCC 1 cut(s) 2233
BglII AGATCT 1 cut(s) 490
BisI GCNGC 7 cut(s) 411, 462, 657, 1164, 1167, 2033, 2144
BlnI CCTAGG 1 cut(s) 1228
BlsI GCNGC 7 cut(s) 412, 463, 658, 1165, 1168, 2034, 2145
Bme1390I CCNGG 1 cut(s) 2479
Bme18I GGWCC 2 cut(s) 43, 2498
BmeRI GACNNNNNGTC 2 cut(s) 730, 2473
BmgT120I GGNCC 4 cut(s) 43, 394, 1946, 2498
BmiI GGNNCC 3 cut(s) 44, 45, 2157
BmrFI CCNGG 1 cut(s) 2479
BmrI ACTGGG 2 cut(s) 41, 1405
BmsI GCATC 9 cut(s) 193, 229, 609, 898, 1150, 1237, 1264, 1585, 2681
BmuI ACTGGG 2 cut(s) 41, 1405
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 3 cut(s) 1666, 1947, 2540
BpuEI CTTGAG 1 cut(s) 510
Bsa29I ATCGAT 2 cut(s) 852, 2675
BsaAI YACGTR 1 cut(s) 2165
BsaBI GATNNNNATC 3 cut(s) 852, 1483, 1709
BsaI GGTCTC 1 cut(s) 2460
BsaJI CCNNGG 3 cut(s) 595, 1228, 2512
Bsc4I CCNNNNNNNGG 7 cut(s) 131, 132, 403, 406, 1943, 2255, 2518
Bse118I RCCGGY 1 cut(s) 1767
Bse1I ACTGG 7 cut(s) 47, 96, 899, 1400, 1732, 1819, 1857
Bse21I CCTNAGG 2 cut(s) 401, 1938
Bse3DI GCAATG 2 cut(s) 1292, 1347
Bse8I GATNNNNATC 3 cut(s) 852, 1483, 1709
BseBI CCWGG 1 cut(s) 2479
BseCI ATCGAT 2 cut(s) 852, 2675
BseDI CCNNGG 3 cut(s) 595, 1228, 2512
BseGI GGATG 2 cut(s) 1165, 2460
BseJI GATNNNNATC 3 cut(s) 852, 1483, 1709
BseLI CCNNNNNNNGG 7 cut(s) 131, 132, 403, 406, 1943, 2255, 2518
BseMI GCAATG 2 cut(s) 1292, 1347
BseMII CTCAG 6 cut(s) 357, 405, 1929, 2070, 2365, 2441
BseNI ACTGG 7 cut(s) 47, 96, 899, 1400, 1732, 1819, 1857
BseRI GAGGAG 1 cut(s) 1521
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 7 cut(s) 397, 448, 643, 1150, 1153, 2019, 2155
BseYI CCCAGC 1 cut(s) 2146
BsgI GTGCAG 3 cut(s) 1026, 1758, 2435
BshFI GGCC 8 cut(s) 304, 329, 396, 670, 1323, 1771, 1948, 2423
BshVI ATCGAT 2 cut(s) 852, 2675
BsiSI CCGG 2 cut(s) 243, 1768
BslFI GGGAC 3 cut(s) 56, 1406, 1454
BslI CCNNNNNNNGG 7 cut(s) 131, 132, 403, 406, 1943, 2255, 2518
BsmAI GTCTC 3 cut(s) 215, 1041, 2460
BsmFI GGGAC 3 cut(s) 56, 1406, 1454
BsmI GAATGC 4 cut(s) 355, 442, 473, 1916
BsnI GGCC 8 cut(s) 304, 329, 396, 670, 1323, 1771, 1948, 2423
Bso31I GGTCTC 1 cut(s) 2460
Bsp1286I GDGCHC 1 cut(s) 361
Bsp1407I TGTACA 2 cut(s) 381, 915
Bsp143I GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
BspACI CCGC 1 cut(s) 459
BspANI GGCC 8 cut(s) 304, 329, 396, 670, 1323, 1771, 1948, 2423
BspCNI CTCAG 6 cut(s) 356, 406, 1930, 2069, 2364, 2442
BspDI ATCGAT 2 cut(s) 852, 2675
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 3 cut(s) 44, 45, 2157
BspMAI CTGCAG 1 cut(s) 1582
BspMI ACCTGC 1 cut(s) 2538
BspPI GGATC 4 cut(s) 560, 1295, 1448, 1649
BspQI GCTCTTC 1 cut(s) 2610
BspTI CTTAAG 1 cut(s) 947
BspTNI GGTCTC 1 cut(s) 2460
BsrDI GCAATG 2 cut(s) 1292, 1347
BsrFI RCCGGY 1 cut(s) 1767
BsrGI TGTACA 2 cut(s) 381, 915
BsrI ACTGG 7 cut(s) 47, 96, 899, 1400, 1732, 1819, 1857
BssAI RCCGGY 1 cut(s) 1767
BssECI CCNNGG 3 cut(s) 595, 1228, 2512
BssMI GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
BssT1I CCWWGG 3 cut(s) 595, 1228, 2512
Bst2UI CCWGG 1 cut(s) 2479
Bst4CI ACNGT 6 cut(s) 74, 226, 317, 1113, 1144, 2359
Bst6I CTCTTC 4 cut(s) 111, 131, 2610, 2731
BstAFI CTTAAG 1 cut(s) 947
BstAPI GCANNNNNTGC 1 cut(s) 2553
BstAUI TGTACA 2 cut(s) 381, 915
BstBAI YACGTR 1 cut(s) 2165
BstEII GGTNACC 2 cut(s) 1799, 2605
BstENI CCTNNNNNAGG 2 cut(s) 404, 1941
BstF5I GGATG 2 cut(s) 1165, 2460
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 2 cut(s) 637, 2547
BstKTI GATC 9 cut(s) 493, 568, 856, 1303, 1456, 1644, 2019, 2173, 2203
BstMAI GTCTC 3 cut(s) 215, 1041, 2460
BstMBI GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
BstMWI GCNNNNNNNGC 6 cut(s) 437, 699, 1193, 1274, 1535, 2553
BstNI CCWGG 1 cut(s) 2479
BstNSI RCATGY 6 cut(s) 357, 1767, 1886, 2274, 2327, 2542
BstPI GGTNACC 2 cut(s) 1799, 2605
BstSCI CCNGG 1 cut(s) 2477
BstSFI CTRYAG 1 cut(s) 1578
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 7 cut(s) 397, 448, 643, 1150, 1153, 2019, 2155
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 5 cut(s) 490, 565, 1300, 1453, 1641
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 5 cut(s) 490, 565, 1300, 1453, 1641
Bsu15I ATCGAT 2 cut(s) 852, 2675
Bsu36I CCTNAGG 2 cut(s) 401, 1938
BsuI GTATCC 1 cut(s) 2233
BsuRI GGCC 8 cut(s) 304, 329, 396, 670, 1323, 1771, 1948, 2423
BsuTUI ATCGAT 2 cut(s) 852, 2675
BtsCI GGATG 2 cut(s) 1165, 2460
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 5 cut(s) 103, 1071, 1140, 1850, 2364
BveI ACCTGC 1 cut(s) 2538
CaiI CAGNNNCTG 3 cut(s) 1395, 1949, 2553
CciI TCATGA 1 cut(s) 1354
CfoI GCGC 2 cut(s) 637, 2547
Cfr10I RCCGGY 1 cut(s) 1767
Cfr13I GGNCC 4 cut(s) 43, 394, 1946, 2498
ClaI ATCGAT 2 cut(s) 852, 2675
CseI GACGC 1 cut(s) 1413
Csp6I GTAC 5 cut(s) 93, 382, 916, 2321, 2551
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviQI GTAC 5 cut(s) 93, 382, 916, 2321, 2551
DpnI GATC 9 cut(s) 492, 567, 855, 1302, 1455, 1643, 2018, 2172, 2202
DpnII GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
DraI TTTAAA 1 cut(s) 507
DraIII CACNNNGTG 1 cut(s) 2165
DriI GACNNNNNGTC 2 cut(s) 730, 2473
Eam1104I CTCTTC 4 cut(s) 111, 131, 2610, 2731
Eam1105I GACNNNNNGTC 2 cut(s) 730, 2473
EarI CTCTTC 4 cut(s) 111, 131, 2610, 2731
Eco130I CCWWGG 3 cut(s) 595, 1228, 2512
Eco147I AGGCCT 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 2460
Eco32I GATATC 2 cut(s) 850, 1711
Eco47I GGWCC 2 cut(s) 43, 2498
Eco57I CTGAAG 2 cut(s) 702, 2634
Eco81I CCTNAGG 2 cut(s) 401, 1938
Eco91I GGTNACC 2 cut(s) 1799, 2605
EcoNI CCTNNNNNAGG 2 cut(s) 404, 1941
EcoO109I RGGNCCY 2 cut(s) 43, 1946
EcoO65I GGTNACC 2 cut(s) 1799, 2605
EcoRI GAATTC 1 cut(s) 2049
EcoRII CCWGG 1 cut(s) 2477
EcoRV GATATC 2 cut(s) 850, 1711
EcoT14I CCWWGG 3 cut(s) 595, 1228, 2512
EcoT22I ATGCAT 2 cut(s) 355, 1279
ErhI CCWWGG 3 cut(s) 595, 1228, 2512
FalI AAGNNNNNCTT 4 cut(s) 292, 324, 1518, 1550
FaqI GGGAC 3 cut(s) 56, 1406, 1454
FauI CCCGC 1 cut(s) 466
FauNDI CATATG 3 cut(s) 1207, 1279, 2205
FblI GTMKAC 3 cut(s) 606, 1137, 1402
Fnu4HI GCNGC 7 cut(s) 411, 462, 657, 1164, 1167, 2033, 2144
FokI GGATG 2 cut(s) 1172, 2467
Fsp4HI GCNGC 7 cut(s) 411, 462, 657, 1164, 1167, 2033, 2144
FspBI CTAG 7 cut(s) 90, 473, 501, 761, 1229, 1895, 2730
GlaI GCGC 2 cut(s) 636, 2546
GluI GCNGC 7 cut(s) 411, 462, 657, 1164, 1167, 2033, 2144
GsaI CCCAGC 1 cut(s) 2150
GsuI CTGGAG 3 cut(s) 1666, 1947, 2540
HaeII RGCGCY 1 cut(s) 638
HaeIII GGCC 8 cut(s) 304, 329, 396, 670, 1323, 1771, 1948, 2423
HapII CCGG 2 cut(s) 243, 1768
HgaI GACGC 1 cut(s) 1413
HhaI GCGC 2 cut(s) 637, 2547
Hin6I GCGC 2 cut(s) 635, 2545
HinP1I GCGC 2 cut(s) 635, 2545
HindIII AAGCTT 2 cut(s) 509, 552
HpaII CCGG 2 cut(s) 243, 1768
HphI GGTGA 2 cut(s) 950, 2573
Hpy166II GTNNAC 5 cut(s) 77, 607, 1138, 1403, 2508
Hpy188I TCNGA 9 cut(s) 202, 346, 435, 613, 1080, 2428, 2451, 2656, 2750
Hpy8I GTNNAC 5 cut(s) 77, 607, 1138, 1403, 2508
HpyCH4III ACNGT 6 cut(s) 74, 226, 317, 1113, 1144, 2359
HpyCH4IV ACGT 1 cut(s) 2164
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 699, 1193, 1274, 1535, 2553
HpySE526I ACGT 1 cut(s) 2164
HspAI GCGC 2 cut(s) 635, 2545
KflI GGGWCCC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 1767
KroNI GCCGGC 1 cut(s) 1769
Kzo9I GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
LguI GCTCTTC 1 cut(s) 2610
LmnI GCTCC 3 cut(s) 583, 1534, 2140
Lsp1109I GCAGC 7 cut(s) 397, 448, 643, 1150, 1153, 2019, 2155
LweI GCATC 9 cut(s) 193, 229, 609, 898, 1150, 1237, 1264, 1585, 2681
MaeI CTAG 7 cut(s) 90, 473, 501, 761, 1229, 1895, 2730
MaeII ACGT 1 cut(s) 2164
MaeIII GTNAC 5 cut(s) 746, 1786, 1799, 2302, 2605
MalI GATC 9 cut(s) 492, 567, 855, 1302, 1455, 1643, 2018, 2172, 2202
MboI GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 5 cut(s) 490, 565, 1300, 1453, 1641
MhlI GDGCHC 1 cut(s) 361
MlyI GAGTC 6 cut(s) 164, 335, 425, 740, 2467, 2531
MmeI TCCRAC 4 cut(s) 210, 318, 2133, 2729
Mph1103I ATGCAT 2 cut(s) 355, 1279
MroNI GCCGGC 1 cut(s) 1767
MroXI GAANNNNTTC 1 cut(s) 2400
MseI TTAA 8 cut(s) 485, 506, 834, 948, 1293, 2001, 2679, 2694
MslI CAYNNNNRTG 1 cut(s) 1548
MspA1I CMGCKG 2 cut(s) 461, 2146
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 2 cut(s) 243, 1768
MspR9I CCNGG 1 cut(s) 2479
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 4 cut(s) 355, 442, 473, 1916
MvaI CCWGG 1 cut(s) 2479
MwoI GCNNNNNNNGC 6 cut(s) 437, 699, 1193, 1274, 1535, 2553
NaeI GCCGGC 1 cut(s) 1769
NdeI CATATG 3 cut(s) 1207, 1279, 2205
NdeII GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
NgoMIV GCCGGC 1 cut(s) 1767
NlaIV GGNNCC 3 cut(s) 44, 45, 2157
NsiI ATGCAT 2 cut(s) 355, 1279
NspI RCATGY 6 cut(s) 357, 1767, 1886, 2274, 2327, 2542
PaeI GCATGC 1 cut(s) 1767
PagI TCATGA 1 cut(s) 1354
PceI AGGCCT 1 cut(s) 304
PciI ACATGT 2 cut(s) 2270, 2538
PciSI GCTCTTC 1 cut(s) 2610
PctI GAATGC 4 cut(s) 355, 442, 473, 1916
PdiI GCCGGC 1 cut(s) 1769
PdmI GAANNNNTTC 1 cut(s) 2400
PfeI GAWTC 8 cut(s) 63, 1307, 1839, 1847, 1859, 1868, 2276, 2657
PkrI GCNGC 7 cut(s) 412, 463, 658, 1165, 1168, 2034, 2145
PleI GAGTC 6 cut(s) 163, 335, 424, 739, 2466, 2530
PpsI GAGTC 6 cut(s) 163, 335, 424, 739, 2466, 2530
Ppu21I YACGTR 1 cut(s) 2165
PpuMI RGGWCCY 1 cut(s) 43
PscI ACATGT 2 cut(s) 2270, 2538
PsiI TTATAA 2 cut(s) 591, 891
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 2477
PspEI GGTNACC 2 cut(s) 1799, 2605
PspFI CCCAGC 1 cut(s) 2146
PspGI CCWGG 1 cut(s) 2477
PspN4I GGNNCC 3 cut(s) 44, 45, 2157
PspPI GGNCC 4 cut(s) 43, 394, 1946, 2498
PspPPI RGGWCCY 1 cut(s) 43
PstI CTGCAG 1 cut(s) 1582
PstNI CAGNNNCTG 3 cut(s) 1395, 1949, 2553
PsuI RGATCY 5 cut(s) 490, 565, 1300, 1453, 1641
PvuII CAGCTG 1 cut(s) 2146
RsaI GTAC 5 cut(s) 94, 383, 917, 2322, 2552
RsaNI GTAC 5 cut(s) 93, 382, 916, 2321, 2551
RseI CAYNNNNRTG 1 cut(s) 1548
SapI GCTCTTC 1 cut(s) 2610
SaqAI TTAA 8 cut(s) 485, 506, 834, 948, 1293, 2001, 2679, 2694
SatI GCNGC 7 cut(s) 411, 462, 657, 1164, 1167, 2033, 2144
Sau3AI GATC 9 cut(s) 490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
Sau96I GGNCC 4 cut(s) 43, 394, 1946, 2498
SchI GAGTC 6 cut(s) 164, 335, 425, 740, 2467, 2531
ScrFI CCNGG 1 cut(s) 2479
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 9 cut(s) 193, 229, 609, 898, 1150, 1237, 1264, 1585, 2681
SfcI CTRYAG 1 cut(s) 1578
SinI GGWCC 2 cut(s) 43, 2498
SmiMI CAYNNNNRTG 1 cut(s) 1548
SmlI CTYRAG 2 cut(s) 525, 947
SmoI CTYRAG 2 cut(s) 525, 947
SpeI ACTAGT 1 cut(s) 500
SphI GCATGC 1 cut(s) 1767
SseBI AGGCCT 1 cut(s) 304
SsiI CCGC 1 cut(s) 459
SspI AATATT 1 cut(s) 1258
SspMI CTAG 7 cut(s) 90, 473, 501, 761, 1229, 1895, 2730
StuI AGGCCT 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 2477
StyI CCWWGG 3 cut(s) 595, 1228, 2512
TaaI ACNGT 6 cut(s) 74, 226, 317, 1113, 1144, 2359
TaiI ACGT 1 cut(s) 2167
TaqI TCGA 4 cut(s) 158, 852, 1900, 2675
TatI WGTACW 3 cut(s) 381, 915, 2320
TfiI GAWTC 8 cut(s) 63, 1307, 1839, 1847, 1859, 1868, 2276, 2657
Tru1I TTAA 8 cut(s) 485, 506, 834, 948, 1293, 2001, 2679, 2694
Tru9I TTAA 8 cut(s) 485, 506, 834, 948, 1293, 2001, 2679, 2694
TscAI CASTG 5 cut(s) 103, 1071, 1147, 1857, 2364
TseI GCWGC 7 cut(s) 410, 461, 656, 1163, 1166, 2032, 2143
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 5 cut(s) 103, 1071, 1147, 1857, 2364
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 2 cut(s) 43, 2498
XagI CCTNNNNNAGG 2 cut(s) 404, 1941
XapI RAATTY 2 cut(s) 2049, 2068
XceI RCATGY 6 cut(s) 357, 1767, 1886, 2274, 2327, 2542
XmaJI CCTAGG 1 cut(s) 1228
XmiI GTMKAC 3 cut(s) 606, 1137, 1402
XmnI GAANNNNTTC 1 cut(s) 2400
XspI CTAG 7 cut(s) 90, 473, 501, 761, 1229, 1895, 2730
Zsp2I ATGCAT 2 cut(s) 355, 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.